Wall clock time and date at job start Tue Mar 31 2020 23:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47120 * 2 1 4 4 C 1.52992 * 109.47234 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47233 * 179.97438 * 4 3 2 6 6 C 1.47015 * 111.00172 * 288.05160 * 5 4 3 7 7 C 1.53098 * 109.25667 * 177.60592 * 6 5 4 8 8 O 1.43014 * 109.26147 * 56.84932 * 7 6 5 9 9 C 1.43016 * 113.73866 * 301.33191 * 8 7 6 10 10 C 1.47019 * 111.00195 * 164.41769 * 5 4 3 11 11 H 1.08999 * 109.50721 * 62.41490 * 10 5 4 12 12 C 1.50703 * 109.50339 * 302.32994 * 10 5 4 13 13 O 1.21280 * 120.00001 * 330.11541 * 12 10 5 14 14 N 1.34778 * 119.99999 * 150.11781 * 12 10 5 15 15 C 1.46500 * 120.00366 * 180.02562 * 14 12 10 16 16 H 1.09005 * 109.49197 * 35.05904 * 15 14 12 17 17 C 1.53036 * 109.50057 * 155.15856 * 15 14 12 18 18 C 1.53035 * 109.53621 * 181.31669 * 17 15 14 19 19 C 1.53189 * 109.31353 * 298.63273 * 18 17 15 20 20 N 1.46922 * 108.77496 * 54.63904 * 19 18 17 21 21 C 1.36942 * 120.63517 * 126.36916 * 20 19 18 22 22 H 1.07999 * 119.99950 * 203.89026 * 21 20 19 23 23 C 1.38814 * 119.99714 * 23.88903 * 21 20 19 24 24 N 1.31621 * 119.99751 * 24.42779 * 23 21 20 25 25 Si 1.86799 * 119.99911 * 204.43006 * 23 21 20 26 26 H 1.48498 * 109.47403 * 94.99169 * 25 23 21 27 27 H 1.48506 * 109.46901 * 214.99123 * 25 23 21 28 28 H 1.48498 * 109.47116 * 334.98573 * 25 23 21 29 29 C 1.46929 * 118.73876 * 306.39065 * 20 19 18 30 30 H 1.09007 * 109.46875 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47719 * 300.00141 * 1 2 3 32 32 H 1.09000 * 109.46754 * 60.00512 * 1 2 3 33 33 H 1.09000 * 109.46754 * 119.99488 * 2 1 3 34 34 H 1.08996 * 109.47719 * 239.99859 * 2 1 3 35 35 H 1.08999 * 109.46609 * 299.99867 * 3 2 1 36 36 H 1.08996 * 109.46940 * 59.99382 * 3 2 1 37 37 H 1.09000 * 109.47779 * 300.00372 * 4 3 2 38 38 H 1.09004 * 109.47044 * 59.99826 * 4 3 2 39 39 H 1.09003 * 109.50996 * 297.53990 * 6 5 4 40 40 H 1.08998 * 109.50529 * 57.67591 * 6 5 4 41 41 H 1.09010 * 109.50715 * 296.91109 * 7 6 5 42 42 H 1.08999 * 109.54322 * 176.81210 * 7 6 5 43 43 H 1.09000 * 109.50553 * 298.73114 * 9 8 7 44 44 H 1.08991 * 109.50640 * 178.60357 * 9 8 7 45 45 H 0.97006 * 119.99483 * 359.97438 * 14 12 10 46 46 H 1.08996 * 109.45753 * 301.33294 * 17 15 14 47 47 H 1.08994 * 109.46160 * 61.29554 * 17 15 14 48 48 H 1.09004 * 109.49825 * 178.68254 * 18 17 15 49 49 H 1.08997 * 109.52691 * 58.60562 * 18 17 15 50 50 H 1.09002 * 109.58735 * 294.84920 * 19 18 17 51 51 H 1.09002 * 109.58967 * 174.42462 * 19 18 17 52 52 H 0.97005 * 119.99900 * 180.02562 * 24 23 21 53 53 H 1.09005 * 109.58368 * 293.81953 * 29 20 19 54 54 H 1.09000 * 109.58552 * 173.39678 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0596 2.8276 0.0000 6 6 3.8348 3.4653 -1.3054 7 6 4.3038 4.9213 -1.2434 8 8 5.6791 4.9578 -0.8528 9 6 5.9340 4.3457 0.4144 10 6 5.4815 2.8839 0.3693 11 1 6.0713 2.3423 -0.3702 12 6 5.6745 2.2553 1.7253 13 8 4.7818 2.2961 2.5452 14 7 6.8392 1.6478 2.0269 15 6 7.0267 1.0362 3.3448 16 1 6.0833 0.6090 3.6851 17 6 8.0832 -0.0669 3.2505 18 6 8.2560 -0.7284 4.6196 19 6 8.7376 0.3171 5.6303 20 7 7.8018 1.4497 5.6213 21 6 7.2268 1.8890 6.7839 22 1 6.2906 2.4268 6.7537 23 6 7.8471 1.6432 8.0011 24 7 9.1471 1.4430 8.0486 25 14 6.8368 1.5964 9.5717 26 1 6.4655 0.1920 9.8798 27 1 7.6369 2.1540 10.6916 28 1 5.6051 2.4062 9.3922 29 6 7.4942 2.1018 4.3411 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.9330 0.9289 0.8908 38 1 3.9336 0.9286 -0.8891 39 1 4.3984 2.9337 -2.0721 40 1 2.7724 3.4352 -1.5470 41 1 3.7038 5.4664 -0.5146 42 1 4.1918 5.3826 -2.2247 43 1 5.3815 4.8739 1.1915 44 1 7.0011 4.3899 0.6318 45 1 7.5531 1.6149 1.3709 46 1 7.7642 -0.8141 2.5239 47 1 9.0323 0.3654 2.9337 48 1 8.9917 -1.5295 4.5464 49 1 7.3018 -1.1399 4.9485 50 1 9.7330 0.6633 5.3518 51 1 8.7675 -0.1242 6.6266 52 1 9.5806 1.2708 8.8992 53 1 8.3882 2.5936 3.9574 54 1 6.7037 2.8380 4.4866 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008051219.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:52 Heat of formation + Delta-G solvation = -85.212144 kcal Electronic energy + Delta-G solvation = -31389.653206 eV Core-core repulsion = 27360.714533 eV Total energy + Delta-G solvation = -4028.938672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.68545 -40.10033 -38.83999 -37.54620 -35.93539 -35.23011 -34.20341 -32.62626 -32.37811 -30.70166 -30.10780 -27.46051 -27.26395 -25.94388 -23.92941 -23.77039 -23.65840 -22.12569 -21.79429 -21.30751 -20.70856 -18.75001 -18.42823 -17.63544 -17.51014 -17.03494 -16.64800 -16.51376 -16.19476 -15.91528 -15.63178 -15.56768 -15.37954 -15.16579 -15.06629 -14.77271 -14.47034 -14.25261 -14.04993 -13.91277 -13.84847 -13.42407 -13.36007 -13.09042 -12.97052 -12.75876 -12.59465 -12.49342 -12.22756 -12.14783 -11.99818 -11.95477 -11.91293 -11.79010 -11.65385 -11.60106 -11.37072 -11.31090 -10.98867 -10.62794 -10.58173 -10.11759 -9.42289 -8.78037 -7.94945 -5.32052 1.42486 1.44616 1.52144 1.54547 1.95457 2.48989 2.61350 2.89689 3.17601 3.58163 3.67752 3.75936 3.85640 3.88375 3.90641 3.96574 4.08535 4.10016 4.21240 4.23416 4.26487 4.29018 4.38975 4.45549 4.52316 4.55011 4.63917 4.65291 4.69118 4.78929 4.79133 4.88722 4.89965 4.95105 4.97220 5.00229 5.05299 5.10309 5.13688 5.23018 5.24771 5.36588 5.42924 5.45105 5.53442 5.61386 5.72298 5.78066 5.94313 6.02682 6.31625 6.58416 7.09293 7.27118 7.80955 8.29359 9.11470 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.002897 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.797648 B = 9661.508554 C =10476.846890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.104 4.104 4 C 0.058 3.942 5 N -0.536 5.536 6 C 0.022 3.978 7 C 0.055 3.945 8 O -0.386 6.386 9 C 0.080 3.920 10 C 0.044 3.956 11 H 0.091 0.909 12 C 0.516 3.484 13 O -0.560 6.560 14 N -0.707 5.707 15 C 0.145 3.855 16 H 0.055 0.945 17 C -0.104 4.104 18 C -0.129 4.129 19 C 0.169 3.831 20 N -0.607 5.607 21 C -0.269 4.269 22 H 0.053 0.947 23 C -0.041 4.041 24 N -0.924 5.924 25 Si 0.958 3.042 26 H -0.282 1.282 27 H -0.289 1.289 28 H -0.276 1.276 29 C 0.146 3.854 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.106 0.894 41 H 0.054 0.946 42 H 0.128 0.872 43 H 0.047 0.953 44 H 0.119 0.881 45 H 0.415 0.585 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.085 0.915 49 H 0.046 0.954 50 H 0.007 0.993 51 H 0.053 0.947 52 H 0.253 0.747 53 H 0.023 0.977 54 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.945 -1.314 -25.664 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.142 4.142 4 C -0.069 4.069 5 N -0.263 5.263 6 C -0.106 4.106 7 C -0.022 4.022 8 O -0.304 6.304 9 C 0.002 3.998 10 C -0.068 4.068 11 H 0.108 0.892 12 C 0.301 3.699 13 O -0.437 6.437 14 N -0.360 5.360 15 C 0.038 3.962 16 H 0.073 0.927 17 C -0.142 4.142 18 C -0.168 4.168 19 C 0.044 3.956 20 N -0.331 5.331 21 C -0.399 4.399 22 H 0.071 0.929 23 C -0.238 4.238 24 N -0.569 5.569 25 Si 0.786 3.214 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.201 1.201 29 C 0.019 3.981 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.125 0.875 41 H 0.072 0.928 42 H 0.146 0.854 43 H 0.066 0.934 44 H 0.137 0.863 45 H 0.252 0.748 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.104 0.896 49 H 0.065 0.935 50 H 0.025 0.975 51 H 0.072 0.928 52 H 0.062 0.938 53 H 0.041 0.959 54 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.610 -0.937 -24.704 26.524 hybrid contribution 0.226 -0.419 0.948 1.061 sum -9.384 -1.357 -23.756 25.578 Atomic orbital electron populations 1.21738 0.94906 1.02054 1.01950 1.21473 0.96712 0.96036 1.01804 1.21478 0.93315 0.97188 1.02190 1.22156 0.96907 0.87578 1.00287 1.61933 1.14606 1.19062 1.30651 1.22947 1.03526 0.95567 0.88513 1.22943 0.81621 0.95337 1.02266 1.88004 1.27383 1.78767 1.36253 1.22500 1.02305 0.88767 0.86261 1.22233 0.91796 0.99017 0.93777 0.89162 1.20677 0.81973 0.77951 0.89287 1.90745 1.43096 1.58666 1.51182 1.45967 1.16615 1.57137 1.16322 1.21221 0.98839 0.94017 0.82117 0.92659 1.21604 0.98209 0.96708 0.97643 1.21998 1.01179 0.98410 0.95260 1.20745 0.90072 0.86814 0.98016 1.44274 1.52405 1.34165 1.02224 1.19382 1.01319 1.33908 0.85319 0.92928 1.25545 0.95832 1.02063 1.00336 1.70236 1.08274 1.52934 1.25496 0.85393 0.78420 0.77891 0.79669 1.20909 1.21550 1.20095 1.21200 0.96656 0.93747 0.86483 0.92110 0.93522 0.91690 0.93532 0.90919 0.90418 0.93363 0.93079 0.93203 0.92693 0.87543 0.92794 0.85382 0.93442 0.86347 0.74802 0.89507 0.90394 0.89629 0.93497 0.97501 0.92832 0.93804 0.95903 0.95342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.12 -2.08 5.93 30.60 0.18 -1.90 16 3 C -0.10 -1.98 5.26 30.59 0.16 -1.82 16 4 C 0.06 1.23 4.65 86.30 0.40 1.63 16 5 N -0.54 -11.71 4.24 -874.40 -3.70 -15.41 16 6 C 0.02 0.32 5.46 86.31 0.47 0.80 16 7 C 0.05 0.84 7.01 72.01 0.50 1.35 16 8 O -0.39 -7.78 10.83 -148.98 -1.61 -9.39 16 9 C 0.08 1.72 6.27 72.01 0.45 2.17 16 10 C 0.04 0.96 2.37 44.18 0.10 1.07 16 11 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 12 C 0.52 15.17 5.64 87.66 0.49 15.67 16 13 O -0.56 -22.50 15.39 -3.03 -0.05 -22.55 16 14 N -0.71 -18.56 5.08 -442.16 -2.25 -20.80 16 15 C 0.14 5.00 2.60 45.07 0.12 5.11 16 16 H 0.06 2.29 7.58 -2.38 -0.02 2.27 16 17 C -0.10 -2.98 5.35 30.62 0.16 -2.81 16 18 C -0.13 -4.56 6.08 30.67 0.19 -4.38 16 19 C 0.17 8.03 5.39 86.36 0.47 8.50 16 20 N -0.61 -31.71 3.01 -699.09 -2.10 -33.82 16 21 C -0.27 -15.81 9.58 84.03 0.80 -15.00 16 22 H 0.05 3.18 7.92 -2.91 -0.02 3.15 16 23 C -0.04 -2.40 4.75 84.86 0.40 -2.00 16 24 N -0.92 -55.26 11.39 21.65 0.25 -55.01 16 25 Si 0.96 46.66 29.62 68.60 2.03 48.69 16 26 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 28 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 29 C 0.15 6.45 6.09 86.36 0.53 6.97 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.16 6.72 -2.39 -0.02 1.15 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.41 6.03 -2.39 -0.01 1.40 16 38 H 0.05 0.86 8.05 -2.38 -0.02 0.84 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.11 1.27 6.62 -2.39 -0.02 1.26 16 41 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.41 7.53 8.60 -92.70 -0.80 6.73 16 46 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 49 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 51 H 0.05 2.90 5.98 -2.39 -0.01 2.89 16 52 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 53 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 54 H 0.03 1.39 7.92 -2.39 -0.02 1.37 16 Total: -1.00 -74.22 413.52 -1.22 -75.44 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.06 Total: 18.98 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 6.15 Total: 13.87 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -7.81 Total: -125.04 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.66 Total: -31.94 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -74.22 -1.22 -75.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008051219.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.773 kcal (2) G-P(sol) polarization free energy of solvation -74.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds