Wall clock time and date at job start Tue Mar 31 2020 23:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47084 * 2 1 4 4 C 1.53001 * 109.47084 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47277 * 180.02562 * 4 3 2 6 6 C 1.47022 * 110.99876 * 295.13015 * 5 4 3 7 7 C 1.53095 * 109.25870 * 182.39074 * 6 5 4 8 8 O 1.43007 * 109.29629 * 303.13230 * 7 6 5 9 9 C 1.43099 * 113.68979 * 58.64464 * 8 7 6 10 10 C 1.47012 * 111.00149 * 58.76059 * 5 4 3 11 11 H 1.08997 * 109.50530 * 297.54835 * 10 5 4 12 12 C 1.50705 * 109.50222 * 57.67870 * 10 5 4 13 13 O 1.21281 * 120.00364 * 27.95168 * 12 10 5 14 14 N 1.34783 * 119.99787 * 207.95764 * 12 10 5 15 15 C 1.46493 * 119.99673 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.46946 * 183.93860 * 15 14 12 17 17 H 1.08997 * 109.87229 * 58.32924 * 16 15 14 18 18 C 1.54323 * 109.88056 * 297.31320 * 16 15 14 19 19 C 1.55158 * 102.94202 * 218.38791 * 18 16 15 20 20 C 1.54912 * 101.58034 * 35.50112 * 19 18 16 21 21 N 1.47022 * 109.88219 * 179.50323 * 16 15 14 22 22 C 1.36930 * 125.65031 * 298.31095 * 21 16 15 23 23 H 1.08002 * 120.00260 * 345.63984 * 22 21 16 24 24 C 1.38812 * 120.00021 * 165.63998 * 22 21 16 25 25 N 1.31617 * 120.00021 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00159 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47153 * 89.99863 * 26 24 22 28 28 H 1.48495 * 109.47198 * 210.00077 * 26 24 22 29 29 H 1.48504 * 109.46707 * 329.99895 * 26 24 22 30 30 H 1.08998 * 109.47069 * 300.00021 * 1 2 3 31 31 H 1.08997 * 109.47175 * 59.99788 * 1 2 3 32 32 H 1.09001 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47069 * 239.99978 * 2 1 3 34 34 H 1.08997 * 109.47175 * 120.00212 * 2 1 3 35 35 H 1.08998 * 109.47185 * 60.00050 * 3 2 1 36 36 H 1.08997 * 109.47287 * 300.00143 * 3 2 1 37 37 H 1.08998 * 109.47069 * 59.99978 * 4 3 2 38 38 H 1.08997 * 109.47175 * 300.00212 * 4 3 2 39 39 H 1.08996 * 109.50284 * 62.45471 * 6 5 4 40 40 H 1.08996 * 109.50370 * 302.32885 * 6 5 4 41 41 H 1.09007 * 109.50626 * 63.08357 * 7 6 5 42 42 H 1.08994 * 109.50628 * 183.17198 * 7 6 5 43 43 H 1.09003 * 109.49706 * 181.42247 * 9 8 7 44 44 H 1.08996 * 109.53258 * 61.32651 * 9 8 7 45 45 H 0.96995 * 119.99677 * 359.97438 * 14 12 10 46 46 H 1.09007 * 109.47133 * 303.93142 * 15 14 12 47 47 H 1.08993 * 109.47715 * 63.94004 * 15 14 12 48 48 H 1.08999 * 110.71897 * 336.75140 * 18 16 15 49 49 H 1.09003 * 110.71618 * 100.02757 * 18 16 15 50 50 H 1.08999 * 111.00486 * 153.57510 * 19 18 16 51 51 H 1.08998 * 111.00268 * 277.39092 * 19 18 16 52 52 H 1.09001 * 110.36151 * 81.82912 * 20 19 18 53 53 H 1.08997 * 110.36441 * 204.03845 * 20 19 18 54 54 H 0.97000 * 120.00397 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0013 6 6 3.6863 3.5189 -1.2413 7 6 4.2659 4.9358 -1.2246 8 8 3.7982 5.6240 -0.0615 9 6 4.1447 4.9776 1.1672 10 6 3.5638 3.5611 1.1747 11 1 2.4757 3.6137 1.1380 12 6 3.9919 2.8483 2.4316 13 8 5.0042 2.1803 2.4351 14 7 3.2499 2.9532 3.5519 15 6 3.6664 2.2608 4.7738 16 6 2.6079 2.4621 5.8601 17 1 1.6455 2.0850 5.5141 18 6 2.4902 3.9613 6.2068 19 6 2.2837 3.9472 7.7445 20 6 3.1735 2.7516 8.1669 21 7 3.0114 1.7606 7.0875 22 6 3.2036 0.4102 7.2085 23 1 2.8417 -0.2577 6.4408 24 6 3.8637 -0.1002 8.3178 25 7 4.3043 0.7137 9.2536 26 14 4.1266 -1.9423 8.4825 27 1 5.4178 -2.3164 7.8517 28 1 4.1527 -2.3120 9.9205 29 1 3.0181 -2.6629 7.8062 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.9337 0.9285 -0.8891 38 1 3.9330 0.9288 0.8908 39 1 2.6002 3.5707 -1.3166 40 1 4.0853 2.9724 -2.0959 41 1 5.3545 4.8835 -1.2033 42 1 3.9446 5.4710 -2.1181 43 1 3.7351 5.5434 2.0041 44 1 5.2297 4.9265 1.2588 45 1 2.4405 3.4877 3.5491 46 1 3.7778 1.1961 4.5681 47 1 4.6187 2.6666 5.1149 48 1 3.4066 4.4906 5.9456 49 1 1.6304 4.4065 5.7062 50 1 2.6365 4.8751 8.1946 51 1 1.2389 3.7657 7.9967 52 1 4.2155 3.0626 8.2429 53 1 2.8308 2.3405 9.1164 54 1 4.7653 0.3570 10.0290 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028047199.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:14 Heat of formation + Delta-G solvation = -80.970156 kcal Electronic energy + Delta-G solvation = -31583.122438 eV Core-core repulsion = 27554.367712 eV Total energy + Delta-G solvation = -4028.754726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.73781 -40.00229 -39.10878 -37.70360 -35.76944 -35.02878 -34.41776 -32.72181 -31.41145 -30.65338 -30.12604 -27.51129 -26.78217 -26.15575 -25.00456 -23.88027 -22.60416 -22.22246 -21.81003 -21.21355 -20.51476 -18.89211 -18.19237 -17.78738 -17.57854 -17.11077 -16.73496 -16.35377 -16.19030 -16.06050 -15.79127 -15.65824 -15.51029 -15.17972 -15.03991 -14.65425 -14.30342 -14.04969 -13.89688 -13.80580 -13.65751 -13.43184 -13.27321 -13.01253 -12.86621 -12.78795 -12.71353 -12.66305 -12.47799 -12.04824 -12.02764 -11.99036 -11.88479 -11.69582 -11.61212 -11.48362 -11.40453 -11.39705 -11.04248 -10.70766 -10.61388 -10.10839 -9.32868 -8.87204 -7.90247 -5.27575 1.41935 1.44728 1.51817 1.52012 1.98191 2.47125 2.66456 2.93890 3.29512 3.61644 3.69227 3.76130 3.80800 3.83932 3.95038 3.98610 3.99629 4.06505 4.12432 4.24000 4.26404 4.28831 4.39779 4.42977 4.54724 4.60327 4.61268 4.66762 4.70200 4.72792 4.78541 4.84010 4.90677 4.95794 4.96479 4.99890 5.08072 5.14484 5.19939 5.21628 5.26765 5.35479 5.38411 5.45706 5.55912 5.66226 5.75886 5.77961 5.94056 6.03946 6.21721 6.57099 7.07774 7.24900 7.74962 8.40418 9.20488 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011385 B = 0.003173 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.707916 B = 8822.157805 C =10016.252595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.148 4.148 4 C 0.052 3.948 5 N -0.532 5.532 6 C 0.018 3.982 7 C 0.055 3.945 8 O -0.385 6.385 9 C 0.079 3.921 10 C 0.041 3.959 11 H 0.091 0.909 12 C 0.515 3.485 13 O -0.568 6.568 14 N -0.706 5.706 15 C 0.134 3.866 16 C 0.149 3.851 17 H 0.048 0.952 18 C -0.114 4.114 19 C -0.133 4.133 20 C 0.173 3.827 21 N -0.611 5.611 22 C -0.240 4.240 23 H 0.074 0.926 24 C -0.058 4.058 25 N -0.944 5.944 26 Si 0.969 3.031 27 H -0.291 1.291 28 H -0.290 1.290 29 H -0.268 1.268 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.050 0.950 45 H 0.414 0.586 46 H 0.031 0.969 47 H 0.034 0.966 48 H 0.069 0.931 49 H 0.107 0.893 50 H 0.083 0.917 51 H 0.069 0.931 52 H -0.009 1.009 53 H 0.036 0.964 54 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 10.263 -22.856 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.187 4.187 4 C -0.076 4.076 5 N -0.257 5.257 6 C -0.109 4.109 7 C -0.021 4.021 8 O -0.303 6.303 9 C 0.001 3.999 10 C -0.071 4.071 11 H 0.109 0.891 12 C 0.300 3.700 13 O -0.446 6.446 14 N -0.359 5.359 15 C 0.007 3.993 16 C 0.041 3.959 17 H 0.066 0.934 18 C -0.152 4.152 19 C -0.172 4.172 20 C 0.048 3.952 21 N -0.335 5.335 22 C -0.369 4.369 23 H 0.092 0.908 24 C -0.252 4.252 25 N -0.592 5.592 26 Si 0.797 3.203 27 H -0.218 1.218 28 H -0.217 1.217 29 H -0.193 1.193 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.073 0.927 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.069 0.931 45 H 0.251 0.749 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.088 0.912 49 H 0.125 0.875 50 H 0.102 0.898 51 H 0.088 0.912 52 H 0.010 0.990 53 H 0.054 0.946 54 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.218 9.805 -22.663 25.726 hybrid contribution -0.160 -1.615 0.804 1.811 sum -7.378 8.190 -21.859 24.481 Atomic orbital electron populations 1.21745 0.94879 1.02001 1.02022 1.21418 0.96695 0.96055 1.01704 1.22199 0.96067 0.98079 1.02345 1.22275 0.93494 0.88964 1.02819 1.62185 1.59687 1.02392 1.01447 1.22957 1.00146 0.95752 0.92035 1.22936 0.98926 0.91465 0.88803 1.88023 1.78632 1.49408 1.14215 1.22558 0.99599 0.89316 0.88429 1.22266 1.00286 0.95437 0.89097 0.89130 1.20752 0.83272 0.80943 0.84986 1.90709 1.26931 1.41934 1.84986 1.45898 1.28383 1.51548 1.10077 1.21636 0.98349 0.95162 0.84139 1.21328 0.94527 0.93764 0.86244 0.93400 1.22625 1.02889 0.93437 0.96213 1.22866 0.99930 0.98139 0.96217 1.21274 0.94650 0.87734 0.91526 1.44740 1.80419 1.02608 1.05779 1.19260 1.29658 0.82555 1.05423 0.90833 1.25647 0.99708 1.01883 0.97928 1.70130 1.43736 1.34193 1.11143 0.85228 0.77983 0.80420 0.76645 1.21847 1.21663 1.19269 0.93254 0.91602 0.92483 0.91039 0.93900 0.92730 0.90001 0.89324 0.93067 0.92382 0.87679 0.92662 0.85415 0.85953 0.93141 0.74877 0.95053 0.94725 0.91237 0.87499 0.89807 0.91187 0.99045 0.94595 0.94290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.60 16 2 C -0.12 -2.16 5.93 30.59 0.18 -1.98 16 3 C -0.15 -2.61 4.51 30.59 0.14 -2.47 16 4 C 0.05 1.16 4.93 86.30 0.43 1.58 16 5 N -0.53 -11.64 4.48 -874.39 -3.92 -15.56 16 6 C 0.02 0.27 5.31 86.31 0.46 0.72 16 7 C 0.06 0.79 7.00 72.01 0.50 1.29 16 8 O -0.38 -7.16 10.83 -148.98 -1.61 -8.78 16 9 C 0.08 1.56 6.27 72.02 0.45 2.02 16 10 C 0.04 0.90 1.87 44.18 0.08 0.98 16 11 H 0.09 1.62 6.42 -2.39 -0.02 1.61 16 12 C 0.51 15.46 6.01 87.66 0.53 15.99 16 13 O -0.57 -23.11 15.37 -3.03 -0.05 -23.15 16 14 N -0.71 -19.58 5.36 -463.05 -2.48 -22.07 16 15 C 0.13 5.12 5.05 86.38 0.44 5.55 16 16 C 0.15 5.59 3.27 45.34 0.15 5.74 16 17 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 18 C -0.11 -3.28 5.87 31.78 0.19 -3.09 16 19 C -0.13 -4.47 7.09 31.99 0.23 -4.24 16 20 C 0.17 8.35 5.41 86.86 0.47 8.82 16 21 N -0.61 -30.56 3.13 -668.26 -2.09 -32.65 16 22 C -0.24 -13.44 9.80 84.03 0.82 -12.62 16 23 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 24 C -0.06 -3.32 5.47 84.86 0.46 -2.86 16 25 N -0.94 -57.12 10.57 21.65 0.23 -56.90 16 26 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 1.05 6.44 -2.39 -0.02 1.03 16 36 H 0.08 1.15 6.57 -2.39 -0.02 1.13 16 37 H 0.09 1.73 8.12 -2.39 -0.02 1.71 16 38 H 0.05 1.56 6.25 -2.39 -0.01 1.54 16 39 H 0.06 0.75 6.56 -2.39 -0.02 0.73 16 40 H 0.11 1.22 8.13 -2.39 -0.02 1.20 16 41 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.41 8.20 8.10 -92.71 -0.75 7.45 16 46 H 0.03 1.42 7.97 -2.38 -0.02 1.40 16 47 H 0.03 1.52 8.12 -2.39 -0.02 1.50 16 48 H 0.07 1.97 7.83 -2.39 -0.02 1.95 16 49 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 51 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 52 H -0.01 -0.46 8.07 -2.39 -0.02 -0.48 16 53 H 0.04 1.96 6.91 -2.39 -0.02 1.95 16 54 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -74.63 411.83 -1.54 -76.17 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.11 Total: 20.32 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 6.24 Total: 13.83 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -8.26 Total: -127.17 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.66 Total: -31.93 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -74.63 -1.54 -76.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028047199.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.800 kcal (2) G-P(sol) polarization free energy of solvation -74.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds