Wall clock time and date at job start Tue Mar 31 2020 23:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46986 * 2 1 4 4 C 1.53003 * 109.46622 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47040 * 179.97438 * 4 3 2 6 6 C 1.47015 * 110.99616 * 46.36715 * 5 4 3 7 7 C 1.53099 * 109.25738 * 182.39474 * 6 5 4 8 8 O 1.43016 * 109.25755 * 303.15030 * 7 6 5 9 9 C 1.43016 * 113.73893 * 58.66648 * 8 7 6 10 10 C 1.47011 * 111.00391 * 169.99950 * 5 4 3 11 11 H 1.09000 * 109.50555 * 297.55032 * 10 5 4 12 12 C 1.50702 * 109.50546 * 57.67374 * 10 5 4 13 13 O 1.21282 * 119.99749 * 0.02562 * 12 10 5 14 14 N 1.34769 * 120.00444 * 180.02562 * 12 10 5 15 15 C 1.46499 * 120.00665 * 180.02562 * 14 12 10 16 16 H 1.09005 * 109.49334 * 324.93802 * 15 14 12 17 17 C 1.53042 * 109.49971 * 204.84005 * 15 14 12 18 18 C 1.53043 * 109.53572 * 178.68622 * 17 15 14 19 19 C 1.53183 * 109.31659 * 61.36174 * 18 17 15 20 20 N 1.46929 * 108.77634 * 305.36712 * 19 18 17 21 21 C 1.36939 * 120.63030 * 233.58944 * 20 19 18 22 22 H 1.08002 * 120.00268 * 152.30764 * 21 20 19 23 23 C 1.38812 * 120.00029 * 332.30093 * 21 20 19 24 24 N 1.31629 * 120.00063 * 342.60664 * 23 21 20 25 25 Si 1.86797 * 120.00213 * 162.59924 * 23 21 20 26 26 H 1.48502 * 109.47037 * 94.35174 * 25 23 21 27 27 H 1.48496 * 109.47572 * 214.35381 * 25 23 21 28 28 H 1.48499 * 109.47218 * 334.35335 * 25 23 21 29 29 C 1.46921 * 118.74165 * 53.60640 * 20 19 18 30 30 H 1.08997 * 109.46898 * 300.00225 * 1 2 3 31 31 H 1.09003 * 109.47099 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47242 * 59.99839 * 1 2 3 33 33 H 1.08995 * 109.46878 * 120.00217 * 2 1 3 34 34 H 1.09006 * 109.46949 * 239.99932 * 2 1 3 35 35 H 1.09000 * 109.47372 * 299.99378 * 3 2 1 36 36 H 1.08994 * 109.46992 * 60.00230 * 3 2 1 37 37 H 1.08997 * 109.47664 * 299.99634 * 4 3 2 38 38 H 1.09003 * 109.47262 * 60.00567 * 4 3 2 39 39 H 1.09003 * 109.50802 * 302.32194 * 6 5 4 40 40 H 1.09001 * 109.50853 * 62.45818 * 6 5 4 41 41 H 1.08997 * 109.50854 * 183.21636 * 7 6 5 42 42 H 1.08998 * 109.54741 * 63.10282 * 7 6 5 43 43 H 1.08997 * 109.51098 * 181.39453 * 9 8 7 44 44 H 1.09005 * 109.50130 * 61.26748 * 9 8 7 45 45 H 0.97007 * 119.99379 * 359.97438 * 14 12 10 46 46 H 1.09000 * 109.45735 * 298.70119 * 17 15 14 47 47 H 1.08992 * 109.45871 * 58.66159 * 17 15 14 48 48 H 1.08999 * 109.49197 * 301.40685 * 18 17 15 49 49 H 1.09002 * 109.49542 * 181.31838 * 18 17 15 50 50 H 1.09001 * 109.58753 * 185.57906 * 19 18 17 51 51 H 1.09001 * 109.59189 * 65.15253 * 19 18 17 52 52 H 0.96993 * 119.99939 * 179.97438 * 24 23 21 53 53 H 1.08994 * 109.58803 * 186.60352 * 29 20 19 54 54 H 1.09003 * 109.70180 * 66.25177 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0598 2.8274 0.0000 6 6 3.3421 3.6403 0.9927 7 6 3.8406 5.0859 0.9170 8 8 5.2560 5.1080 1.1205 9 6 5.9864 4.3269 0.1709 10 6 5.5096 2.8737 0.2389 11 1 5.7293 2.4643 1.2250 12 6 6.2192 2.0614 -0.8136 13 8 5.5811 1.4993 -1.6782 14 7 7.5629 1.9596 -0.7940 15 6 8.2529 1.1705 -1.8174 16 1 7.6432 0.3068 -2.0831 17 6 9.6023 0.6961 -1.2732 18 6 10.3094 -0.1557 -2.3299 19 6 10.5635 0.6941 -3.5788 20 7 9.2886 1.2727 -4.0245 21 6 8.8589 1.1047 -5.3138 22 1 7.8021 1.1130 -5.5363 23 6 9.7817 0.9238 -6.3349 24 7 11.0436 1.2474 -6.1465 25 14 9.2328 0.2210 -7.9763 26 1 8.9253 1.3319 -8.9125 27 1 10.3187 -0.6182 -8.5435 28 1 8.0179 -0.6095 -7.7777 29 6 8.4836 2.0354 -3.0607 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9562 0.8900 37 1 3.9331 0.9287 0.8908 38 1 3.9338 0.9285 -0.8892 39 1 2.2730 3.6126 0.7815 40 1 3.5271 3.2433 1.9908 41 1 3.3525 5.6801 1.6895 42 1 3.6074 5.5013 -0.0633 43 1 7.0503 4.3721 0.4037 44 1 5.8156 4.7195 -0.8315 45 1 8.0733 2.4096 -0.1026 46 1 10.2202 1.5607 -1.0308 47 1 9.4423 0.1008 -0.3744 48 1 9.6809 -1.0072 -2.5908 49 1 11.2598 -0.5126 -1.9331 50 1 10.9765 0.0675 -4.3694 51 1 11.2642 1.4941 -3.3402 52 1 11.6885 1.1206 -6.8599 53 1 7.5244 2.2938 -3.5092 54 1 9.0125 2.9460 -2.7793 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008051220.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:56 Heat of formation + Delta-G solvation = -79.867570 kcal Electronic energy + Delta-G solvation = -31365.305868 eV Core-core repulsion = 27336.598953 eV Total energy + Delta-G solvation = -4028.706914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.71399 -40.09595 -38.84574 -37.61785 -35.93332 -35.14358 -34.24947 -32.64966 -32.34706 -30.65696 -29.99300 -27.45650 -27.25378 -25.93001 -23.93304 -23.77175 -23.66698 -22.37945 -21.46288 -21.28170 -20.75749 -18.73771 -18.46154 -17.55202 -17.34694 -17.03155 -16.76052 -16.54335 -16.09518 -15.93136 -15.78926 -15.60790 -15.44427 -15.12983 -15.04902 -14.83828 -14.41636 -14.25103 -14.04881 -13.84639 -13.71663 -13.37895 -13.30525 -13.03629 -12.91965 -12.76256 -12.62148 -12.53818 -12.24144 -12.17735 -12.03085 -11.95581 -11.85472 -11.73686 -11.63635 -11.56282 -11.37153 -11.30168 -10.93454 -10.63112 -10.47580 -10.10822 -9.36236 -8.70251 -7.91936 -5.36883 1.42724 1.43977 1.54151 1.55803 1.97615 2.48884 2.62816 2.90398 3.22324 3.60057 3.65280 3.77478 3.88108 3.91509 3.93351 3.98331 4.06553 4.11343 4.17924 4.24914 4.25580 4.32492 4.40580 4.47471 4.54956 4.56626 4.65113 4.68824 4.73816 4.80346 4.81129 4.89491 4.91478 4.95590 4.97749 5.02074 5.10009 5.13365 5.19311 5.21717 5.27069 5.36251 5.42049 5.48531 5.57837 5.62058 5.75779 5.81257 5.98393 6.04617 6.35692 6.58146 7.11787 7.28153 7.81835 8.31131 9.13775 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.002888 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.380192 B = 9692.103246 C =10774.702379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.111 4.111 4 C 0.047 3.953 5 N -0.535 5.535 6 C 0.016 3.984 7 C 0.056 3.944 8 O -0.386 6.386 9 C 0.078 3.922 10 C 0.041 3.959 11 H 0.091 0.909 12 C 0.515 3.485 13 O -0.558 6.558 14 N -0.706 5.706 15 C 0.145 3.855 16 H 0.056 0.944 17 C -0.104 4.104 18 C -0.130 4.130 19 C 0.171 3.829 20 N -0.607 5.607 21 C -0.267 4.267 22 H 0.051 0.949 23 C -0.043 4.043 24 N -0.929 5.929 25 Si 0.964 3.036 26 H -0.284 1.284 27 H -0.284 1.284 28 H -0.276 1.276 29 C 0.147 3.853 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.028 0.972 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.050 0.950 41 H 0.127 0.873 42 H 0.055 0.945 43 H 0.126 0.874 44 H 0.051 0.949 45 H 0.415 0.585 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.046 0.954 49 H 0.084 0.916 50 H 0.054 0.946 51 H 0.006 0.994 52 H 0.253 0.747 53 H 0.027 0.973 54 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.248 3.273 21.932 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.149 4.149 4 C -0.080 4.080 5 N -0.261 5.261 6 C -0.111 4.111 7 C -0.021 4.021 8 O -0.305 6.305 9 C 0.000 4.000 10 C -0.071 4.071 11 H 0.109 0.891 12 C 0.301 3.699 13 O -0.436 6.436 14 N -0.359 5.359 15 C 0.038 3.962 16 H 0.074 0.926 17 C -0.142 4.142 18 C -0.169 4.169 19 C 0.046 3.954 20 N -0.331 5.331 21 C -0.398 4.398 22 H 0.069 0.931 23 C -0.239 4.239 24 N -0.574 5.574 25 Si 0.791 3.209 26 H -0.211 1.211 27 H -0.210 1.210 28 H -0.201 1.201 29 C 0.020 3.980 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.068 0.932 41 H 0.145 0.855 42 H 0.074 0.926 43 H 0.144 0.856 44 H 0.069 0.931 45 H 0.252 0.748 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.065 0.935 49 H 0.103 0.897 50 H 0.072 0.928 51 H 0.024 0.976 52 H 0.062 0.938 53 H 0.046 0.954 54 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -14.581 3.173 20.887 25.670 hybrid contribution 0.258 -0.678 -0.720 1.022 sum -14.323 2.495 20.167 24.861 Atomic orbital electron populations 1.21733 0.94515 1.02072 1.02157 1.21473 0.96904 0.96179 1.01639 1.21677 0.93148 0.97480 1.02553 1.22424 0.96359 0.88106 1.01145 1.62018 1.01457 1.12710 1.49928 1.23015 1.00531 0.93991 0.93585 1.22941 0.80531 0.95544 1.03076 1.87997 1.19314 1.69478 1.53679 1.22612 0.97502 0.86391 0.93453 1.22267 0.90112 0.97854 0.96874 0.89119 1.20708 0.82536 0.80812 0.85849 1.90661 1.66140 1.47848 1.38943 1.45908 1.06111 1.52589 1.31302 1.21226 0.93636 0.93551 0.87758 0.92583 1.21610 0.93786 1.00530 0.98275 1.22013 1.00550 0.98224 0.96126 1.20727 0.86113 0.94325 0.94272 1.44224 1.21817 1.59946 1.07115 1.19376 0.91351 1.44344 0.84702 0.93075 1.25701 0.96126 1.01401 1.00696 1.70166 1.02928 1.50641 1.33701 0.85327 0.77386 0.78195 0.79956 1.21107 1.20981 1.20117 1.21189 0.93723 0.92932 0.90170 0.91737 0.92295 0.92907 0.91765 0.93381 0.92128 0.90216 0.95340 0.90515 0.87357 0.93168 0.85507 0.92646 0.85643 0.93112 0.74819 0.90414 0.89492 0.93526 0.89709 0.92772 0.97601 0.93835 0.95438 0.96027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.12 -2.18 5.93 30.59 0.18 -2.00 16 3 C -0.11 -2.06 4.48 30.59 0.14 -1.93 16 4 C 0.05 1.11 4.62 86.30 0.40 1.51 16 5 N -0.54 -12.32 4.51 -874.38 -3.94 -16.26 16 6 C 0.02 0.26 4.94 86.31 0.43 0.68 16 7 C 0.06 0.86 7.01 72.02 0.50 1.36 16 8 O -0.39 -7.48 10.83 -148.98 -1.61 -9.09 16 9 C 0.08 1.55 6.16 72.01 0.44 1.99 16 10 C 0.04 0.91 2.36 44.18 0.10 1.01 16 11 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 12 C 0.51 15.10 6.85 87.66 0.60 15.70 16 13 O -0.56 -21.94 13.37 -3.03 -0.04 -21.98 16 14 N -0.71 -18.43 4.99 -442.16 -2.21 -20.63 16 15 C 0.14 5.00 2.60 45.07 0.12 5.11 16 16 H 0.06 2.31 7.58 -2.38 -0.02 2.29 16 17 C -0.10 -2.99 5.35 30.62 0.16 -2.83 16 18 C -0.13 -4.60 6.08 30.67 0.19 -4.41 16 19 C 0.17 8.16 5.31 86.36 0.46 8.62 16 20 N -0.61 -31.80 2.99 -699.11 -2.09 -33.89 16 21 C -0.27 -15.69 9.58 84.03 0.81 -14.88 16 22 H 0.05 3.08 7.89 -2.91 -0.02 3.05 16 23 C -0.04 -2.51 4.91 84.86 0.42 -2.09 16 24 N -0.93 -55.49 11.19 21.65 0.24 -55.25 16 25 Si 0.96 46.63 29.59 68.60 2.03 48.66 16 26 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 28 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 29 C 0.15 6.50 6.09 86.36 0.53 7.02 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.14 6.28 -2.39 -0.02 1.13 16 37 H 0.03 0.64 8.08 -2.39 -0.02 0.62 16 38 H 0.08 2.47 5.49 -2.39 -0.01 2.45 16 39 H 0.11 1.44 6.05 -2.39 -0.01 1.42 16 40 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.13 1.86 7.68 -2.39 -0.02 1.85 16 44 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.41 7.43 8.10 -92.70 -0.75 6.68 16 46 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 50 H 0.05 2.95 6.04 -2.39 -0.01 2.94 16 51 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 52 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 53 H 0.03 1.35 7.93 -2.39 -0.02 1.33 16 54 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.52 408.82 -1.32 -74.84 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.11 Total: 20.08 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 6.18 Total: 13.51 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -8.00 Total: -126.03 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.65 Total: -31.07 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -73.52 -1.32 -74.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008051220.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.025 kcal (2) G-P(sol) polarization free energy of solvation -73.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds