Wall clock time and date at job start Tue Mar 31 2020 23:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47010 * 2 1 4 4 C 1.53002 * 109.46536 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.46640 * 180.02562 * 4 3 2 6 6 C 1.47020 * 111.03534 * 297.65641 * 5 4 3 7 7 C 1.53099 * 109.29087 * 177.65199 * 6 5 4 8 8 O 1.43010 * 109.25783 * 56.82897 * 7 6 5 9 9 C 1.43012 * 113.74104 * 301.32551 * 8 7 6 10 10 C 1.47013 * 110.99790 * 174.00168 * 5 4 3 11 11 H 1.08998 * 109.50956 * 62.41293 * 10 5 4 12 12 C 1.50700 * 109.50740 * 302.32492 * 10 5 4 13 13 O 1.21278 * 119.99983 * 334.64757 * 12 10 5 14 14 N 1.34773 * 119.99912 * 154.64022 * 12 10 5 15 15 C 1.46512 * 119.99697 * 185.66079 * 14 12 10 16 16 C 1.46495 * 120.00138 * 5.66160 * 14 12 10 17 17 H 1.08993 * 110.91907 * 352.43481 * 16 14 12 18 18 C 1.55161 * 111.00432 * 228.52794 * 16 14 12 19 19 C 1.54326 * 102.94323 * 277.42924 * 18 16 14 20 20 N 1.47020 * 107.27062 * 337.80705 * 19 18 16 21 21 C 1.36942 * 125.64975 * 178.97943 * 20 19 18 22 22 H 1.07994 * 120.00012 * 179.97438 * 21 20 19 23 23 C 1.38817 * 119.99815 * 359.95463 * 21 20 19 24 24 N 1.31620 * 120.00001 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99739 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47260 * 90.00357 * 25 23 21 27 27 H 1.48500 * 109.46594 * 210.00282 * 25 23 21 28 28 H 1.48502 * 109.47056 * 329.99588 * 25 23 21 29 29 C 1.47425 * 108.70330 * 358.94109 * 20 19 18 30 30 H 1.09001 * 109.47160 * 300.00223 * 1 2 3 31 31 H 1.09003 * 109.46841 * 59.99899 * 1 2 3 32 32 H 1.09004 * 109.47281 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47160 * 239.99777 * 2 1 3 34 34 H 1.08994 * 109.46832 * 120.00386 * 2 1 3 35 35 H 1.09002 * 109.46989 * 60.00581 * 3 2 1 36 36 H 1.08994 * 109.47638 * 299.99892 * 3 2 1 37 37 H 1.08998 * 109.47349 * 60.00843 * 4 3 2 38 38 H 1.08988 * 109.47843 * 299.99903 * 4 3 2 39 39 H 1.08999 * 109.50721 * 57.69514 * 6 5 4 40 40 H 1.09000 * 109.50911 * 297.60582 * 6 5 4 41 41 H 1.08999 * 109.50867 * 296.89396 * 7 6 5 42 42 H 1.09002 * 109.53793 * 176.78516 * 7 6 5 43 43 H 1.08997 * 109.50926 * 298.74304 * 9 8 7 44 44 H 1.09003 * 109.50897 * 178.60393 * 9 8 7 45 45 H 1.08998 * 109.46703 * 244.29947 * 15 14 12 46 46 H 1.08994 * 109.46864 * 4.29948 * 15 14 12 47 47 H 1.09002 * 109.46689 * 124.29962 * 15 14 12 48 48 H 1.09003 * 110.72082 * 35.79080 * 18 16 14 49 49 H 1.08999 * 110.71901 * 159.06951 * 18 16 14 50 50 H 1.08998 * 109.88639 * 97.22494 * 19 18 16 51 51 H 1.08999 * 109.88330 * 218.39124 * 19 18 16 52 52 H 0.96997 * 119.99845 * 179.97438 * 24 23 21 53 53 H 1.09007 * 110.36526 * 265.28669 * 29 20 19 54 54 H 1.09003 * 110.36974 * 142.96772 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8274 0.0013 6 6 3.6356 3.5376 -1.2141 7 6 4.1161 4.9896 -1.1451 8 8 5.5358 5.0091 -0.9743 9 6 5.9837 4.3278 0.2006 10 6 5.5222 2.8690 0.1453 11 1 5.9862 2.3726 -0.7069 12 6 5.9228 2.1659 1.4166 13 8 5.1386 2.0856 2.3382 14 7 7.1527 1.6263 1.5294 15 6 7.5003 0.8366 2.7135 16 6 8.1418 1.8294 0.4680 17 1 7.6915 2.3196 -0.3950 18 6 8.8051 0.4868 0.0617 19 6 9.9036 0.3066 1.1305 20 7 10.1995 1.6373 1.6811 21 6 11.1059 1.9080 2.6712 22 1 11.2512 2.9239 3.0073 23 6 11.8377 0.8763 3.2432 24 7 11.6606 -0.3619 2.8335 25 14 13.0736 1.2454 4.5944 26 1 12.4005 1.1674 5.9157 27 1 14.1763 0.2522 4.5411 28 1 13.6267 2.6098 4.4001 29 6 9.3594 2.6323 0.9900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 3.9337 0.9285 -0.8892 38 1 3.9330 0.9287 0.8907 39 1 2.5483 3.5171 -1.2870 40 1 4.0683 3.0523 -2.0890 41 1 3.6411 5.4905 -0.3016 42 1 3.8535 5.5048 -2.0692 43 1 5.5630 4.8093 1.0833 44 1 7.0721 4.3636 0.2495 45 1 8.2928 1.3408 3.2665 46 1 6.6224 0.7319 3.3508 47 1 7.8444 -0.1502 2.4038 48 1 8.0841 -0.3293 0.1084 49 1 9.2437 0.5590 -0.9336 50 1 9.5458 -0.3511 1.9227 51 1 10.7999 -0.1133 0.6739 52 1 12.1722 -1.0828 3.2329 53 1 9.9052 3.0774 0.1580 54 1 9.0339 3.4042 1.6874 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033296976.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:33 Heat of formation + Delta-G solvation = -55.374983 kcal Electronic energy + Delta-G solvation = -32241.671536 eV Core-core repulsion = 28214.026700 eV Total energy + Delta-G solvation = -4027.644836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.91687 -40.16980 -39.01200 -37.55581 -35.83461 -35.20066 -33.77584 -32.74949 -31.02268 -30.62694 -29.64772 -27.99890 -27.26588 -26.37024 -25.27311 -23.65198 -22.69791 -22.02842 -21.93611 -21.60032 -19.73794 -18.94172 -18.67745 -17.58171 -17.51366 -16.80303 -16.67649 -16.57513 -16.26060 -15.98463 -15.78161 -15.64217 -15.47971 -15.10325 -14.76174 -14.49466 -14.37102 -14.04227 -13.85898 -13.73117 -13.44530 -13.36590 -13.27977 -13.12828 -12.90752 -12.86384 -12.74456 -12.52781 -12.37389 -12.21447 -12.04118 -11.99478 -11.89037 -11.86706 -11.73379 -11.64542 -11.54246 -11.33414 -10.98308 -10.69583 -10.57770 -9.73701 -9.40775 -8.76696 -7.82184 -5.15144 1.44133 1.46865 1.47503 1.55292 1.84444 2.50695 2.61326 2.83970 3.35704 3.40141 3.61876 3.64811 3.76766 3.85959 3.89399 3.96053 4.00560 4.08400 4.20419 4.22165 4.28028 4.30947 4.40568 4.48879 4.52579 4.62752 4.63954 4.66551 4.69889 4.70537 4.71532 4.80927 4.91683 4.93126 4.97569 4.97785 4.99998 5.03157 5.08165 5.10334 5.24358 5.37868 5.43449 5.46105 5.50017 5.69819 5.77953 5.83982 5.95321 6.04356 6.23267 6.42698 7.09502 7.14589 7.81265 8.44147 9.27476 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.003038 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.659512 B = 9213.453911 C =10163.825821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.104 4.104 4 C 0.054 3.946 5 N -0.530 5.530 6 C 0.018 3.982 7 C 0.055 3.945 8 O -0.385 6.385 9 C 0.081 3.919 10 C 0.040 3.960 11 H 0.084 0.916 12 C 0.519 3.481 13 O -0.560 6.560 14 N -0.589 5.589 15 C 0.101 3.899 16 C 0.126 3.874 17 H 0.130 0.870 18 C -0.142 4.142 19 C 0.182 3.818 20 N -0.617 5.617 21 C -0.232 4.232 22 H 0.077 0.923 23 C -0.060 4.060 24 N -0.945 5.945 25 Si 0.968 3.032 26 H -0.291 1.291 27 H -0.297 1.297 28 H -0.272 1.272 29 C 0.120 3.880 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.111 0.889 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.129 0.871 43 H 0.055 0.945 44 H 0.111 0.889 45 H 0.049 0.951 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.076 0.924 49 H 0.095 0.905 50 H 0.023 0.977 51 H 0.005 0.995 52 H 0.245 0.755 53 H 0.049 0.951 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.956 5.763 -13.006 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.073 4.073 5 N -0.256 5.256 6 C -0.109 4.109 7 C -0.021 4.021 8 O -0.303 6.303 9 C 0.003 3.997 10 C -0.072 4.072 11 H 0.102 0.898 12 C 0.307 3.693 13 O -0.439 6.439 14 N -0.321 5.321 15 C -0.042 4.042 16 C 0.021 3.979 17 H 0.147 0.853 18 C -0.181 4.181 19 C 0.057 3.943 20 N -0.343 5.343 21 C -0.361 4.361 22 H 0.095 0.905 23 C -0.253 4.253 24 N -0.595 5.595 25 Si 0.797 3.203 26 H -0.218 1.218 27 H -0.223 1.223 28 H -0.197 1.197 29 C -0.006 4.006 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.147 0.853 43 H 0.073 0.927 44 H 0.129 0.871 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.114 0.886 50 H 0.041 0.959 51 H 0.023 0.977 52 H 0.054 0.946 53 H 0.067 0.933 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -20.294 5.959 -12.117 24.376 hybrid contribution 1.495 -0.948 0.875 1.974 sum -18.799 5.011 -11.242 22.470 Atomic orbital electron populations 1.21730 0.94609 1.02044 1.02117 1.21478 0.96875 0.96091 1.01724 1.21522 0.92652 0.97344 1.02616 1.22208 0.97168 0.87765 1.00197 1.61962 1.07939 1.16554 1.39136 1.22992 1.02984 0.95040 0.89907 1.22964 0.80146 0.95337 1.03696 1.88019 1.23603 1.75233 1.43433 1.22496 1.00585 0.87809 0.88823 1.22266 0.91090 0.98671 0.95125 0.89826 1.20603 0.80932 0.78492 0.89277 1.90655 1.51956 1.59713 1.41550 1.47797 1.12059 1.51179 1.21021 1.21493 0.99848 0.95313 0.87520 1.22526 0.88543 0.97343 0.89460 0.85257 1.23128 0.98018 0.96810 1.00095 1.21036 0.93633 0.86844 0.92762 1.44636 1.44875 1.03169 1.41668 1.19304 1.13019 0.93390 1.10387 0.90500 1.25459 1.02126 0.95480 1.02231 1.70144 1.44785 0.98976 1.45549 0.85233 0.78615 0.77113 0.79302 1.21818 1.22320 1.19694 1.22135 0.90491 0.92176 0.95792 0.93012 0.91781 0.92266 0.91533 0.93332 0.92398 0.90235 0.94345 0.92655 0.87073 0.93094 0.92329 0.85344 0.92705 0.87119 0.93275 0.91619 0.92094 0.90520 0.88617 0.95850 0.97663 0.94599 0.93307 0.94205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.25 16 2 C -0.12 -2.02 5.93 30.59 0.18 -1.84 16 3 C -0.10 -1.85 5.05 30.59 0.15 -1.69 16 4 C 0.05 1.21 4.62 86.30 0.40 1.61 16 5 N -0.53 -12.06 4.30 -874.37 -3.76 -15.82 16 6 C 0.02 0.28 5.38 86.31 0.46 0.75 16 7 C 0.05 0.86 7.01 72.02 0.50 1.36 16 8 O -0.38 -8.20 10.83 -148.98 -1.61 -9.81 16 9 C 0.08 1.89 6.10 72.02 0.44 2.33 16 10 C 0.04 1.00 1.52 44.18 0.07 1.06 16 11 H 0.08 1.85 6.45 -2.39 -0.02 1.83 16 12 C 0.52 16.59 5.83 87.66 0.51 17.10 16 13 O -0.56 -21.77 14.61 -3.02 -0.04 -21.81 16 14 N -0.59 -19.49 2.91 -814.83 -2.37 -21.86 16 15 C 0.10 3.91 8.86 127.76 1.13 5.05 16 16 C 0.13 3.76 3.05 46.39 0.14 3.90 16 17 H 0.13 2.97 5.12 -2.39 -0.01 2.96 16 18 C -0.14 -4.57 6.09 31.79 0.19 -4.37 16 19 C 0.18 8.26 4.35 86.73 0.38 8.64 16 20 N -0.62 -29.22 2.31 -691.98 -1.60 -30.82 16 21 C -0.23 -12.43 10.28 84.03 0.86 -11.56 16 22 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 23 C -0.06 -3.29 5.49 84.86 0.47 -2.83 16 24 N -0.95 -54.87 10.31 21.65 0.22 -54.65 16 25 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 C 0.12 4.40 6.67 86.85 0.58 4.98 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.10 6.41 -2.39 -0.02 1.08 16 37 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.05 1.62 5.98 -2.39 -0.01 1.60 16 39 H 0.11 1.34 6.25 -2.39 -0.01 1.33 16 40 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.11 2.47 7.33 -2.39 -0.02 2.45 16 45 H 0.05 2.21 7.27 -2.39 -0.02 2.20 16 46 H 0.07 2.53 6.94 -2.39 -0.02 2.51 16 47 H 0.06 2.42 5.65 -2.39 -0.01 2.40 16 48 H 0.08 2.32 8.02 -2.39 -0.02 2.30 16 49 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 50 H 0.02 1.20 5.42 -2.39 -0.01 1.18 16 51 H 0.01 0.27 7.51 -2.39 -0.02 0.25 16 52 H 0.24 14.01 8.31 -92.71 -0.77 13.24 16 53 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 54 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -67.42 400.76 0.92 -66.50 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.87 Total: 17.67 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 7.19 Total: 23.22 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -7.50 Total: -123.14 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.66 Total: -31.62 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -67.42 0.92 -66.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033296976.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.120 kcal (2) G-P(sol) polarization free energy of solvation -67.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds