Wall clock time and date at job start Tue Mar 31 2020 23:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46958 * 2 1 4 4 C 1.52991 * 109.47376 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47580 * 180.02562 * 4 3 2 6 6 C 1.47019 * 110.99478 * 287.73181 * 5 4 3 7 7 C 1.53102 * 109.25651 * 177.60676 * 6 5 4 8 8 O 1.43014 * 109.25686 * 56.84762 * 7 6 5 9 9 C 1.43018 * 113.74153 * 301.33233 * 8 7 6 10 10 C 1.47007 * 111.00133 * 164.09815 * 5 4 3 11 11 H 1.08999 * 109.54468 * 62.43800 * 10 5 4 12 12 C 1.50700 * 109.50783 * 302.32384 * 10 5 4 13 13 O 1.21274 * 120.00006 * 331.14035 * 12 10 5 14 14 N 1.34782 * 119.99744 * 151.14315 * 12 10 5 15 15 C 1.46494 * 119.99438 * 180.02562 * 14 12 10 16 16 C 1.53005 * 109.46998 * 179.97438 * 15 14 12 17 17 H 1.09003 * 110.88709 * 57.42615 * 16 15 14 18 18 C 1.55154 * 111.00721 * 181.34929 * 16 15 14 19 19 C 1.54338 * 103.02187 * 153.38061 * 18 16 15 20 20 N 1.47021 * 107.26430 * 338.14369 * 19 18 16 21 21 C 1.36936 * 125.64541 * 178.85279 * 20 19 18 22 22 H 1.08000 * 120.00044 * 169.41085 * 21 20 19 23 23 C 1.38811 * 119.99959 * 349.40437 * 21 20 19 24 24 N 1.31621 * 119.99850 * 166.47594 * 23 21 20 25 25 Si 1.86799 * 120.00025 * 346.19338 * 23 21 20 26 26 H 1.48504 * 109.47252 * 184.63164 * 25 23 21 27 27 H 1.48499 * 109.47175 * 304.62791 * 25 23 21 28 28 H 1.48502 * 109.47212 * 64.63125 * 25 23 21 29 29 C 1.47424 * 108.70245 * 358.58243 * 20 19 18 30 30 H 1.08992 * 109.47543 * 299.99483 * 1 2 3 31 31 H 1.09002 * 109.47448 * 60.00275 * 1 2 3 32 32 H 1.09010 * 109.47123 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46769 * 240.00371 * 2 1 3 34 34 H 1.08994 * 109.46979 * 120.00432 * 2 1 3 35 35 H 1.09005 * 109.46889 * 60.00083 * 3 2 1 36 36 H 1.08998 * 109.47433 * 300.00501 * 3 2 1 37 37 H 1.08996 * 109.47198 * 59.99899 * 4 3 2 38 38 H 1.09006 * 109.47077 * 300.00321 * 4 3 2 39 39 H 1.08996 * 109.50576 * 57.67438 * 6 5 4 40 40 H 1.09001 * 109.54387 * 297.56079 * 6 5 4 41 41 H 1.09006 * 109.50250 * 296.91662 * 7 6 5 42 42 H 1.08992 * 109.54091 * 176.80651 * 7 6 5 43 43 H 1.09000 * 109.50455 * 298.73556 * 9 8 7 44 44 H 1.08994 * 109.54311 * 178.63177 * 9 8 7 45 45 H 0.96992 * 120.00016 * 359.97438 * 14 12 10 46 46 H 1.09004 * 109.47550 * 59.99836 * 15 14 12 47 47 H 1.08999 * 109.47663 * 299.99269 * 15 14 12 48 48 H 1.08999 * 110.72161 * 271.93892 * 18 16 15 49 49 H 1.09000 * 110.71811 * 35.03380 * 18 16 15 50 50 H 1.08999 * 109.98770 * 218.66194 * 19 18 16 51 51 H 1.09004 * 109.77509 * 97.49811 * 19 18 16 52 52 H 0.96995 * 119.99916 * 354.60336 * 24 23 21 53 53 H 1.09002 * 110.36419 * 143.19654 * 29 20 19 54 54 H 1.09000 * 110.36520 * 265.51458 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0595 2.8276 0.0000 6 6 3.8404 3.4643 -1.3069 7 6 4.3092 4.9205 -1.2441 8 8 5.6827 4.9571 -0.8474 9 6 5.9321 4.3460 0.4214 10 6 5.4797 2.8841 0.3754 11 1 6.0734 2.3425 -0.3610 12 6 5.6668 2.2566 1.7327 13 8 4.7639 2.2817 2.5420 14 7 6.8375 1.6674 2.0472 15 6 7.0191 1.0569 3.3664 16 6 8.4257 0.4627 3.4641 17 1 9.1831 1.2253 3.2826 18 6 8.6451 -0.2242 4.8379 19 6 9.7173 -1.2897 4.5267 20 7 9.6648 -1.5522 3.0810 21 6 10.4731 -2.4212 2.3979 22 1 10.2492 -2.6740 1.3720 23 6 11.5804 -2.9771 3.0239 24 7 12.2007 -4.0009 2.4767 25 14 12.1948 -2.2671 4.6387 26 1 13.4455 -2.9599 5.0401 27 1 12.4644 -0.8165 4.4710 28 1 11.1629 -2.4606 5.6890 29 6 8.5937 -0.7298 2.4898 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0278 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.9329 0.9290 -0.8908 38 1 3.9336 0.9286 0.8891 39 1 2.7791 3.4340 -1.5532 40 1 4.4069 2.9323 -2.0713 41 1 3.7060 5.4660 -0.5182 42 1 4.2016 5.3808 -2.2261 43 1 5.3762 4.8748 1.1956 44 1 6.9981 4.3904 0.6442 45 1 7.5595 1.6470 1.3997 46 1 6.2809 0.2671 3.5060 47 1 6.8903 1.8153 4.1386 48 1 9.0119 0.4921 5.5731 49 1 7.7250 -0.6942 5.1853 50 1 9.5036 -2.2055 5.0778 51 1 10.7028 -0.9119 4.7993 52 1 11.8393 -4.4166 1.6783 53 1 8.8893 -0.3744 1.5027 54 1 7.6677 -1.3014 2.4265 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028711890.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:18 Heat of formation + Delta-G solvation = -76.182459 kcal Electronic energy + Delta-G solvation = -30777.207342 eV Core-core repulsion = 26748.660227 eV Total energy + Delta-G solvation = -4028.547116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.66672 -40.09610 -39.33194 -37.59674 -36.13894 -35.25158 -34.59236 -32.87125 -31.87333 -30.67473 -30.23139 -27.76923 -27.25144 -25.87809 -24.61395 -23.68901 -22.76332 -22.25255 -21.82911 -21.44756 -20.89329 -19.56442 -18.46453 -17.71269 -17.61340 -17.32025 -17.03391 -16.56775 -16.35855 -16.13981 -15.76103 -15.64364 -15.41879 -15.26912 -15.17549 -15.13171 -14.48481 -14.44042 -14.11542 -13.91312 -13.85820 -13.39971 -13.28528 -13.21897 -13.03103 -12.96344 -12.71629 -12.49975 -12.25471 -12.20120 -12.03296 -11.93492 -11.88697 -11.67291 -11.59256 -11.39157 -11.38079 -11.11588 -11.02514 -10.69347 -10.58837 -10.13524 -9.49586 -9.10654 -8.67081 -5.49696 1.40659 1.46230 1.49847 1.72613 1.94923 2.55023 2.58117 2.88603 3.10352 3.25802 3.56277 3.66504 3.73881 3.78931 3.85906 3.87729 3.89865 3.93332 4.06525 4.19218 4.24293 4.24724 4.26476 4.34159 4.36481 4.50472 4.54836 4.61217 4.63074 4.67562 4.69215 4.76129 4.76954 4.80582 4.87780 4.92415 4.95299 4.95467 5.00294 5.03199 5.16318 5.21370 5.31085 5.33661 5.39955 5.41828 5.52559 5.73203 5.87499 6.02191 6.08554 6.46320 6.80668 7.14544 7.43482 8.07481 8.86041 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.002505 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.448323 B =11175.851415 C =12080.141119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.100 4.100 4 C 0.055 3.945 5 N -0.526 5.526 6 C 0.018 3.982 7 C 0.058 3.942 8 O -0.390 6.390 9 C 0.081 3.919 10 C 0.034 3.966 11 H 0.076 0.924 12 C 0.522 3.478 13 O -0.554 6.554 14 N -0.719 5.719 15 C 0.145 3.855 16 C -0.100 4.100 17 H 0.097 0.903 18 C -0.109 4.109 19 C 0.096 3.904 20 N -0.636 5.636 21 C -0.311 4.311 22 H 0.044 0.956 23 C -0.083 4.083 24 N -0.967 5.967 25 Si 1.113 2.887 26 H -0.316 1.316 27 H -0.279 1.279 28 H -0.252 1.252 29 C 0.137 3.863 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.124 0.876 43 H 0.060 0.940 44 H 0.119 0.881 45 H 0.411 0.589 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.105 0.895 49 H 0.085 0.915 50 H 0.032 0.968 51 H 0.028 0.972 52 H 0.247 0.753 53 H 0.042 0.958 54 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.377 19.848 -5.311 29.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.073 4.073 5 N -0.253 5.253 6 C -0.109 4.109 7 C -0.019 4.019 8 O -0.308 6.308 9 C 0.004 3.996 10 C -0.079 4.079 11 H 0.094 0.906 12 C 0.307 3.693 13 O -0.431 6.431 14 N -0.372 5.372 15 C 0.021 3.979 16 C -0.119 4.119 17 H 0.115 0.885 18 C -0.147 4.147 19 C -0.028 4.028 20 N -0.364 5.364 21 C -0.439 4.439 22 H 0.062 0.938 23 C -0.275 4.275 24 N -0.611 5.611 25 Si 0.941 3.059 26 H -0.246 1.246 27 H -0.207 1.207 28 H -0.177 1.177 29 C 0.013 3.987 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.126 0.874 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.142 0.858 43 H 0.078 0.922 44 H 0.137 0.863 45 H 0.247 0.753 46 H 0.077 0.923 47 H 0.101 0.899 48 H 0.124 0.876 49 H 0.104 0.896 50 H 0.049 0.951 51 H 0.045 0.955 52 H 0.055 0.945 53 H 0.060 0.940 54 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -20.939 20.041 -3.424 29.186 hybrid contribution -0.254 -1.423 -2.320 2.733 sum -21.193 18.617 -5.743 28.788 Atomic orbital electron populations 1.21729 0.94662 1.02006 1.02137 1.21487 0.96907 0.96259 1.01627 1.21449 0.92919 0.96966 1.02499 1.22189 0.97220 0.87766 1.00101 1.62022 1.14552 1.18621 1.30056 1.22972 1.03510 0.95881 0.88562 1.22915 0.81700 0.94938 1.02337 1.88014 1.27554 1.78743 1.36535 1.22541 1.02483 0.88252 0.86362 1.22316 0.91729 0.99596 0.94223 0.90614 1.20403 0.81940 0.77970 0.88991 1.90703 1.41941 1.59025 1.51441 1.46058 1.15914 1.57491 1.17694 1.21185 0.95006 0.97194 0.84504 1.22509 0.96695 0.96680 0.96064 0.88455 1.22557 0.98525 0.96901 0.96760 1.22183 0.97956 0.97618 0.85023 1.44919 1.39141 1.48746 1.03577 1.20065 1.06985 1.20084 0.96813 0.93785 1.27197 0.95005 0.97439 1.07862 1.71000 1.43590 1.23054 1.23499 0.83337 0.74816 0.74323 0.73381 1.24562 1.20696 1.17716 1.21779 0.90198 0.90705 0.96068 0.92886 0.91857 0.92364 0.91774 0.93275 0.92369 0.90683 0.94352 0.92650 0.87433 0.93618 0.91970 0.85798 0.92181 0.86292 0.75299 0.92263 0.89907 0.87646 0.89643 0.95051 0.95520 0.94459 0.93952 0.96078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.12 -2.02 5.93 30.59 0.18 -1.84 16 3 C -0.10 -1.71 5.27 30.59 0.16 -1.55 16 4 C 0.05 1.10 4.64 86.30 0.40 1.50 16 5 N -0.53 -10.16 4.23 -874.41 -3.70 -13.86 16 6 C 0.02 0.25 5.47 86.31 0.47 0.72 16 7 C 0.06 0.76 7.01 72.02 0.50 1.26 16 8 O -0.39 -6.94 10.83 -148.98 -1.61 -8.55 16 9 C 0.08 1.39 6.27 72.01 0.45 1.85 16 10 C 0.03 0.65 2.37 44.18 0.10 0.75 16 11 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 12 C 0.52 12.13 5.70 87.66 0.50 12.63 16 13 O -0.55 -16.89 15.65 -3.01 -0.05 -16.93 16 14 N -0.72 -14.87 5.41 -463.06 -2.50 -17.38 16 15 C 0.14 3.25 5.12 86.38 0.44 3.69 16 16 C -0.10 -2.61 3.11 -9.40 -0.03 -2.64 16 17 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 18 C -0.11 -2.99 6.42 31.79 0.20 -2.79 16 19 C 0.10 3.85 4.63 86.73 0.40 4.25 16 20 N -0.64 -30.04 3.33 -691.96 -2.30 -32.34 16 21 C -0.31 -18.06 10.57 84.03 0.89 -17.17 16 22 H 0.04 2.77 8.06 -2.91 -0.02 2.75 16 23 C -0.08 -4.98 5.50 84.86 0.47 -4.51 16 24 N -0.97 -63.01 13.70 21.65 0.30 -62.71 16 25 Si 1.11 53.65 24.54 68.60 1.68 55.33 16 26 H -0.32 -15.82 7.11 99.48 0.71 -15.12 16 27 H -0.28 -12.45 6.83 99.48 0.68 -11.77 16 28 H -0.25 -10.67 5.42 99.48 0.54 -10.14 16 29 C 0.14 4.97 6.41 86.85 0.56 5.52 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.07 1.03 6.74 -2.39 -0.02 1.01 16 37 H 0.04 0.72 8.05 -2.39 -0.02 0.70 16 38 H 0.05 1.40 5.99 -2.38 -0.01 1.39 16 39 H 0.11 1.16 6.64 -2.39 -0.02 1.15 16 40 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.41 7.21 8.34 -92.71 -0.77 6.44 16 46 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 47 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 48 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.08 2.13 8.04 -2.39 -0.02 2.11 16 50 H 0.03 1.34 6.85 -2.39 -0.02 1.33 16 51 H 0.03 1.12 3.65 -2.38 -0.01 1.11 16 52 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 53 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 54 H 0.02 0.79 8.00 -2.39 -0.02 0.77 16 Total: -1.00 -76.21 408.83 -1.91 -78.12 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -0.14 Total: 17.93 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 6.42 Total: 0.39 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -8.21 Total: -126.28 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -1.66 Total: -25.48 kcal Atomic # 14 Polarization: 53.65 SS G_CDS: 1.68 Total: 55.33 kcal Total: -76.21 -1.91 -78.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028711890.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.934 kcal (2) G-P(sol) polarization free energy of solvation -76.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds