Wall clock time and date at job start Tue Mar 31 2020 23:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47449 * 2 1 4 4 C 1.52994 * 109.47449 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47341 * 179.97438 * 4 3 2 6 6 C 1.47010 * 111.00395 * 287.82135 * 5 4 3 7 7 C 1.53090 * 109.26101 * 177.60335 * 6 5 4 8 8 O 1.43014 * 109.25847 * 56.84903 * 7 6 5 9 9 C 1.43020 * 113.73796 * 301.33267 * 8 7 6 10 10 C 1.47014 * 110.99824 * 164.18150 * 5 4 3 11 11 H 1.08994 * 109.54121 * 62.44247 * 10 5 4 12 12 C 1.50696 * 109.51163 * 302.32904 * 10 5 4 13 13 O 1.21282 * 119.99829 * 333.48752 * 12 10 5 14 14 N 1.34777 * 120.00222 * 153.48944 * 12 10 5 15 15 C 1.46497 * 120.00184 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.47217 * 173.69602 * 15 14 12 17 17 H 1.08998 * 109.86795 * 56.59493 * 16 15 14 18 18 C 1.54318 * 109.88199 * 177.61125 * 16 15 14 19 19 C 1.55161 * 102.94040 * 141.76552 * 18 16 15 20 20 C 1.54905 * 101.61644 * 324.48047 * 19 18 16 21 21 N 1.47020 * 110.01078 * 295.49986 * 16 15 14 22 22 C 1.36943 * 125.64863 * 61.53417 * 21 16 15 23 23 H 1.07998 * 119.99904 * 328.65570 * 22 21 16 24 24 C 1.38807 * 119.99718 * 148.66568 * 22 21 16 25 25 N 1.31622 * 119.99951 * 159.42352 * 24 22 21 26 26 Si 1.86796 * 120.00482 * 339.41866 * 24 22 21 27 27 H 1.48501 * 109.47102 * 95.15691 * 26 24 22 28 28 H 1.48499 * 109.47313 * 215.15720 * 26 24 22 29 29 H 1.48507 * 109.47031 * 335.15806 * 26 24 22 30 30 H 1.09000 * 109.46991 * 300.00305 * 1 2 3 31 31 H 1.09005 * 109.47265 * 60.00497 * 1 2 3 32 32 H 1.09003 * 109.47019 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47713 * 239.99598 * 2 1 3 34 34 H 1.09004 * 109.47332 * 120.00052 * 2 1 3 35 35 H 1.08995 * 109.46602 * 59.99669 * 3 2 1 36 36 H 1.09005 * 109.46481 * 299.99983 * 3 2 1 37 37 H 1.08999 * 109.47338 * 59.99282 * 4 3 2 38 38 H 1.09007 * 109.46832 * 300.00139 * 4 3 2 39 39 H 1.09001 * 109.50502 * 57.66844 * 6 5 4 40 40 H 1.09000 * 109.53978 * 297.56433 * 6 5 4 41 41 H 1.08998 * 109.50952 * 296.91303 * 7 6 5 42 42 H 1.09001 * 109.50534 * 176.78162 * 7 6 5 43 43 H 1.09001 * 109.50203 * 298.72969 * 9 8 7 44 44 H 1.09001 * 109.54040 * 178.62825 * 9 8 7 45 45 H 0.97003 * 119.99590 * 0.02562 * 14 12 10 46 46 H 1.09001 * 109.46744 * 53.69967 * 15 14 12 47 47 H 1.08997 * 109.47431 * 293.69920 * 15 14 12 48 48 H 1.09003 * 110.72243 * 23.40661 * 18 16 15 49 49 H 1.08999 * 110.72097 * 260.13097 * 18 16 15 50 50 H 1.09001 * 111.00222 * 82.57723 * 19 18 16 51 51 H 1.09003 * 111.00659 * 206.38568 * 19 18 16 52 52 H 1.09002 * 110.36737 * 155.86459 * 20 19 18 53 53 H 1.09004 * 110.37041 * 278.18655 * 20 19 18 54 54 H 0.97000 * 120.00656 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8275 -0.0013 6 6 3.8388 3.4639 -1.3079 7 6 4.3076 4.9199 -1.2462 8 8 5.6817 4.9567 -0.8514 9 6 5.9329 4.3460 0.4172 10 6 5.4805 2.8840 0.3723 11 1 6.0730 2.3422 -0.3648 12 6 5.6694 2.2569 1.7294 13 8 4.7537 2.2447 2.5246 14 7 6.8560 1.7096 2.0597 15 6 7.0399 1.1005 3.3792 16 6 8.4093 0.4210 3.4410 17 1 9.1922 1.1439 3.2119 18 6 8.6378 -0.1725 4.8470 19 6 9.3689 -1.5076 4.5461 20 6 8.6854 -1.9471 3.2273 21 7 8.4617 -0.6931 2.4831 22 6 8.3249 -0.5850 1.1248 23 1 7.6979 0.1877 0.7051 24 6 8.9921 -1.4686 0.2876 25 7 8.5751 -1.6464 -0.9481 26 14 10.4817 -2.4053 0.9144 27 1 10.0573 -3.7437 1.3978 28 1 11.4650 -2.5655 -0.1868 29 1 11.1069 -1.6511 2.0306 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8901 37 1 3.9330 0.9287 -0.8908 38 1 3.9337 0.9285 0.8892 39 1 2.7771 3.4334 -1.5527 40 1 4.4041 2.9316 -2.0729 41 1 3.7055 5.4657 -0.5197 42 1 4.1987 5.3793 -2.2286 43 1 5.3780 4.8751 1.1920 44 1 6.9992 4.3904 0.6385 45 1 7.5885 1.7198 1.4238 46 1 6.2587 0.3596 3.5494 47 1 6.9822 1.8721 4.1469 48 1 7.6869 -0.3577 5.3467 49 1 9.2675 0.4856 5.4457 50 1 10.4362 -1.3436 4.3972 51 1 9.1944 -2.2358 5.3382 52 1 9.3401 -2.6119 2.6639 53 1 7.7351 -2.4380 3.4378 54 1 9.0414 -2.2636 -1.5334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028047196.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:02 Heat of formation + Delta-G solvation = -71.921062 kcal Electronic energy + Delta-G solvation = -31959.605192 eV Core-core repulsion = 27931.242864 eV Total energy + Delta-G solvation = -4028.362328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.61463 -40.06928 -39.19604 -37.57623 -35.51675 -35.23669 -34.64445 -32.75120 -31.78430 -30.90108 -30.49109 -27.53286 -26.78553 -26.06576 -24.97083 -23.68743 -22.66143 -21.98768 -21.75790 -21.45748 -20.73003 -19.12825 -18.02594 -17.94479 -17.67822 -17.43690 -16.75904 -16.55432 -16.38910 -16.09535 -15.67189 -15.59929 -15.28562 -15.19878 -15.12044 -14.84791 -14.43770 -14.28024 -14.00207 -13.89740 -13.71746 -13.61452 -13.36028 -13.07215 -12.97964 -12.96468 -12.63804 -12.51711 -12.28754 -12.25403 -12.08877 -12.00086 -11.93148 -11.75127 -11.65528 -11.53580 -11.39745 -11.35476 -10.98844 -10.67742 -10.57430 -9.94241 -9.52582 -8.84298 -8.18514 -5.52310 1.29095 1.39169 1.49606 1.54210 2.12280 2.42582 2.59334 2.91448 3.02785 3.34943 3.66259 3.70128 3.87245 3.89780 3.90516 3.93545 3.98704 4.06911 4.12188 4.18562 4.25126 4.25946 4.30658 4.35606 4.47318 4.50153 4.60363 4.63543 4.66202 4.68068 4.72637 4.76892 4.84349 4.87838 4.91383 4.96021 4.96977 4.99651 5.03559 5.13334 5.20466 5.30220 5.33146 5.41003 5.47094 5.53740 5.71448 5.83322 5.88390 6.02358 6.16549 6.57440 6.80053 7.23687 7.55253 8.19517 8.99875 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010028 B = 0.003620 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.587529 B = 7733.649114 C = 8088.781543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C -0.094 4.094 4 C 0.056 3.944 5 N -0.516 5.516 6 C 0.014 3.986 7 C 0.060 3.940 8 O -0.391 6.391 9 C 0.088 3.912 10 C 0.033 3.967 11 H 0.053 0.947 12 C 0.519 3.481 13 O -0.562 6.562 14 N -0.709 5.709 15 C 0.123 3.877 16 C 0.140 3.860 17 H 0.054 0.946 18 C -0.110 4.110 19 C -0.125 4.125 20 C 0.105 3.895 21 N -0.618 5.618 22 C -0.233 4.233 23 H 0.074 0.926 24 C -0.027 4.027 25 N -0.950 5.950 26 Si 0.945 3.055 27 H -0.290 1.290 28 H -0.316 1.316 29 H -0.254 1.254 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.022 0.978 38 H 0.047 0.953 39 H 0.113 0.887 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.128 0.872 43 H 0.068 0.932 44 H 0.114 0.886 45 H 0.408 0.592 46 H 0.040 0.960 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.066 0.934 51 H 0.098 0.902 52 H 0.021 0.979 53 H 0.026 0.974 54 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 10.079 5.172 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.132 4.132 4 C -0.072 4.072 5 N -0.241 5.241 6 C -0.113 4.113 7 C -0.016 4.016 8 O -0.309 6.309 9 C 0.010 3.990 10 C -0.080 4.080 11 H 0.071 0.929 12 C 0.304 3.696 13 O -0.441 6.441 14 N -0.361 5.361 15 C -0.002 4.002 16 C 0.034 3.966 17 H 0.072 0.928 18 C -0.148 4.148 19 C -0.163 4.163 20 C -0.019 4.019 21 N -0.344 5.344 22 C -0.362 4.362 23 H 0.092 0.908 24 C -0.223 4.223 25 N -0.595 5.595 26 Si 0.777 3.223 27 H -0.218 1.218 28 H -0.246 1.246 29 H -0.178 1.178 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.131 0.869 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.145 0.855 43 H 0.086 0.914 44 H 0.132 0.868 45 H 0.246 0.754 46 H 0.059 0.941 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.121 0.879 50 H 0.085 0.915 51 H 0.117 0.883 52 H 0.039 0.961 53 H 0.044 0.956 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.879 10.364 5.765 14.815 hybrid contribution 1.433 -1.872 -1.166 2.630 sum -7.446 8.493 4.599 12.195 Atomic orbital electron populations 1.21698 0.93800 1.02145 1.02371 1.21499 0.97490 0.96229 1.01248 1.21417 0.91999 0.97055 1.02727 1.22151 0.97738 0.87953 0.99307 1.62106 1.14050 1.18182 1.29798 1.23029 1.03562 0.96280 0.88478 1.22933 0.81615 0.94427 1.02629 1.87997 1.27788 1.78518 1.36596 1.22483 1.02228 0.87771 0.86536 1.22278 0.91655 0.99773 0.94248 0.92911 1.20331 0.82380 0.78200 0.88655 1.90629 1.41585 1.59516 1.52374 1.46322 1.14113 1.57233 1.18446 1.21889 0.98505 0.96177 0.83671 1.21499 0.93699 0.90450 0.90992 0.92832 1.22522 1.01580 0.96514 0.94183 1.22745 0.99361 0.98207 0.96003 1.22072 0.97105 0.89592 0.93167 1.44907 1.85590 1.02149 1.01776 1.18715 1.21221 1.16307 0.79949 0.90833 1.25876 1.00520 1.00685 0.95209 1.69951 1.41472 1.39281 1.08799 0.85806 0.81460 0.78434 0.76629 1.21827 1.24559 1.17833 0.92487 0.91610 0.92209 0.92450 0.93714 0.91788 0.90355 0.95970 0.93411 0.86897 0.94740 0.91228 0.85465 0.91361 0.86840 0.75404 0.94133 0.90420 0.90001 0.87856 0.91479 0.88349 0.96086 0.95574 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.91 71.98 0.71 -2.06 16 2 C -0.13 -3.19 5.93 30.59 0.18 -3.01 16 3 C -0.09 -2.48 5.27 30.59 0.16 -2.32 16 4 C 0.06 1.87 4.62 86.30 0.40 2.27 16 5 N -0.52 -15.87 4.23 -874.44 -3.69 -19.56 16 6 C 0.01 0.34 5.46 86.31 0.47 0.81 16 7 C 0.06 1.26 7.01 72.01 0.50 1.77 16 8 O -0.39 -10.44 10.83 -148.98 -1.61 -12.06 16 9 C 0.09 2.40 6.27 72.02 0.45 2.85 16 10 C 0.03 1.09 2.38 44.18 0.11 1.19 16 11 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 12 C 0.52 19.25 5.80 87.66 0.51 19.76 16 13 O -0.56 -23.59 15.47 -3.04 -0.05 -23.63 16 14 N -0.71 -25.81 4.40 -463.07 -2.04 -27.85 16 15 C 0.12 4.21 5.16 86.38 0.45 4.65 16 16 C 0.14 4.74 3.29 45.34 0.15 4.88 16 17 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 18 C -0.11 -2.81 6.48 31.78 0.21 -2.60 16 19 C -0.13 -3.60 7.08 31.99 0.23 -3.37 16 20 C 0.10 4.19 6.24 86.83 0.54 4.73 16 21 N -0.62 -27.03 2.75 -668.02 -1.84 -28.87 16 22 C -0.23 -12.22 9.61 84.03 0.81 -11.41 16 23 H 0.07 4.03 5.41 -2.91 -0.02 4.01 16 24 C -0.03 -1.52 5.43 84.86 0.46 -1.06 16 25 N -0.95 -57.77 13.97 21.65 0.30 -57.47 16 26 Si 0.95 45.76 24.78 68.60 1.70 47.46 16 27 H -0.29 -13.91 6.84 99.48 0.68 -13.23 16 28 H -0.32 -15.74 7.11 99.48 0.71 -15.04 16 29 H -0.25 -11.43 7.04 99.48 0.70 -10.73 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.04 1.27 8.14 -2.38 -0.02 1.26 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 1.71 6.73 -2.38 -0.02 1.69 16 37 H 0.02 0.78 8.05 -2.39 -0.02 0.76 16 38 H 0.05 1.93 5.92 -2.38 -0.01 1.92 16 39 H 0.11 2.17 6.63 -2.39 -0.02 2.15 16 40 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.41 15.40 6.28 -92.71 -0.58 14.81 16 46 H 0.04 1.59 8.12 -2.39 -0.02 1.57 16 47 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.08 1.93 7.85 -2.39 -0.02 1.92 16 49 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 52 H 0.02 0.94 2.97 -2.39 -0.01 0.93 16 53 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 54 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -69.49 406.17 -0.63 -70.12 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: 0.26 Total: 34.77 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 6.33 Total: 17.09 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -7.26 Total: -133.76 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.66 Total: -35.69 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.70 Total: 47.46 kcal Total: -69.49 -0.63 -70.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028047196.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.800 kcal (2) G-P(sol) polarization free energy of solvation -69.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds