Wall clock time and date at job start Tue Mar 31 2020 23:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52990 * 109.47209 * 2 1 4 4 C 1.53008 * 109.47260 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47205 * 179.97438 * 4 3 2 6 6 C 1.47010 * 111.00297 * 287.64328 * 5 4 3 7 7 C 1.53099 * 109.26440 * 177.60736 * 6 5 4 8 8 O 1.43016 * 109.29135 * 56.82558 * 7 6 5 9 9 C 1.43026 * 113.73692 * 301.40223 * 8 7 6 10 10 C 1.47012 * 111.00085 * 164.00449 * 5 4 3 11 11 H 1.09004 * 109.50197 * 62.45670 * 10 5 4 12 12 C 1.50700 * 109.51039 * 302.32916 * 10 5 4 13 13 O 1.21285 * 119.99317 * 332.98559 * 12 10 5 14 14 N 1.34769 * 120.00056 * 152.98555 * 12 10 5 15 15 C 1.46506 * 119.99738 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.46800 * 179.97438 * 15 14 12 17 17 H 1.08998 * 110.88901 * 302.57009 * 16 15 14 18 18 C 1.55165 * 111.00187 * 178.65045 * 16 15 14 19 19 C 1.54320 * 102.93950 * 206.42634 * 18 16 15 20 20 N 1.47022 * 107.27608 * 22.19147 * 19 18 16 21 21 C 1.36936 * 125.65197 * 181.09021 * 20 19 18 22 22 H 1.08002 * 120.00380 * 185.09213 * 21 20 19 23 23 C 1.38812 * 119.99559 * 5.10060 * 21 20 19 24 24 N 1.31614 * 120.00547 * 352.84212 * 23 21 20 25 25 Si 1.86808 * 119.99780 * 172.84259 * 23 21 20 26 26 H 1.48497 * 109.47124 * 94.98211 * 25 23 21 27 27 H 1.48494 * 109.47194 * 214.98126 * 25 23 21 28 28 H 1.48499 * 109.47122 * 334.98514 * 25 23 21 29 29 C 1.47425 * 108.69974 * 1.06100 * 20 19 18 30 30 H 1.08996 * 109.47288 * 300.00412 * 1 2 3 31 31 H 1.09003 * 109.46720 * 60.00457 * 1 2 3 32 32 H 1.08998 * 109.47120 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47218 * 239.99222 * 2 1 3 34 34 H 1.09003 * 109.46720 * 119.99543 * 2 1 3 35 35 H 1.09003 * 109.47666 * 59.99496 * 3 2 1 36 36 H 1.09003 * 109.46907 * 299.99428 * 3 2 1 37 37 H 1.08996 * 109.47272 * 59.99567 * 4 3 2 38 38 H 1.09003 * 109.46685 * 299.99553 * 4 3 2 39 39 H 1.09000 * 109.50662 * 57.67006 * 6 5 4 40 40 H 1.09001 * 109.50745 * 297.54623 * 6 5 4 41 41 H 1.08992 * 109.50956 * 176.78187 * 7 6 5 42 42 H 1.09000 * 109.50166 * 296.87347 * 7 6 5 43 43 H 1.08997 * 109.46968 * 298.66964 * 9 8 7 44 44 H 1.09003 * 109.54197 * 178.57519 * 9 8 7 45 45 H 0.96996 * 120.00350 * 359.97438 * 14 12 10 46 46 H 1.08990 * 109.47056 * 299.99877 * 15 14 12 47 47 H 1.08999 * 109.46948 * 60.00035 * 15 14 12 48 48 H 1.09001 * 110.71829 * 324.78534 * 18 16 15 49 49 H 1.08999 * 110.71814 * 88.06189 * 18 16 15 50 50 H 1.08996 * 109.88329 * 262.77249 * 19 18 16 51 51 H 1.09001 * 109.88536 * 141.60966 * 19 18 16 52 52 H 0.97000 * 120.00306 * 180.02562 * 24 23 21 53 53 H 1.09003 * 110.36805 * 217.02950 * 29 20 19 54 54 H 1.09003 * 110.36762 * 94.70855 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8274 -0.0013 6 6 3.8426 3.4624 -1.3092 7 6 4.3113 4.9186 -1.2478 8 8 5.6841 4.9567 -0.8486 9 6 5.9317 4.3464 0.4210 10 6 5.4794 2.8844 0.3763 11 1 6.0736 2.3418 -0.3590 12 6 5.6644 2.2587 1.7347 13 8 4.7491 2.2554 2.5305 14 7 6.8468 1.7029 2.0652 15 6 7.0265 1.0941 3.3856 16 6 8.4481 0.5407 3.5029 17 1 8.6502 -0.1820 2.7124 18 6 8.6881 -0.0835 4.9030 19 6 10.2140 0.0563 5.0867 20 7 10.6641 1.1349 4.1947 21 6 11.9576 1.5580 4.0436 22 1 12.1767 2.4146 3.4234 23 6 12.9874 0.8859 4.6876 24 7 12.7117 -0.0672 5.5524 25 14 14.7646 1.3340 4.3267 26 1 15.2444 2.3095 5.3383 27 1 15.6046 0.1107 4.3815 28 1 14.8578 1.9382 2.9734 29 6 9.4922 1.6850 3.4894 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9562 -0.8901 37 1 3.9330 0.9287 -0.8908 38 1 3.9337 0.9285 0.8892 39 1 2.7816 3.4317 -1.5571 40 1 4.4106 2.9291 -2.0715 41 1 4.2053 5.3769 -2.2309 42 1 3.7066 5.4652 -0.5241 43 1 5.3746 4.8762 1.1936 44 1 6.9975 4.3909 0.6453 45 1 7.5787 1.7052 1.4286 46 1 6.8642 1.8462 4.1576 47 1 6.3096 0.2829 3.5123 48 1 8.1544 0.4759 5.6713 49 1 8.3930 -1.1328 4.9131 50 1 10.7069 -0.8777 4.8170 51 1 10.4409 0.3122 6.1216 52 1 13.4313 -0.5366 6.0027 53 1 9.7548 1.9469 2.4644 54 1 9.1063 2.5569 4.0176 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028711896.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:22 Heat of formation + Delta-G solvation = -82.733464 kcal Electronic energy + Delta-G solvation = -30572.133105 eV Core-core repulsion = 26543.301917 eV Total energy + Delta-G solvation = -4028.831189 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.63229 -39.96448 -39.11058 -37.55354 -36.01987 -35.21464 -34.33932 -32.71212 -31.51887 -30.62360 -29.83842 -27.61877 -27.21670 -26.06085 -24.81444 -23.64730 -22.45092 -21.90741 -21.72527 -21.44303 -20.76610 -18.93138 -18.34041 -17.73770 -17.46019 -17.07497 -16.66171 -16.56679 -16.40399 -16.10268 -15.67821 -15.55655 -15.49689 -15.14462 -15.06336 -14.60493 -14.40334 -14.03175 -13.88834 -13.84561 -13.77910 -13.41334 -13.32234 -13.05496 -12.92085 -12.74745 -12.64080 -12.49522 -12.20914 -12.02725 -12.00920 -11.91382 -11.87945 -11.85874 -11.63069 -11.54354 -11.46452 -11.34720 -10.99793 -10.67931 -10.59563 -10.09877 -9.43859 -8.89080 -7.86102 -5.20138 1.46328 1.47409 1.50102 1.56985 1.97715 2.49717 2.61788 2.91116 3.32127 3.60295 3.63472 3.69220 3.85016 3.88614 3.90570 3.97673 4.02493 4.03801 4.10252 4.23306 4.27088 4.29972 4.40611 4.44344 4.53667 4.61928 4.65000 4.65709 4.70063 4.72170 4.80116 4.81283 4.90641 4.92372 4.96367 4.98920 5.06067 5.07277 5.07934 5.25001 5.34181 5.38198 5.44570 5.46127 5.47519 5.67465 5.77572 5.78226 5.93404 6.04177 6.20485 6.51496 7.10495 7.18751 7.78645 8.43249 9.25010 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.002295 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.984420 B =12195.846034 C =13618.304639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.102 4.102 4 C 0.055 3.945 5 N -0.530 5.530 6 C 0.020 3.980 7 C 0.056 3.944 8 O -0.390 6.390 9 C 0.079 3.921 10 C 0.038 3.962 11 H 0.083 0.917 12 C 0.520 3.480 13 O -0.556 6.556 14 N -0.716 5.716 15 C 0.147 3.853 16 C -0.095 4.095 17 H 0.089 0.911 18 C -0.123 4.123 19 C 0.182 3.818 20 N -0.629 5.629 21 C -0.241 4.241 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.951 5.951 25 Si 0.976 3.024 26 H -0.289 1.289 27 H -0.295 1.295 28 H -0.266 1.266 29 C 0.138 3.862 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.058 0.942 39 H 0.108 0.892 40 H 0.049 0.951 41 H 0.125 0.875 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.116 0.884 45 H 0.412 0.588 46 H 0.060 0.940 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.014 0.986 51 H 0.001 0.999 52 H 0.246 0.754 53 H 0.051 0.949 54 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.031 4.000 -16.979 28.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.140 4.140 4 C -0.072 4.072 5 N -0.256 5.256 6 C -0.107 4.107 7 C -0.021 4.021 8 O -0.308 6.308 9 C 0.001 3.999 10 C -0.075 4.075 11 H 0.101 0.899 12 C 0.306 3.694 13 O -0.434 6.434 14 N -0.369 5.369 15 C 0.023 3.977 16 C -0.115 4.115 17 H 0.107 0.893 18 C -0.161 4.161 19 C 0.057 3.943 20 N -0.355 5.355 21 C -0.370 4.370 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.600 5.600 25 Si 0.805 3.195 26 H -0.217 1.217 27 H -0.221 1.221 28 H -0.190 1.190 29 C 0.013 3.987 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.126 0.874 40 H 0.068 0.932 41 H 0.142 0.858 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.133 0.867 45 H 0.248 0.752 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.103 0.897 50 H 0.032 0.968 51 H 0.019 0.981 52 H 0.055 0.945 53 H 0.069 0.931 54 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -23.608 4.303 -16.106 28.901 hybrid contribution 1.950 -0.619 -0.098 2.048 sum -21.658 3.685 -16.205 27.299 Atomic orbital electron populations 1.21735 0.94908 1.02008 1.01984 1.21474 0.96687 0.96106 1.01812 1.21461 0.93127 0.97115 1.02289 1.22201 0.97040 0.87595 1.00385 1.61972 1.14589 1.19046 1.29997 1.22951 1.03504 0.95653 0.88610 1.22930 0.81686 0.95264 1.02212 1.88021 1.27645 1.78831 1.36292 1.22528 1.02322 0.88728 0.86297 1.22262 0.91852 0.99172 0.94181 0.89948 1.20454 0.82100 0.77883 0.88982 1.90706 1.41807 1.58448 1.52398 1.46030 1.14485 1.58662 1.17684 1.21141 0.95186 0.97255 0.84114 1.22414 0.92865 0.97744 0.98435 0.89269 1.22717 0.95806 1.01408 0.96197 1.20929 0.90454 0.90655 0.92308 1.44815 1.02891 1.39901 1.47943 1.19462 0.82751 1.10107 1.24715 0.89817 1.25681 1.02126 0.98915 0.99392 1.70198 1.31173 1.27950 1.30684 0.85091 0.79709 0.76551 0.78172 1.21656 1.22120 1.19022 1.21757 0.86837 0.94446 0.95666 0.93166 0.91973 0.92223 0.91417 0.93094 0.92763 0.90817 0.93852 0.92394 0.87424 0.93240 0.85752 0.92307 0.92637 0.86656 0.75163 0.92214 0.90861 0.91109 0.89675 0.96795 0.98067 0.94454 0.93109 0.96334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.10 16 2 C -0.12 -1.75 5.93 30.59 0.18 -1.57 16 3 C -0.10 -1.63 5.27 30.59 0.16 -1.47 16 4 C 0.06 1.02 4.63 86.31 0.40 1.42 16 5 N -0.53 -10.12 4.23 -874.38 -3.69 -13.81 16 6 C 0.02 0.27 5.47 86.32 0.47 0.75 16 7 C 0.06 0.77 7.01 72.02 0.50 1.27 16 8 O -0.39 -7.45 10.83 -148.98 -1.61 -9.06 16 9 C 0.08 1.52 6.27 72.02 0.45 1.97 16 10 C 0.04 0.74 2.38 44.18 0.11 0.84 16 11 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 12 C 0.52 12.68 5.77 87.66 0.51 13.18 16 13 O -0.56 -17.80 15.52 -3.05 -0.05 -17.85 16 14 N -0.72 -15.86 5.41 -463.06 -2.50 -18.37 16 15 C 0.15 3.76 5.12 86.38 0.44 4.21 16 16 C -0.09 -2.86 3.11 -9.40 -0.03 -2.89 16 17 H 0.09 2.57 8.14 -2.39 -0.02 2.56 16 18 C -0.12 -4.25 6.42 31.78 0.20 -4.04 16 19 C 0.18 8.88 5.38 86.73 0.47 9.34 16 20 N -0.63 -31.69 3.39 -691.99 -2.35 -34.04 16 21 C -0.24 -13.38 10.27 84.03 0.86 -12.52 16 22 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 23 C -0.07 -3.88 5.48 84.86 0.46 -3.42 16 24 N -0.95 -57.46 10.36 21.65 0.22 -57.24 16 25 Si 0.98 45.56 29.56 68.60 2.03 47.59 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 C 0.14 5.19 6.41 86.85 0.56 5.75 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 0.94 6.74 -2.39 -0.02 0.93 16 37 H 0.04 0.70 8.05 -2.39 -0.02 0.68 16 38 H 0.06 1.37 5.93 -2.39 -0.01 1.35 16 39 H 0.11 1.12 6.64 -2.39 -0.02 1.10 16 40 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.41 7.56 8.34 -92.71 -0.77 6.78 16 46 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 47 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 49 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 50 H 0.01 0.76 7.30 -2.39 -0.02 0.74 16 51 H 0.00 0.06 7.61 -2.39 -0.02 0.04 16 52 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 53 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 54 H 0.02 0.72 8.00 -2.39 -0.02 0.70 16 Total: -1.00 -71.67 416.61 -1.41 -73.08 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.08 Total: 17.96 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 6.46 Total: 11.73 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -8.32 Total: -123.45 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -1.66 Total: -26.91 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -71.67 -1.41 -73.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028711896.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.657 kcal (2) G-P(sol) polarization free energy of solvation -71.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds