Wall clock time and date at job start Tue Mar 31 2020 23:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47027 * 2 1 4 4 C 1.53004 * 109.47027 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47099 * 179.97438 * 4 3 2 6 6 C 1.47016 * 110.99398 * 287.84131 * 5 4 3 7 7 C 1.53102 * 109.25643 * 177.61089 * 6 5 4 8 8 O 1.43014 * 109.25879 * 56.84650 * 7 6 5 9 9 C 1.43020 * 113.73606 * 301.33236 * 8 7 6 10 10 C 1.47010 * 111.00120 * 164.20720 * 5 4 3 11 11 H 1.09005 * 109.53999 * 62.43130 * 10 5 4 12 12 C 1.50694 * 109.50713 * 302.32649 * 10 5 4 13 13 O 1.21287 * 120.00175 * 333.84182 * 12 10 5 14 14 N 1.34780 * 120.00224 * 153.84153 * 12 10 5 15 15 C 1.46503 * 119.99847 * 0.02562 * 14 12 10 16 16 C 1.46498 * 119.99973 * 179.97438 * 14 12 10 17 17 H 1.09002 * 110.64301 * 359.30755 * 16 14 12 18 18 C 1.55159 * 110.71586 * 122.44497 * 16 14 12 19 19 C 1.55129 * 101.48687 * 153.73609 * 18 16 14 20 20 N 1.47423 * 104.93782 * 323.22216 * 19 18 16 21 21 C 1.36937 * 125.64560 * 203.96572 * 20 19 18 22 22 H 1.08002 * 119.99935 * 180.02562 * 21 20 19 23 23 C 1.38808 * 119.99942 * 0.04204 * 21 20 19 24 24 N 1.31619 * 120.00458 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99870 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47217 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47249 * 120.00396 * 25 23 21 28 28 H 1.48507 * 109.46774 * 240.00045 * 25 23 21 29 29 C 1.47024 * 108.70719 * 24.00584 * 20 19 18 30 30 H 1.08997 * 109.47189 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47167 * 300.01117 * 1 2 3 32 32 H 1.09001 * 109.46548 * 60.00599 * 1 2 3 33 33 H 1.08993 * 109.47409 * 239.99261 * 2 1 3 34 34 H 1.09000 * 109.46711 * 119.98877 * 2 1 3 35 35 H 1.08999 * 109.48060 * 59.99429 * 3 2 1 36 36 H 1.09001 * 109.46967 * 299.99144 * 3 2 1 37 37 H 1.08993 * 109.47409 * 59.99261 * 4 3 2 38 38 H 1.09001 * 109.46548 * 299.99401 * 4 3 2 39 39 H 1.08998 * 109.51212 * 57.67578 * 6 5 4 40 40 H 1.08994 * 109.54481 * 297.56164 * 6 5 4 41 41 H 1.09009 * 109.50422 * 296.91438 * 7 6 5 42 42 H 1.08991 * 109.54566 * 176.80722 * 7 6 5 43 43 H 1.08997 * 109.51011 * 298.73172 * 9 8 7 44 44 H 1.09005 * 109.53754 * 178.62831 * 9 8 7 45 45 H 1.08999 * 109.47231 * 89.99951 * 15 14 12 46 46 H 1.09003 * 109.46922 * 329.99163 * 15 14 12 47 47 H 1.09002 * 109.46833 * 209.99977 * 15 14 12 48 48 H 1.09003 * 111.00481 * 271.93991 * 18 16 14 49 49 H 1.08995 * 111.00787 * 35.79323 * 18 16 14 50 50 H 1.08998 * 110.42183 * 204.29219 * 19 18 16 51 51 H 1.08998 * 110.30231 * 82.08503 * 19 18 16 52 52 H 0.96993 * 120.00581 * 179.97438 * 24 23 21 53 53 H 1.09002 * 109.87869 * 239.51995 * 29 20 19 54 54 H 1.09001 * 109.88650 * 118.35754 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.8394 3.4635 -1.3070 7 6 4.3083 4.9197 -1.2455 8 8 5.6822 4.9565 -0.8501 9 6 5.9327 4.3461 0.4188 10 6 5.4803 2.8843 0.3741 11 1 6.0732 2.3421 -0.3626 12 6 5.6686 2.2574 1.7315 13 8 4.7506 2.2396 2.5239 14 7 6.8573 1.7166 2.0650 15 6 7.9664 1.7386 1.1081 16 6 7.0405 1.1077 3.3848 17 1 6.1272 1.1868 3.9746 18 6 7.4799 -0.3741 3.2494 19 6 8.2486 -0.5912 4.5793 20 7 8.9451 0.6841 4.8281 21 6 10.0735 0.8421 5.5878 22 1 10.5093 1.8227 5.7098 23 6 10.6572 -0.2581 6.2007 24 7 10.1260 -1.4531 6.0521 25 14 12.1960 -0.0423 7.2376 26 1 12.5901 1.3893 7.2467 27 1 11.9235 -0.4901 8.6269 28 1 13.2981 -0.8550 6.6628 29 6 8.2273 1.7582 4.1263 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 1.6767 1.9565 0.8899 36 1 1.6768 1.9562 -0.8901 37 1 3.9338 0.9284 -0.8890 38 1 3.9329 0.9289 0.8910 39 1 2.7778 3.4331 -1.5523 40 1 4.4050 2.9311 -2.0716 41 1 3.7058 5.4656 -0.5193 42 1 4.1997 5.3795 -2.2276 43 1 5.3775 4.8754 1.1933 44 1 6.9990 4.3906 0.6406 45 1 8.5480 2.6499 1.2469 46 1 7.5708 1.7111 0.0927 47 1 8.6054 0.8710 1.2726 48 1 6.6147 -1.0338 3.1829 49 1 8.1392 -0.5094 2.3920 50 1 8.9687 -1.4026 4.4743 51 1 7.5509 -0.8064 5.3886 52 1 10.5341 -2.2219 6.4801 53 1 8.8917 2.2418 3.4102 54 1 7.8590 2.4896 4.8457 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033296977.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:37 Heat of formation + Delta-G solvation = -59.447682 kcal Electronic energy + Delta-G solvation = -31565.241061 eV Core-core repulsion = 27537.419620 eV Total energy + Delta-G solvation = -4027.821441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.86485 -40.17920 -38.83622 -37.53953 -36.29837 -35.23928 -34.16302 -32.53908 -31.08415 -30.59252 -29.22653 -27.86027 -27.45518 -26.60338 -25.56787 -23.66083 -22.73883 -22.15850 -21.83457 -21.20675 -19.97090 -18.97396 -18.64747 -17.73892 -17.60297 -17.02122 -16.64468 -16.58454 -16.25608 -16.00991 -15.79472 -15.58105 -15.24941 -15.09122 -14.92563 -14.53439 -14.36872 -14.15358 -13.86484 -13.80184 -13.66439 -13.48535 -13.31968 -13.20146 -12.99402 -12.85996 -12.73727 -12.50372 -12.40404 -12.21451 -12.16145 -11.99220 -11.97038 -11.90245 -11.84151 -11.64297 -11.41518 -11.35730 -10.98804 -10.77914 -10.58447 -9.69343 -9.41466 -8.93141 -7.79078 -5.24762 1.43843 1.47450 1.48508 1.58621 1.74767 2.49092 2.60003 2.84175 3.31605 3.38762 3.66059 3.69869 3.77044 3.85885 3.86465 3.93344 3.97206 4.08289 4.18042 4.20402 4.23702 4.28513 4.29676 4.39390 4.50975 4.54085 4.58222 4.63650 4.64254 4.66640 4.70359 4.79795 4.83820 4.90246 4.92166 4.96018 4.98069 5.00738 5.04803 5.07361 5.23938 5.37545 5.43686 5.44470 5.49308 5.55569 5.75327 5.77786 5.94130 6.02482 6.26966 6.36111 7.07514 7.08635 7.73758 8.37290 9.22948 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015194 B = 0.002712 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.381287 B =10321.883504 C =11747.447366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.101 4.101 4 C 0.056 3.944 5 N -0.533 5.533 6 C 0.020 3.980 7 C 0.056 3.944 8 O -0.385 6.385 9 C 0.082 3.918 10 C 0.041 3.959 11 H 0.089 0.911 12 C 0.518 3.482 13 O -0.560 6.560 14 N -0.598 5.598 15 C 0.066 3.934 16 C 0.143 3.857 17 H 0.083 0.917 18 C -0.132 4.132 19 C 0.157 3.843 20 N -0.621 5.621 21 C -0.238 4.238 22 H 0.082 0.918 23 C -0.065 4.065 24 N -0.948 5.948 25 Si 0.982 3.018 26 H -0.267 1.267 27 H -0.295 1.295 28 H -0.288 1.288 29 C 0.132 3.868 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.108 0.892 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.128 0.872 43 H 0.052 0.948 44 H 0.116 0.884 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.082 0.918 51 H -0.016 1.016 52 H 0.248 0.752 53 H 0.045 0.955 54 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.097 8.369 -21.436 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.139 4.139 4 C -0.071 4.071 5 N -0.259 5.259 6 C -0.107 4.107 7 C -0.021 4.021 8 O -0.303 6.303 9 C 0.004 3.996 10 C -0.071 4.071 11 H 0.107 0.893 12 C 0.306 3.694 13 O -0.438 6.438 14 N -0.330 5.330 15 C -0.076 4.076 16 C 0.039 3.961 17 H 0.101 0.899 18 C -0.172 4.172 19 C 0.032 3.968 20 N -0.348 5.348 21 C -0.366 4.366 22 H 0.100 0.900 23 C -0.257 4.257 24 N -0.598 5.598 25 Si 0.810 3.190 26 H -0.191 1.191 27 H -0.222 1.222 28 H -0.215 1.215 29 C 0.005 3.995 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.146 0.854 43 H 0.070 0.930 44 H 0.134 0.866 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.099 0.901 50 H 0.100 0.900 51 H 0.002 0.998 52 H 0.058 0.942 53 H 0.063 0.937 54 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -14.557 8.633 -20.678 26.721 hybrid contribution 1.025 -0.878 0.948 1.649 sum -13.532 7.755 -19.730 25.150 Atomic orbital electron populations 1.21731 0.94785 1.02021 1.02022 1.21478 0.96792 0.96154 1.01720 1.21454 0.93063 0.97075 1.02302 1.22178 0.97090 0.87650 1.00210 1.61941 1.14602 1.19005 1.30372 1.22962 1.03586 0.95696 0.88439 1.22943 0.81639 0.95167 1.02322 1.88013 1.27534 1.78730 1.36067 1.22463 1.02274 0.88449 0.86409 1.22313 0.91818 0.99262 0.93674 0.89321 1.20668 0.81648 0.77750 0.89309 1.90690 1.41690 1.58567 1.52825 1.47897 1.12631 1.57262 1.15210 1.22124 0.89303 1.03798 0.92346 1.21769 0.97790 0.92904 0.83679 0.89914 1.23206 0.99931 0.94764 0.99249 1.21734 0.93579 0.90380 0.91111 1.44696 1.28561 1.03735 1.57791 1.19464 1.00681 0.94350 1.22133 0.90042 1.25634 1.02624 0.95225 1.02266 1.70025 1.42185 0.98808 1.48786 0.84963 0.78735 0.77763 0.77556 1.19126 1.22174 1.21497 1.21582 0.92516 0.91118 0.94236 0.92231 0.93297 0.91712 0.91230 0.93517 0.92999 0.90454 0.93657 0.93001 0.87427 0.92972 0.92463 0.85423 0.92954 0.86593 0.90901 0.88433 0.90596 0.90709 0.90055 0.90047 0.99825 0.94212 0.93725 0.96844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.12 -2.08 5.93 30.59 0.18 -1.89 16 3 C -0.10 -1.86 5.27 30.59 0.16 -1.69 16 4 C 0.06 1.19 4.62 86.30 0.40 1.59 16 5 N -0.53 -11.28 4.23 -874.40 -3.69 -14.97 16 6 C 0.02 0.29 5.46 86.32 0.47 0.76 16 7 C 0.06 0.79 7.01 72.02 0.50 1.29 16 8 O -0.39 -7.31 10.83 -148.98 -1.61 -8.93 16 9 C 0.08 1.67 6.27 72.01 0.45 2.12 16 10 C 0.04 0.90 1.73 44.18 0.08 0.97 16 11 H 0.09 1.62 6.01 -2.38 -0.01 1.61 16 12 C 0.52 15.18 5.66 87.65 0.50 15.68 16 13 O -0.56 -21.10 14.83 -3.05 -0.05 -21.14 16 14 N -0.60 -17.17 2.88 -815.94 -2.35 -19.52 16 15 C 0.07 1.40 8.88 127.77 1.13 2.53 16 16 C 0.14 5.26 3.35 46.18 0.15 5.41 16 17 H 0.08 3.41 6.99 -2.39 -0.02 3.39 16 18 C -0.13 -4.97 6.64 32.06 0.21 -4.76 16 19 C 0.16 7.82 5.89 86.93 0.51 8.33 16 20 N -0.62 -32.09 3.40 -691.56 -2.35 -34.44 16 21 C -0.24 -13.25 10.27 84.03 0.86 -12.39 16 22 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 23 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 24 N -0.95 -56.09 10.09 21.65 0.22 -55.88 16 25 Si 0.98 45.35 29.55 68.60 2.03 47.37 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 28 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 29 C 0.13 5.55 6.88 86.73 0.60 6.15 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.11 6.73 -2.39 -0.02 1.09 16 37 H 0.05 0.82 8.05 -2.39 -0.02 0.80 16 38 H 0.05 1.44 5.91 -2.39 -0.01 1.43 16 39 H 0.11 1.20 6.63 -2.39 -0.02 1.19 16 40 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.12 2.05 7.97 -2.38 -0.02 2.03 16 45 H 0.07 1.40 7.87 -2.39 -0.02 1.38 16 46 H 0.10 1.49 5.83 -2.39 -0.01 1.47 16 47 H 0.08 1.77 6.24 -2.39 -0.01 1.76 16 48 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 49 H 0.08 2.80 6.24 -2.39 -0.01 2.79 16 50 H 0.08 4.53 5.87 -2.39 -0.01 4.51 16 51 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 52 H 0.25 14.21 8.31 -92.71 -0.77 13.43 16 53 H 0.04 1.74 6.83 -2.39 -0.02 1.73 16 54 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -70.49 405.54 0.45 -70.04 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.87 Total: 17.96 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 7.40 Total: 19.51 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -8.18 Total: -124.81 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.66 Total: -30.07 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -70.49 0.45 -70.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033296977.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.592 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds