Wall clock time and date at job start Tue Mar 31 2020 23:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47007 * 2 1 4 4 C 1.52990 * 109.47098 * 180.02562 * 3 2 1 5 5 N 1.46907 * 109.47284 * 179.97438 * 4 3 2 6 6 C 1.47012 * 110.99489 * 72.13439 * 5 4 3 7 7 C 1.53100 * 109.25505 * 182.39228 * 6 5 4 8 8 O 1.43012 * 109.25893 * 303.15093 * 7 6 5 9 9 C 1.43021 * 113.77533 * 58.64793 * 8 7 6 10 10 C 1.47010 * 111.00010 * 195.77079 * 5 4 3 11 11 H 1.09002 * 109.50851 * 297.58476 * 10 5 4 12 12 C 1.50693 * 109.51155 * 57.67437 * 10 5 4 13 13 O 1.21283 * 119.99877 * 28.37515 * 12 10 5 14 14 N 1.34774 * 120.00293 * 208.38237 * 12 10 5 15 15 C 1.46507 * 120.00157 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47063 * 179.97438 * 15 14 12 17 17 H 1.08997 * 110.91797 * 302.55013 * 16 15 14 18 18 C 1.55447 * 111.11727 * 178.55566 * 16 15 14 19 19 C 1.54320 * 102.97157 * 206.46592 * 18 16 15 20 20 N 1.47022 * 107.27043 * 22.19332 * 19 18 16 21 21 C 1.36939 * 125.64949 * 181.08578 * 20 19 18 22 22 H 1.08006 * 119.99785 * 174.11453 * 21 20 19 23 23 C 1.38806 * 119.99944 * 354.10611 * 21 20 19 24 24 N 1.31627 * 120.00140 * 353.61384 * 23 21 20 25 25 Si 1.86799 * 120.00250 * 173.61686 * 23 21 20 26 26 H 1.48498 * 109.47676 * 94.99092 * 25 23 21 27 27 H 1.48500 * 109.47305 * 214.99427 * 25 23 21 28 28 H 1.48507 * 109.46787 * 334.98950 * 25 23 21 29 29 C 1.47427 * 108.70485 * 1.05649 * 20 19 18 30 30 H 1.08996 * 109.47055 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47332 * 299.99872 * 1 2 3 32 32 H 1.09003 * 109.47500 * 60.00000 * 1 2 3 33 33 H 1.08998 * 109.46657 * 240.00256 * 2 1 3 34 34 H 1.08990 * 109.46960 * 120.00275 * 2 1 3 35 35 H 1.09004 * 109.46970 * 59.99906 * 3 2 1 36 36 H 1.09003 * 109.46990 * 300.00312 * 3 2 1 37 37 H 1.09004 * 109.47300 * 60.00092 * 4 3 2 38 38 H 1.08996 * 109.47564 * 300.00400 * 4 3 2 39 39 H 1.08999 * 109.50635 * 302.32786 * 6 5 4 40 40 H 1.09003 * 109.50706 * 62.41733 * 6 5 4 41 41 H 1.09006 * 109.50405 * 63.09031 * 7 6 5 42 42 H 1.09003 * 109.50522 * 183.17157 * 7 6 5 43 43 H 1.09005 * 109.54421 * 181.43913 * 9 8 7 44 44 H 1.09005 * 109.47352 * 61.30865 * 9 8 7 45 45 H 0.97002 * 119.99948 * 359.97438 * 14 12 10 46 46 H 1.08998 * 109.47133 * 59.99436 * 15 14 12 47 47 H 1.08997 * 109.47058 * 300.00018 * 15 14 12 48 48 H 1.08998 * 110.70499 * 88.09111 * 18 16 15 49 49 H 1.08996 * 110.70694 * 324.83667 * 18 16 15 50 50 H 1.09001 * 109.88454 * 262.77582 * 19 18 16 51 51 H 1.08996 * 109.88843 * 141.60684 * 19 18 16 52 52 H 0.97000 * 119.99877 * 180.02562 * 24 23 21 53 53 H 1.08998 * 110.36149 * 94.70949 * 29 20 19 54 54 H 1.08995 * 110.37048 * 216.92555 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0596 2.8276 -0.0013 6 6 3.8388 3.4649 1.3050 7 6 4.3076 4.9210 1.2420 8 8 5.6817 4.9575 0.8472 9 6 5.9337 4.3455 -0.4207 10 6 5.4803 2.8839 -0.3749 11 1 6.0725 2.3421 0.3627 12 6 5.6693 2.2557 -1.7316 13 8 4.7644 2.2728 -2.5390 14 7 6.8436 1.6748 -2.0476 15 6 7.0270 1.0636 -3.3664 16 6 8.4382 0.4810 -3.4666 17 1 9.1901 1.2497 -3.2887 18 6 8.6623 -0.2104 -4.8407 19 6 9.7474 -1.2618 -4.5266 20 7 9.6955 -1.5240 -3.0808 21 6 10.5128 -2.3830 -2.3957 22 1 10.4587 -2.4360 -1.3183 23 6 11.4107 -3.1856 -3.0858 24 7 11.3907 -3.2147 -4.4016 25 14 12.6472 -4.2246 -2.1474 26 1 12.1062 -5.5957 -1.9668 27 1 13.9190 -4.2910 -2.9112 28 1 12.8998 -3.6130 -0.8178 29 6 8.6184 -0.7085 -2.4908 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9329 0.9289 -0.8909 38 1 3.9337 0.9286 0.8890 39 1 2.7771 3.4347 1.5499 40 1 4.4041 2.9326 2.0699 41 1 3.7054 5.4662 0.5152 42 1 4.1981 5.3814 2.2239 43 1 7.0004 4.3890 -0.6410 44 1 5.3794 4.8744 -1.1961 45 1 7.5674 1.6615 -1.4020 46 1 6.8907 1.8198 -4.1395 47 1 6.2945 0.2682 -3.5033 48 1 9.0221 0.5065 -5.5787 49 1 7.7467 -0.6920 -5.1837 50 1 10.7292 -0.8737 -4.7979 51 1 9.5444 -2.1802 -5.0773 52 1 12.0179 -3.7760 -4.8839 53 1 7.6973 -1.2876 -2.4243 54 1 8.9116 -0.3490 -1.5045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028711900.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:29 Heat of formation + Delta-G solvation = -83.444967 kcal Electronic energy + Delta-G solvation = -30660.840972 eV Core-core repulsion = 26631.978930 eV Total energy + Delta-G solvation = -4028.862042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.63235 -39.96280 -39.10734 -37.56278 -36.02603 -35.22507 -34.34268 -32.71285 -31.51905 -30.63641 -29.85130 -27.62239 -27.23617 -26.06064 -24.81606 -23.66273 -22.45433 -21.92190 -21.74209 -21.43882 -20.78435 -18.94015 -18.34332 -17.67173 -17.53902 -17.13438 -16.65770 -16.55188 -16.41807 -16.04966 -15.67440 -15.64712 -15.42745 -15.13431 -15.11153 -14.61243 -14.41417 -14.02897 -13.90491 -13.85059 -13.77607 -13.43377 -13.33422 -13.08278 -12.93574 -12.73522 -12.67267 -12.48827 -12.22674 -12.02650 -12.00910 -11.92359 -11.90835 -11.85845 -11.64263 -11.57579 -11.42376 -11.36338 -11.00099 -10.72847 -10.59643 -10.10332 -9.45800 -8.89620 -7.85187 -5.22559 1.45412 1.46682 1.49619 1.56088 1.97978 2.48831 2.60870 2.91250 3.32025 3.58950 3.62460 3.69934 3.81716 3.90024 3.90759 3.96137 4.02109 4.03329 4.09236 4.21854 4.27067 4.28924 4.39226 4.43624 4.53372 4.60345 4.64267 4.65474 4.69161 4.71563 4.79067 4.79474 4.90146 4.90826 4.94980 4.97928 5.04816 5.05685 5.06904 5.23540 5.33612 5.36289 5.42681 5.43804 5.45888 5.67267 5.76254 5.77475 5.91227 6.04623 6.20278 6.51123 7.09143 7.18513 7.77363 8.41858 9.24198 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.002410 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.527101 B =11617.395415 C =12347.093739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.101 4.101 4 C 0.055 3.945 5 N -0.528 5.528 6 C 0.018 3.982 7 C 0.057 3.943 8 O -0.390 6.390 9 C 0.081 3.919 10 C 0.035 3.965 11 H 0.079 0.921 12 C 0.520 3.480 13 O -0.556 6.556 14 N -0.716 5.716 15 C 0.147 3.853 16 C -0.095 4.095 17 H 0.093 0.907 18 C -0.122 4.122 19 C 0.178 3.822 20 N -0.628 5.628 21 C -0.242 4.242 22 H 0.083 0.917 23 C -0.068 4.068 24 N -0.951 5.951 25 Si 0.977 3.023 26 H -0.288 1.288 27 H -0.294 1.294 28 H -0.266 1.266 29 C 0.138 3.862 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.040 0.960 39 H 0.107 0.893 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.058 0.942 45 H 0.412 0.588 46 H 0.076 0.924 47 H 0.056 0.944 48 H 0.087 0.913 49 H 0.069 0.931 50 H 0.000 1.000 51 H 0.018 0.982 52 H 0.246 0.754 53 H 0.014 0.986 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.101 16.456 12.134 27.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.073 4.073 5 N -0.254 5.254 6 C -0.109 4.109 7 C -0.019 4.019 8 O -0.308 6.308 9 C 0.004 3.996 10 C -0.077 4.077 11 H 0.097 0.903 12 C 0.306 3.694 13 O -0.434 6.434 14 N -0.369 5.369 15 C 0.023 3.977 16 C -0.115 4.115 17 H 0.111 0.889 18 C -0.160 4.160 19 C 0.053 3.947 20 N -0.354 5.354 21 C -0.371 4.371 22 H 0.101 0.899 23 C -0.261 4.261 24 N -0.600 5.600 25 Si 0.806 3.194 26 H -0.215 1.215 27 H -0.221 1.221 28 H -0.191 1.191 29 C 0.013 3.987 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.125 0.875 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.076 0.924 45 H 0.248 0.752 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.105 0.895 49 H 0.087 0.913 50 H 0.019 0.981 51 H 0.036 0.964 52 H 0.056 0.944 53 H 0.031 0.969 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.713 16.675 11.281 27.487 hybrid contribution 1.524 -1.800 0.571 2.427 sum -17.189 14.875 11.852 25.636 Atomic orbital electron populations 1.21730 0.94709 1.01995 1.02102 1.21488 0.96865 0.96263 1.01661 1.21450 0.92993 0.96965 1.02440 1.22189 0.97156 0.87760 1.00171 1.62003 1.14543 1.18662 1.30190 1.22970 1.03505 0.95834 0.88572 1.22915 0.81685 0.94986 1.02321 1.88008 1.27492 1.78700 1.36578 1.22544 1.02469 0.88278 0.86356 1.22300 0.91750 0.99533 0.94114 0.90306 1.20460 0.81947 0.77961 0.89049 1.90705 1.42048 1.58991 1.51642 1.46033 1.15587 1.57628 1.17627 1.21134 0.95149 0.96941 0.84479 1.22470 0.96084 0.96789 0.96110 0.88864 1.22753 0.98924 0.97773 0.96576 1.20967 0.94457 0.94861 0.84417 1.44811 1.37210 1.48622 1.04735 1.19464 1.12628 1.13889 0.91132 0.89917 1.25678 1.02436 1.01386 0.96609 1.70192 1.39621 1.43634 1.06567 0.85080 0.78085 0.78411 0.77873 1.21534 1.22104 1.19066 1.21728 0.90118 0.90866 0.95957 0.92355 0.91805 0.93002 0.93358 0.91619 0.90616 0.92538 0.92729 0.94135 0.87474 0.93451 0.92107 0.85743 0.86232 0.92353 0.75167 0.90528 0.92594 0.89461 0.91255 0.98147 0.96408 0.94444 0.96870 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -2.07 5.93 30.60 0.18 -1.89 16 3 C -0.10 -1.76 5.26 30.59 0.16 -1.60 16 4 C 0.05 1.12 4.64 86.30 0.40 1.52 16 5 N -0.53 -10.40 4.23 -874.41 -3.70 -14.10 16 6 C 0.02 0.26 5.47 86.32 0.47 0.73 16 7 C 0.06 0.76 7.01 72.02 0.50 1.27 16 8 O -0.39 -6.98 10.82 -148.98 -1.61 -8.59 16 9 C 0.08 1.43 6.28 72.02 0.45 1.88 16 10 C 0.04 0.69 2.37 44.18 0.10 0.80 16 11 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 12 C 0.52 12.74 5.72 87.66 0.50 13.24 16 13 O -0.56 -17.91 15.62 -3.04 -0.05 -17.96 16 14 N -0.72 -15.93 5.41 -463.07 -2.50 -18.43 16 15 C 0.15 3.78 5.14 86.38 0.44 4.22 16 16 C -0.09 -2.85 3.12 -9.30 -0.03 -2.88 16 17 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 18 C -0.12 -4.21 6.43 31.88 0.21 -4.00 16 19 C 0.18 8.69 5.41 86.73 0.47 9.16 16 20 N -0.63 -31.70 3.40 -692.00 -2.35 -34.05 16 21 C -0.24 -13.45 10.26 84.03 0.86 -12.59 16 22 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 23 C -0.07 -3.88 5.46 84.86 0.46 -3.42 16 24 N -0.95 -57.56 10.45 21.65 0.23 -57.33 16 25 Si 0.98 45.58 29.56 68.60 2.03 47.61 16 26 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 29 C 0.14 5.27 6.40 86.86 0.56 5.82 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.05 6.73 -2.39 -0.02 1.04 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.43 5.97 -2.39 -0.01 1.41 16 38 H 0.04 0.76 8.05 -2.39 -0.02 0.74 16 39 H 0.11 1.17 6.63 -2.39 -0.02 1.15 16 40 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.41 7.56 8.34 -92.71 -0.77 6.79 16 46 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 48 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 49 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 50 H 0.00 0.01 7.87 -2.39 -0.02 0.00 16 51 H 0.02 1.00 7.04 -2.39 -0.02 0.98 16 52 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 53 H 0.01 0.53 8.00 -2.39 -0.02 0.51 16 54 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -71.94 416.82 -1.41 -73.35 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.08 Total: 18.57 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 6.46 Total: 10.93 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -8.33 Total: -123.91 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.66 Total: -26.55 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -71.94 -1.41 -73.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028711900.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.098 kcal (2) G-P(sol) polarization free energy of solvation -71.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds