Wall clock time and date at job start Tue Mar 31 2020 23:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47424 * 2 1 4 4 C 1.52995 * 109.47450 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47176 * 180.02562 * 4 3 2 6 6 C 1.47012 * 111.00299 * 46.36628 * 5 4 3 7 7 C 1.53095 * 109.26059 * 182.39440 * 6 5 4 8 8 O 1.43016 * 109.25694 * 303.14800 * 7 6 5 9 9 C 1.43018 * 113.74029 * 58.67053 * 8 7 6 10 10 C 1.47019 * 111.00090 * 169.99913 * 5 4 3 11 11 H 1.08994 * 109.53960 * 297.56592 * 10 5 4 12 12 C 1.50700 * 109.50385 * 57.66778 * 10 5 4 13 13 O 1.21284 * 120.00476 * 359.78807 * 12 10 5 14 14 N 1.34776 * 119.99961 * 179.78222 * 12 10 5 15 15 C 1.46500 * 120.00523 * 180.27959 * 14 12 10 16 16 H 1.08999 * 109.49262 * 34.72172 * 15 14 12 17 17 C 1.53035 * 109.50238 * 154.78790 * 15 14 12 18 18 C 1.53036 * 109.54064 * 181.31704 * 17 15 14 19 19 C 1.53193 * 109.31634 * 298.63882 * 18 17 15 20 20 N 1.46928 * 108.77530 * 54.63098 * 19 18 17 21 21 C 1.36930 * 120.63311 * 126.39198 * 20 19 18 22 22 H 1.07994 * 120.00449 * 207.68354 * 21 20 19 23 23 C 1.38817 * 119.99668 * 27.68384 * 21 20 19 24 24 N 1.31619 * 120.00277 * 17.36197 * 23 21 20 25 25 Si 1.86802 * 119.99813 * 197.35951 * 23 21 20 26 26 H 1.48498 * 109.47129 * 90.00231 * 25 23 21 27 27 H 1.48503 * 109.46933 * 210.00020 * 25 23 21 28 28 H 1.48498 * 109.47138 * 329.99789 * 25 23 21 29 29 C 1.46937 * 118.76470 * 306.41519 * 20 19 18 30 30 H 1.08999 * 109.46791 * 300.00018 * 1 2 3 31 31 H 1.09001 * 109.46668 * 59.99551 * 1 2 3 32 32 H 1.08995 * 109.46725 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46791 * 239.99982 * 2 1 3 34 34 H 1.08997 * 109.47372 * 120.00426 * 2 1 3 35 35 H 1.09000 * 109.46944 * 59.99445 * 3 2 1 36 36 H 1.09003 * 109.46819 * 300.00441 * 3 2 1 37 37 H 1.08999 * 109.46959 * 59.99863 * 4 3 2 38 38 H 1.09003 * 109.46918 * 300.00615 * 4 3 2 39 39 H 1.08998 * 109.50670 * 62.45555 * 6 5 4 40 40 H 1.09004 * 109.53909 * 302.34810 * 6 5 4 41 41 H 1.08998 * 109.50845 * 183.21713 * 7 6 5 42 42 H 1.08998 * 109.50785 * 63.08290 * 7 6 5 43 43 H 1.08996 * 109.51299 * 181.39967 * 9 8 7 44 44 H 1.09000 * 109.50678 * 61.25768 * 9 8 7 45 45 H 0.97009 * 119.99658 * 0.02562 * 14 12 10 46 46 H 1.09007 * 109.46070 * 301.34264 * 17 15 14 47 47 H 1.09000 * 109.46041 * 61.30962 * 17 15 14 48 48 H 1.09003 * 109.49707 * 58.59076 * 18 17 15 49 49 H 1.09001 * 109.50094 * 178.64971 * 18 17 15 50 50 H 1.08997 * 109.58908 * 174.41999 * 19 18 17 51 51 H 1.09000 * 109.58327 * 294.70492 * 19 18 17 52 52 H 0.96995 * 120.00567 * 179.97438 * 24 23 21 53 53 H 1.08997 * 109.56202 * 293.78452 * 29 20 19 54 54 H 1.08996 * 109.61796 * 173.35334 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0598 2.8274 0.0000 6 6 3.3429 3.6393 0.9941 7 6 3.8414 5.0849 0.9197 8 8 5.2570 5.1067 1.1221 9 6 5.9867 4.3268 0.1710 10 6 5.5099 2.8735 0.2377 11 1 5.7310 2.4627 1.2228 12 6 6.2185 2.0623 -0.8162 13 8 5.5794 1.4976 -1.6785 14 7 7.5627 1.9645 -0.8007 15 6 8.2521 1.1811 -1.8288 16 1 7.7188 1.2732 -2.7750 17 6 9.6814 1.7020 -1.9953 18 6 10.3920 0.9057 -3.0921 19 6 10.4594 -0.5695 -2.6844 20 7 9.1005 -1.0391 -2.3818 21 6 8.5941 -2.1527 -2.9968 22 1 7.5285 -2.2525 -3.1410 23 6 9.4504 -3.1536 -3.4349 24 7 10.6821 -3.2139 -2.9749 25 14 8.8547 -4.4148 -4.6774 26 1 9.1276 -3.9230 -6.0517 27 1 9.5684 -5.6989 -4.4603 28 1 7.3945 -4.6254 -4.5078 29 6 8.2946 -0.2911 -1.4071 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9330 0.9288 -0.8908 38 1 3.9338 0.9284 0.8891 39 1 3.5288 3.2411 1.9915 40 1 2.2736 3.6118 0.7846 41 1 3.3540 5.6782 1.6933 42 1 3.6074 5.5007 -0.0603 43 1 7.0507 4.3716 0.4030 44 1 5.8150 4.7204 -0.8309 45 1 8.0739 2.4160 -0.1108 46 1 9.6539 2.7561 -2.2717 47 1 10.2216 1.5871 -1.0555 48 1 9.8388 0.9999 -4.0265 49 1 11.4019 1.2930 -3.2267 50 1 10.8749 -1.1564 -3.5035 51 1 11.0901 -0.6761 -1.8018 52 1 11.2804 -3.9134 -3.2807 53 1 8.7464 -0.3752 -0.4188 54 1 7.2820 -0.6937 -1.3837 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008051221.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:00 Heat of formation + Delta-G solvation = -80.152508 kcal Electronic energy + Delta-G solvation = -31413.217668 eV Core-core repulsion = 27384.498398 eV Total energy + Delta-G solvation = -4028.719270 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.71354 -40.09552 -38.84633 -37.62353 -35.93930 -35.15004 -34.25297 -32.65257 -32.35613 -30.66810 -29.99044 -27.43992 -27.27368 -25.93199 -23.94166 -23.77451 -23.67362 -22.37504 -21.45830 -21.33590 -20.72882 -18.74290 -18.46600 -17.59051 -17.28638 -17.02256 -16.77408 -16.57572 -16.09833 -15.93228 -15.86386 -15.52802 -15.44834 -15.14471 -15.08127 -14.78032 -14.49024 -14.24452 -14.04498 -13.85191 -13.72139 -13.39080 -13.30097 -13.04662 -12.92859 -12.78124 -12.57346 -12.55256 -12.24895 -12.13109 -12.10039 -11.98633 -11.86755 -11.73959 -11.64386 -11.54919 -11.38169 -11.31204 -10.91986 -10.63075 -10.44751 -10.12879 -9.40127 -8.71837 -7.92707 -5.38149 1.42517 1.43970 1.52946 1.55506 1.96527 2.47909 2.62477 2.91546 3.21175 3.59737 3.65314 3.76638 3.87199 3.91340 3.94721 3.98102 4.05822 4.11710 4.16637 4.24919 4.26004 4.32391 4.39310 4.47098 4.55020 4.56215 4.65511 4.68019 4.73423 4.79829 4.80259 4.89267 4.90975 4.94877 4.97274 5.00604 5.09815 5.13150 5.18503 5.20836 5.27238 5.34487 5.40891 5.47929 5.57360 5.61288 5.75370 5.79083 5.96660 6.05695 6.34528 6.57872 7.10668 7.27853 7.80489 8.29946 9.12814 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.003179 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.627415 B = 8805.618828 C =11095.935062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C -0.108 4.108 4 C 0.045 3.955 5 N -0.529 5.529 6 C 0.013 3.987 7 C 0.058 3.942 8 O -0.388 6.388 9 C 0.081 3.919 10 C 0.037 3.963 11 H 0.083 0.917 12 C 0.515 3.485 13 O -0.558 6.558 14 N -0.706 5.706 15 C 0.145 3.855 16 H 0.057 0.943 17 C -0.104 4.104 18 C -0.130 4.130 19 C 0.171 3.829 20 N -0.607 5.607 21 C -0.268 4.268 22 H 0.052 0.948 23 C -0.043 4.043 24 N -0.928 5.928 25 Si 0.964 3.036 26 H -0.282 1.282 27 H -0.288 1.288 28 H -0.276 1.276 29 C 0.147 3.853 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.021 0.979 39 H 0.045 0.955 40 H 0.109 0.891 41 H 0.126 0.874 42 H 0.061 0.939 43 H 0.127 0.873 44 H 0.059 0.941 45 H 0.415 0.585 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.046 0.954 49 H 0.085 0.915 50 H 0.054 0.946 51 H 0.005 0.995 52 H 0.253 0.747 53 H 0.019 0.981 54 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.071 18.954 10.792 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C -0.146 4.146 4 C -0.082 4.082 5 N -0.255 5.255 6 C -0.114 4.114 7 C -0.018 4.018 8 O -0.306 6.306 9 C 0.004 3.996 10 C -0.075 4.075 11 H 0.100 0.900 12 C 0.301 3.699 13 O -0.436 6.436 14 N -0.359 5.359 15 C 0.038 3.962 16 H 0.076 0.924 17 C -0.142 4.142 18 C -0.169 4.169 19 C 0.045 3.955 20 N -0.331 5.331 21 C -0.399 4.399 22 H 0.070 0.930 23 C -0.239 4.239 24 N -0.574 5.574 25 Si 0.792 3.208 26 H -0.208 1.208 27 H -0.214 1.214 28 H -0.201 1.201 29 C 0.020 3.980 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.127 0.873 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.145 0.855 44 H 0.078 0.922 45 H 0.252 0.748 46 H 0.108 0.892 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.103 0.897 50 H 0.072 0.928 51 H 0.023 0.977 52 H 0.062 0.938 53 H 0.037 0.963 54 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -13.418 18.737 9.838 25.058 hybrid contribution 0.203 -1.830 0.083 1.843 sum -13.215 16.907 9.920 23.641 Atomic orbital electron populations 1.21721 0.94233 1.02042 1.02315 1.21491 0.97139 0.96412 1.01424 1.21656 0.92919 0.97244 1.02749 1.22424 0.96549 0.88342 1.00911 1.62056 1.01436 1.12360 1.49618 1.23046 1.00656 0.94287 0.93409 1.22925 0.80506 0.95130 1.03281 1.88000 1.19311 1.69440 1.53841 1.22627 0.97515 0.85761 0.93731 1.22318 0.90179 0.98428 0.96585 0.89952 1.20699 0.82540 0.80758 0.85879 1.90660 1.65974 1.47813 1.39154 1.45909 1.06123 1.52101 1.31773 1.21227 0.93635 0.90657 0.90668 0.92447 1.21613 0.92675 0.99930 0.99982 1.22014 1.00673 0.96187 0.98054 1.20727 0.84773 0.92052 0.97907 1.44221 1.13725 1.28523 1.46611 1.19388 0.92087 0.96387 1.32002 0.93026 1.25702 0.96977 0.98930 1.02253 1.70161 1.07481 1.35127 1.44629 0.85321 0.77751 0.78300 0.79416 1.20814 1.21432 1.20076 1.21199 0.93840 0.91552 0.91458 0.91627 0.92562 0.92493 0.93570 0.92266 0.90160 0.91607 0.90572 0.96085 0.93679 0.87260 0.85616 0.92111 0.85477 0.92232 0.74826 0.89211 0.90521 0.93494 0.89678 0.92765 0.97670 0.93825 0.96281 0.95453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.13 -2.55 5.93 30.60 0.18 -2.37 16 3 C -0.11 -2.15 4.48 30.59 0.14 -2.01 16 4 C 0.04 1.16 4.61 86.30 0.40 1.56 16 5 N -0.53 -12.21 4.51 -874.41 -3.94 -16.15 16 6 C 0.01 0.21 4.94 86.31 0.43 0.64 16 7 C 0.06 0.82 7.01 72.01 0.50 1.32 16 8 O -0.39 -6.90 10.83 -148.98 -1.61 -8.52 16 9 C 0.08 1.42 6.16 72.01 0.44 1.87 16 10 C 0.04 0.83 2.36 44.18 0.10 0.93 16 11 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 12 C 0.52 15.15 6.86 87.66 0.60 15.75 16 13 O -0.56 -21.97 13.36 -3.04 -0.04 -22.01 16 14 N -0.71 -18.46 4.98 -442.17 -2.20 -20.66 16 15 C 0.14 4.99 2.60 45.07 0.12 5.11 16 16 H 0.06 2.37 7.57 -2.39 -0.02 2.35 16 17 C -0.10 -2.98 5.35 30.62 0.16 -2.82 16 18 C -0.13 -4.61 6.08 30.67 0.19 -4.42 16 19 C 0.17 8.16 5.31 86.36 0.46 8.62 16 20 N -0.61 -31.79 3.00 -699.08 -2.09 -33.88 16 21 C -0.27 -15.72 9.58 84.04 0.81 -14.91 16 22 H 0.05 3.10 7.89 -2.91 -0.02 3.07 16 23 C -0.04 -2.46 4.91 84.86 0.42 -2.04 16 24 N -0.93 -55.43 11.19 21.65 0.24 -55.19 16 25 Si 0.96 46.58 29.59 68.60 2.03 48.61 16 26 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 28 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 29 C 0.15 6.50 6.10 86.36 0.53 7.02 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.24 6.28 -2.39 -0.01 1.23 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 2.62 5.48 -2.39 -0.01 2.61 16 38 H 0.02 0.55 8.08 -2.39 -0.02 0.53 16 39 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 40 H 0.11 1.44 6.05 -2.39 -0.01 1.42 16 41 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.13 1.55 7.67 -2.39 -0.02 1.54 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.41 7.45 8.09 -92.70 -0.75 6.70 16 46 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 47 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 50 H 0.05 2.96 6.04 -2.39 -0.01 2.94 16 51 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 52 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 53 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 54 H 0.03 1.33 7.93 -2.39 -0.02 1.31 16 Total: -1.00 -73.46 408.77 -1.32 -74.78 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.12 Total: 20.35 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 6.19 Total: 12.67 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -8.00 Total: -125.89 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.65 Total: -30.52 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -73.46 -1.32 -74.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008051221.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.374 kcal (2) G-P(sol) polarization free energy of solvation -73.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds