Wall clock time and date at job start Tue Mar 31 2020 23:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46934 * 2 1 4 4 C 1.52998 * 109.46749 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46865 * 180.02562 * 4 3 2 6 6 C 1.47009 * 111.00496 * 46.36222 * 5 4 3 7 7 C 1.53095 * 109.25884 * 182.39626 * 6 5 4 8 8 O 1.43011 * 109.25856 * 303.14792 * 7 6 5 9 9 C 1.43022 * 113.73688 * 58.67228 * 8 7 6 10 10 C 1.47016 * 111.00041 * 169.99989 * 5 4 3 11 11 H 1.08994 * 109.53984 * 297.56435 * 10 5 4 12 12 C 1.50702 * 109.50792 * 57.67055 * 10 5 4 13 13 O 1.21286 * 120.00095 * 359.77945 * 12 10 5 14 14 N 1.34771 * 120.00307 * 179.78468 * 12 10 5 15 15 C 1.46498 * 120.00195 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.47279 * 179.97438 * 15 14 12 17 17 H 1.09000 * 110.91580 * 57.44514 * 16 15 14 18 18 C 1.55159 * 111.00775 * 181.34864 * 16 15 14 19 19 C 1.54318 * 102.94169 * 153.57384 * 18 16 15 20 20 N 1.47292 * 107.31103 * 337.81949 * 19 18 16 21 21 C 1.36935 * 125.79485 * 178.92456 * 20 19 18 22 22 H 1.08000 * 119.99782 * 174.82802 * 21 20 19 23 23 C 1.38813 * 119.99748 * 354.82496 * 21 20 19 24 24 N 1.31620 * 120.00341 * 7.02995 * 23 21 20 25 25 Si 1.86808 * 119.99539 * 187.02565 * 23 21 20 26 26 H 1.48502 * 109.46896 * 94.99260 * 25 23 21 27 27 H 1.48501 * 109.46951 * 214.98619 * 25 23 21 28 28 H 1.48492 * 109.47136 * 334.98799 * 25 23 21 29 29 C 1.47424 * 108.55382 * 358.92245 * 20 19 18 30 30 H 1.09005 * 109.46745 * 60.00026 * 1 2 3 31 31 H 1.08999 * 109.47387 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47082 * 300.00331 * 1 2 3 33 33 H 1.08994 * 109.47082 * 239.99669 * 2 1 3 34 34 H 1.08995 * 109.46671 * 119.99960 * 2 1 3 35 35 H 1.08996 * 109.47049 * 59.99684 * 3 2 1 36 36 H 1.09003 * 109.46990 * 299.99946 * 3 2 1 37 37 H 1.08996 * 109.47535 * 60.00066 * 4 3 2 38 38 H 1.09003 * 109.47399 * 299.99779 * 4 3 2 39 39 H 1.08998 * 109.50485 * 62.45669 * 6 5 4 40 40 H 1.09008 * 109.53854 * 302.35329 * 6 5 4 41 41 H 1.09005 * 109.50278 * 183.21873 * 7 6 5 42 42 H 1.08998 * 109.51021 * 63.08994 * 7 6 5 43 43 H 1.09001 * 109.50662 * 181.39272 * 9 8 7 44 44 H 1.08997 * 109.50383 * 61.26607 * 9 8 7 45 45 H 0.97008 * 119.99893 * 359.97438 * 14 12 10 46 46 H 1.08995 * 109.47512 * 59.99626 * 15 14 12 47 47 H 1.08995 * 109.47063 * 299.99757 * 15 14 12 48 48 H 1.08999 * 110.71715 * 271.93955 * 18 16 15 49 49 H 1.08997 * 110.71630 * 35.03316 * 18 16 15 50 50 H 1.09004 * 109.88141 * 97.22592 * 19 18 16 51 51 H 1.09001 * 109.88609 * 218.23118 * 19 18 16 52 52 H 0.96997 * 119.99818 * 179.97438 * 24 23 21 53 53 H 1.08992 * 110.36982 * 265.26424 * 29 20 19 54 54 H 1.09001 * 110.36388 * 143.04866 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0013 6 6 3.3419 3.6397 0.9944 7 6 3.8405 5.0853 0.9199 8 8 5.2559 5.1072 1.1235 9 6 5.9863 4.3269 0.1733 10 6 5.5095 2.8736 0.2402 11 1 5.7298 2.4632 1.2256 12 6 6.2192 2.0623 -0.8129 13 8 5.5808 1.4972 -1.6756 14 7 7.5633 1.9645 -0.7962 15 6 8.2531 1.1753 -1.8197 16 6 9.7623 1.2288 -1.5739 17 1 10.0070 0.8662 -0.5755 18 6 10.5314 0.4306 -2.6596 19 6 11.9111 1.1214 -2.6840 20 7 11.7331 2.4754 -2.1321 21 6 12.7222 3.4069 -1.9610 22 1 12.4737 4.4026 -1.6247 23 6 14.0440 3.0711 -2.2197 24 7 14.3337 1.9063 -2.7597 25 14 15.4118 4.2727 -1.8013 26 1 15.9625 3.9486 -0.4608 27 1 16.4897 4.1690 -2.8175 28 1 14.8706 5.6555 -1.7932 29 6 10.3102 2.6609 -1.7942 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9337 0.9286 -0.8891 38 1 3.9330 0.9288 0.8909 39 1 3.5269 3.2418 1.9922 40 1 2.2727 3.6121 0.7840 41 1 3.3524 5.6789 1.6930 42 1 3.6072 5.5007 -0.0604 43 1 7.0502 4.3720 0.4062 44 1 5.8155 4.7203 -0.8288 45 1 8.0739 2.4167 -0.1065 46 1 8.0311 1.5847 -2.8051 47 1 7.9132 0.1408 -1.7711 48 1 10.6291 -0.6161 -2.3718 49 1 10.0358 0.5187 -3.6264 50 1 12.6169 0.5614 -2.0705 51 1 12.2775 1.1816 -3.7088 52 1 15.2573 1.6719 -2.9408 53 1 9.7849 3.1456 -2.6170 54 1 10.2106 3.2497 -0.8822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028711898.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:26 Heat of formation + Delta-G solvation = -76.788436 kcal Electronic energy + Delta-G solvation = -30561.020119 eV Core-core repulsion = 26532.446726 eV Total energy + Delta-G solvation = -4028.573393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.66382 -39.96193 -39.10531 -37.64286 -36.01679 -35.12929 -34.36798 -32.75716 -31.49337 -30.54620 -29.79000 -27.65242 -27.15660 -26.03383 -24.84955 -23.65696 -22.64347 -21.95704 -21.43266 -21.42108 -20.80081 -18.92762 -18.37860 -17.64890 -17.32300 -17.03371 -16.75241 -16.58729 -16.49491 -15.92914 -15.84277 -15.70772 -15.46057 -15.16637 -15.03726 -14.67837 -14.39950 -13.99873 -13.87382 -13.78139 -13.64794 -13.41293 -13.28176 -13.01816 -12.89354 -12.76354 -12.64671 -12.56130 -12.22266 -12.11369 -12.00434 -11.84751 -11.84358 -11.80380 -11.61249 -11.53621 -11.45284 -11.35749 -10.93275 -10.68154 -10.47294 -10.09391 -9.37561 -8.88171 -7.85605 -5.19444 1.46684 1.48046 1.52123 1.57029 1.98967 2.50157 2.63794 2.91350 3.32744 3.61066 3.63484 3.67186 3.85951 3.92094 3.93188 3.98916 4.03276 4.04811 4.08040 4.19778 4.25659 4.33131 4.42930 4.45730 4.55581 4.62314 4.65613 4.69731 4.72209 4.75699 4.81405 4.82554 4.90745 4.93503 4.97196 4.99462 5.06650 5.09071 5.14444 5.23665 5.35234 5.39974 5.44131 5.48117 5.50910 5.67720 5.78634 5.80896 5.97828 6.05470 6.20830 6.51085 7.10736 7.19532 7.78894 8.44121 9.25706 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.002213 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.623362 B =12647.255326 C =14043.509710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.112 4.112 4 C 0.045 3.955 5 N -0.530 5.530 6 C 0.015 3.985 7 C 0.055 3.945 8 O -0.390 6.390 9 C 0.077 3.923 10 C 0.037 3.963 11 H 0.086 0.914 12 C 0.520 3.480 13 O -0.555 6.555 14 N -0.715 5.715 15 C 0.147 3.853 16 C -0.095 4.095 17 H 0.089 0.911 18 C -0.122 4.122 19 C 0.181 3.819 20 N -0.629 5.629 21 C -0.240 4.240 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.951 5.951 25 Si 0.976 3.024 26 H -0.286 1.286 27 H -0.297 1.297 28 H -0.267 1.267 29 C 0.138 3.862 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.025 0.975 39 H 0.046 0.954 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.059 0.941 43 H 0.119 0.881 44 H 0.057 0.943 45 H 0.412 0.588 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.070 0.930 50 H 0.014 0.986 51 H 0.001 0.999 52 H 0.246 0.754 53 H 0.018 0.982 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.306 -0.016 10.332 29.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.149 4.149 4 C -0.082 4.082 5 N -0.256 5.256 6 C -0.112 4.112 7 C -0.021 4.021 8 O -0.309 6.309 9 C -0.001 4.001 10 C -0.076 4.076 11 H 0.103 0.897 12 C 0.306 3.694 13 O -0.433 6.433 14 N -0.367 5.367 15 C 0.023 3.977 16 C -0.115 4.115 17 H 0.108 0.892 18 C -0.161 4.161 19 C 0.056 3.944 20 N -0.355 5.355 21 C -0.369 4.369 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.600 5.600 25 Si 0.805 3.195 26 H -0.213 1.213 27 H -0.224 1.224 28 H -0.191 1.191 29 C 0.013 3.987 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.044 0.956 39 H 0.064 0.936 40 H 0.129 0.871 41 H 0.141 0.859 42 H 0.077 0.923 43 H 0.136 0.864 44 H 0.076 0.924 45 H 0.248 0.752 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.103 0.897 49 H 0.089 0.911 50 H 0.032 0.968 51 H 0.019 0.981 52 H 0.055 0.945 53 H 0.036 0.964 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -27.550 -0.079 9.367 29.099 hybrid contribution 1.664 0.019 0.590 1.765 sum -25.887 -0.060 9.957 27.736 Atomic orbital electron populations 1.21737 0.94695 1.02034 1.02102 1.21468 0.96747 0.96154 1.01756 1.21681 0.93190 0.97502 1.02557 1.22470 0.96325 0.88012 1.01369 1.62056 1.01177 1.12761 1.49571 1.23012 1.00632 0.93994 0.93572 1.22944 0.80424 0.95618 1.03144 1.88016 1.19444 1.69619 1.53799 1.22620 0.97242 0.86604 0.93641 1.22278 0.90350 0.97852 0.97093 0.89690 1.20479 0.82259 0.80821 0.85806 1.90618 1.65984 1.47900 1.38836 1.45980 1.06196 1.52469 1.32102 1.21142 0.89571 0.95867 0.91087 1.22417 0.92725 0.96241 1.00111 0.89225 1.22705 0.95328 0.99430 0.98640 1.20970 0.93083 0.84886 0.95458 1.44864 1.03930 1.12954 1.73784 1.19466 0.86611 0.92981 1.37865 0.89793 1.25678 0.99601 0.99150 1.01709 1.70197 1.17427 1.23401 1.48966 0.85084 0.78803 0.78612 0.77008 1.21349 1.22440 1.19139 1.21754 0.84067 0.95358 0.97558 0.92722 0.92330 0.92085 0.92826 0.92043 0.90684 0.91758 0.89699 0.95641 0.93571 0.87149 0.85857 0.92264 0.86362 0.92441 0.75176 0.92229 0.90747 0.89684 0.91102 0.96776 0.98071 0.94479 0.96400 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.94 16 2 C -0.12 -1.73 5.93 30.60 0.18 -1.55 16 3 C -0.11 -1.68 4.49 30.59 0.14 -1.55 16 4 C 0.05 0.90 4.62 86.30 0.40 1.30 16 5 N -0.53 -10.44 4.51 -874.41 -3.94 -14.39 16 6 C 0.02 0.22 4.94 86.31 0.43 0.64 16 7 C 0.06 0.78 7.01 72.01 0.50 1.29 16 8 O -0.39 -7.45 10.83 -148.98 -1.61 -9.06 16 9 C 0.08 1.42 6.16 72.01 0.44 1.86 16 10 C 0.04 0.72 2.36 44.18 0.10 0.82 16 11 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 12 C 0.52 12.57 6.89 87.66 0.60 13.17 16 13 O -0.56 -17.25 13.69 -3.05 -0.04 -17.29 16 14 N -0.71 -15.64 5.31 -463.07 -2.46 -18.10 16 15 C 0.15 3.73 5.12 86.38 0.44 4.17 16 16 C -0.10 -2.85 3.11 -9.40 -0.03 -2.88 16 17 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 18 C -0.12 -4.22 6.42 31.78 0.20 -4.01 16 19 C 0.18 8.83 5.39 86.68 0.47 9.29 16 20 N -0.63 -31.59 3.40 -691.31 -2.35 -33.95 16 21 C -0.24 -13.30 10.27 84.03 0.86 -12.44 16 22 H 0.08 4.41 7.84 -2.91 -0.02 4.39 16 23 C -0.07 -3.89 5.48 84.86 0.46 -3.43 16 24 N -0.95 -57.42 10.38 21.65 0.22 -57.20 16 25 Si 0.98 45.60 29.56 68.60 2.03 47.63 16 26 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 27 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 29 C 0.14 5.16 6.40 86.86 0.56 5.72 16 30 H 0.05 0.61 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.90 6.27 -2.39 -0.01 0.88 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 2.22 5.48 -2.39 -0.01 2.21 16 38 H 0.03 0.50 8.08 -2.39 -0.02 0.48 16 39 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.11 1.23 6.05 -2.38 -0.01 1.21 16 41 H 0.12 1.13 8.14 -2.38 -0.02 1.12 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.12 1.83 7.67 -2.39 -0.02 1.81 16 44 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.41 7.41 7.82 -92.70 -0.72 6.68 16 46 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 47 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 49 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 50 H 0.01 0.77 7.31 -2.38 -0.02 0.75 16 51 H 0.00 0.06 7.62 -2.39 -0.02 0.04 16 52 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 53 H 0.02 0.69 8.00 -2.39 -0.02 0.67 16 54 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -71.07 412.21 -1.54 -72.61 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.14 Total: 18.27 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 6.48 Total: 11.47 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -8.53 Total: -123.63 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -1.65 Total: -26.35 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -71.07 -1.54 -72.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028711898.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.176 kcal (2) G-P(sol) polarization free energy of solvation -71.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds