Wall clock time and date at job start Tue Mar 31 2020 23:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 C 1.52994 * 109.46891 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47008 * 180.02562 * 4 3 2 6 6 C 1.47016 * 111.00145 * 76.68078 * 5 4 3 7 7 C 1.53098 * 109.26092 * 182.39215 * 6 5 4 8 8 O 1.43011 * 109.25802 * 303.15534 * 7 6 5 9 9 C 1.43017 * 113.74178 * 58.66680 * 8 7 6 10 10 C 1.47110 * 110.98691 * 200.33955 * 5 4 3 11 11 H 1.08998 * 109.49239 * 297.52414 * 10 5 4 12 12 C 1.50694 * 109.56852 * 57.68715 * 10 5 4 13 13 O 1.21284 * 119.99743 * 26.69272 * 12 10 5 14 14 N 1.34774 * 119.99976 * 206.69933 * 12 10 5 15 15 C 1.46501 * 120.00314 * 3.58620 * 14 12 10 16 16 C 1.46508 * 119.99600 * 183.58288 * 14 12 10 17 17 H 1.08991 * 110.64450 * 358.31142 * 16 14 12 18 18 C 1.55154 * 110.71895 * 234.97358 * 16 14 12 19 19 C 1.54914 * 101.58561 * 277.14351 * 18 16 14 20 20 N 1.47429 * 104.82793 * 322.99141 * 19 18 16 21 21 C 1.36939 * 125.64686 * 204.09042 * 20 19 18 22 22 H 1.08001 * 119.99993 * 164.51730 * 21 20 19 23 23 C 1.38811 * 120.00142 * 344.51982 * 21 20 19 24 24 N 1.31621 * 119.99975 * 354.76875 * 23 21 20 25 25 Si 1.86797 * 120.00142 * 174.76832 * 23 21 20 26 26 H 1.48500 * 109.47261 * 94.96453 * 25 23 21 27 27 H 1.48501 * 109.46973 * 214.96579 * 25 23 21 28 28 H 1.48497 * 109.47071 * 334.96419 * 25 23 21 29 29 C 1.47026 * 108.70494 * 24.12768 * 20 19 18 30 30 H 1.09001 * 109.47217 * 59.99903 * 1 2 3 31 31 H 1.09002 * 109.47164 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47404 * 300.00222 * 1 2 3 33 33 H 1.08994 * 109.46784 * 240.00399 * 2 1 3 34 34 H 1.08991 * 109.47210 * 120.00267 * 2 1 3 35 35 H 1.09000 * 109.47258 * 59.99688 * 3 2 1 36 36 H 1.09001 * 109.47249 * 300.00077 * 3 2 1 37 37 H 1.08999 * 109.47131 * 60.00613 * 4 3 2 38 38 H 1.09001 * 109.47339 * 300.00147 * 4 3 2 39 39 H 1.09002 * 109.50599 * 62.45596 * 6 5 4 40 40 H 1.09000 * 109.53918 * 302.35125 * 6 5 4 41 41 H 1.08995 * 109.50315 * 183.21761 * 7 6 5 42 42 H 1.08999 * 109.53830 * 63.10910 * 7 6 5 43 43 H 1.08997 * 109.50339 * 61.26628 * 9 8 7 44 44 H 1.09002 * 109.50964 * 181.35088 * 9 8 7 45 45 H 1.08996 * 109.47086 * 92.64463 * 15 14 12 46 46 H 1.09003 * 109.46872 * 212.65330 * 15 14 12 47 47 H 1.09004 * 109.46556 * 332.64659 * 15 14 12 48 48 H 1.09007 * 111.00536 * 35.21658 * 18 16 14 49 49 H 1.09000 * 111.00076 * 159.06735 * 18 16 14 50 50 H 1.08998 * 110.36661 * 204.15291 * 19 18 16 51 51 H 1.08997 * 110.46126 * 81.87192 * 19 18 16 52 52 H 0.96994 * 120.00122 * 179.97438 * 24 23 21 53 53 H 1.08996 * 109.88081 * 239.52392 * 29 20 19 54 54 H 1.09005 * 109.87872 * 118.35725 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0596 2.8275 0.0013 6 6 3.9365 3.4293 1.3370 7 6 4.4009 4.8870 1.2789 8 8 5.7420 4.9355 0.7846 9 6 5.8981 4.3585 -0.5146 10 6 5.4496 2.8952 -0.4755 11 1 6.0941 2.3349 0.2018 12 6 5.5379 2.3047 -1.8592 13 8 4.5672 2.3155 -2.5861 14 7 6.6955 1.7644 -2.2887 15 6 7.8447 1.6801 -1.3840 16 6 6.8046 1.2614 -3.6603 17 1 5.8567 1.3722 -4.1868 18 6 7.2709 -0.2184 -3.6669 19 6 8.8061 -0.0614 -3.5314 20 7 9.1347 1.1352 -4.3275 21 6 10.3532 1.4105 -4.8886 22 1 10.4369 2.1698 -5.6521 23 6 11.4806 0.7136 -4.4762 24 7 11.3988 -0.1376 -3.4757 25 14 13.1140 0.9840 -5.3412 26 1 13.9045 1.9994 -4.6001 27 1 13.8681 -0.2945 -5.3857 28 1 12.8679 1.4619 -6.7255 29 6 7.9379 1.9843 -4.4184 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9564 -0.8900 37 1 3.9336 0.9287 -0.8892 38 1 3.9329 0.9288 0.8908 39 1 4.5569 2.8776 2.0433 40 1 2.8960 3.3913 1.6595 41 1 4.3654 5.3203 2.2784 42 1 3.7473 5.4516 0.6139 43 1 5.2879 4.9071 -1.2321 44 1 6.9453 4.4104 -0.8126 45 1 7.8401 0.7137 -0.8798 46 1 8.7663 1.7871 -1.9562 47 1 7.7828 2.4769 -0.6427 48 1 6.8573 -0.7621 -2.8175 49 1 7.0094 -0.7062 -4.6059 50 1 9.3141 -0.9371 -3.9354 51 1 9.0831 0.0893 -2.4881 52 1 12.1865 -0.6249 -3.1878 53 1 7.6578 2.1194 -5.4630 54 1 8.1342 2.9521 -3.9569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033296978.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:41 Heat of formation + Delta-G solvation = -58.714397 kcal Electronic energy + Delta-G solvation = -31972.826568 eV Core-core repulsion = 27945.036924 eV Total energy + Delta-G solvation = -4027.789644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.89922 -40.27199 -38.86495 -37.51164 -35.99050 -35.23718 -34.11208 -32.50374 -31.00749 -30.57694 -29.64872 -27.69682 -27.45236 -26.44466 -25.54735 -23.65495 -22.85515 -22.09843 -21.84112 -21.18121 -19.92531 -18.90186 -18.56881 -17.79094 -17.58819 -16.97687 -16.74086 -16.54955 -16.28618 -15.99326 -15.74926 -15.58009 -15.29889 -15.12550 -14.76337 -14.58302 -14.34079 -14.04337 -13.78919 -13.71061 -13.58236 -13.35600 -13.29254 -13.27452 -12.93751 -12.88361 -12.77092 -12.49972 -12.43669 -12.20122 -12.09702 -12.00232 -11.90450 -11.86971 -11.86381 -11.62910 -11.58081 -11.35723 -10.96562 -10.65302 -10.55559 -9.69401 -9.43550 -8.79077 -7.87511 -5.23610 1.43046 1.47884 1.48657 1.57624 1.79588 2.50118 2.59367 2.83044 3.33402 3.38933 3.65216 3.69804 3.82511 3.86267 3.87944 3.96487 4.00661 4.10184 4.19231 4.21523 4.26874 4.27503 4.30638 4.39465 4.51709 4.57542 4.61452 4.62614 4.64730 4.66123 4.72160 4.79408 4.87938 4.89975 4.92029 4.96104 4.98802 5.00775 5.07783 5.11290 5.25312 5.38799 5.44993 5.45961 5.51185 5.61790 5.75543 5.78358 5.93795 6.01762 6.21854 6.37487 7.07420 7.10733 7.75696 8.43774 9.24145 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.002930 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.047301 B = 9553.710241 C =10690.223865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.099 4.099 4 C 0.057 3.943 5 N -0.528 5.528 6 C 0.020 3.980 7 C 0.055 3.945 8 O -0.388 6.388 9 C 0.082 3.918 10 C 0.039 3.961 11 H 0.079 0.921 12 C 0.523 3.477 13 O -0.554 6.554 14 N -0.594 5.594 15 C 0.076 3.924 16 C 0.140 3.860 17 H 0.104 0.896 18 C -0.140 4.140 19 C 0.176 3.824 20 N -0.616 5.616 21 C -0.244 4.244 22 H 0.072 0.928 23 C -0.053 4.053 24 N -0.940 5.940 25 Si 0.972 3.028 26 H -0.286 1.286 27 H -0.294 1.294 28 H -0.273 1.273 29 C 0.128 3.872 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.107 0.893 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.025 0.975 51 H 0.030 0.970 52 H 0.249 0.751 53 H 0.034 0.966 54 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.431 4.591 13.125 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.137 4.137 4 C -0.071 4.071 5 N -0.254 5.254 6 C -0.107 4.107 7 C -0.021 4.021 8 O -0.306 6.306 9 C 0.004 3.996 10 C -0.073 4.073 11 H 0.096 0.904 12 C 0.310 3.690 13 O -0.431 6.431 14 N -0.326 5.326 15 C -0.067 4.067 16 C 0.036 3.964 17 H 0.122 0.878 18 C -0.179 4.179 19 C 0.051 3.949 20 N -0.343 5.343 21 C -0.373 4.373 22 H 0.090 0.910 23 C -0.247 4.247 24 N -0.587 5.587 25 Si 0.801 3.199 26 H -0.213 1.213 27 H -0.221 1.221 28 H -0.198 1.198 29 C 0.002 3.998 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.129 0.871 41 H 0.145 0.855 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.105 0.895 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.044 0.956 51 H 0.047 0.953 52 H 0.058 0.942 53 H 0.052 0.948 54 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -18.874 4.896 12.535 23.180 hybrid contribution 1.675 -0.771 -0.355 1.878 sum -17.198 4.124 12.181 21.475 Atomic orbital electron populations 1.21729 0.94753 1.02019 1.02018 1.21477 0.96800 0.96103 1.01725 1.21428 0.92885 0.97065 1.02305 1.22183 0.97224 0.87508 1.00171 1.62004 1.17276 1.20077 1.26054 1.22972 1.03669 0.95961 0.88113 1.22957 0.82551 0.95166 1.01411 1.88018 1.29795 1.80152 1.32658 1.22448 1.02276 0.89053 0.85821 1.22279 0.92313 0.99277 0.93439 0.90379 1.20509 0.81963 0.77514 0.88974 1.90662 1.36618 1.58171 1.57689 1.47863 1.12510 1.59396 1.12849 1.22056 0.88842 1.02171 0.93616 1.21870 0.98566 0.93928 0.82047 0.87822 1.23187 0.97450 0.95029 1.02252 1.21376 0.89790 0.89099 0.94608 1.44659 1.07265 1.20421 1.61942 1.19273 0.84387 1.18748 1.14903 0.90985 1.25590 1.00560 0.99963 0.98589 1.70085 1.28926 1.30539 1.29181 0.85166 0.79874 0.76603 0.78257 1.21315 1.22051 1.19838 1.21710 0.87128 0.93669 0.97320 0.93186 0.92186 0.91859 0.93305 0.91409 0.90695 0.92822 0.92958 0.93791 0.93369 0.87141 0.85487 0.92082 0.92317 0.87520 0.91991 0.91105 0.89537 0.90257 0.90426 0.95645 0.95257 0.94209 0.94778 0.95785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.12 -2.07 5.93 30.60 0.18 -1.89 16 3 C -0.10 -1.86 5.34 30.59 0.16 -1.70 16 4 C 0.06 1.25 4.62 86.30 0.40 1.65 16 5 N -0.53 -11.97 4.20 -874.16 -3.67 -15.64 16 6 C 0.02 0.33 5.47 86.31 0.47 0.80 16 7 C 0.06 0.89 7.01 72.01 0.50 1.40 16 8 O -0.39 -8.61 10.83 -148.98 -1.61 -10.23 16 9 C 0.08 1.95 6.12 72.02 0.44 2.39 16 10 C 0.04 0.97 1.54 44.16 0.07 1.04 16 11 H 0.08 1.83 6.60 -2.39 -0.02 1.82 16 12 C 0.52 16.14 5.56 87.66 0.49 16.63 16 13 O -0.55 -20.30 14.96 -3.04 -0.05 -20.35 16 14 N -0.59 -18.98 2.82 -815.95 -2.30 -21.28 16 15 C 0.08 2.31 8.06 127.77 1.03 3.34 16 16 C 0.14 4.98 3.58 46.18 0.17 5.15 16 17 H 0.10 3.69 6.99 -2.39 -0.02 3.67 16 18 C -0.14 -5.09 6.53 31.99 0.21 -4.88 16 19 C 0.18 8.10 4.49 86.86 0.39 8.49 16 20 N -0.62 -30.33 2.97 -691.96 -2.06 -32.39 16 21 C -0.24 -13.29 10.22 84.03 0.86 -12.43 16 22 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 23 C -0.05 -2.88 5.43 84.86 0.46 -2.42 16 24 N -0.94 -53.60 10.76 21.65 0.23 -53.37 16 25 Si 0.97 44.62 29.56 68.60 2.03 46.64 16 26 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 28 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 29 C 0.13 5.28 6.22 86.73 0.54 5.82 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.14 6.94 -2.39 -0.02 1.12 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.46 5.93 -2.39 -0.01 1.45 16 38 H 0.04 0.87 7.97 -2.39 -0.02 0.85 16 39 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 40 H 0.11 1.36 6.87 -2.39 -0.02 1.35 16 41 H 0.13 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.11 2.47 7.32 -2.39 -0.02 2.45 16 45 H 0.06 1.80 7.88 -2.39 -0.02 1.78 16 46 H 0.07 2.75 5.40 -2.39 -0.01 2.74 16 47 H 0.09 2.16 5.33 -2.39 -0.01 2.15 16 48 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 49 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 50 H 0.03 1.34 7.18 -2.39 -0.02 1.32 16 51 H 0.03 1.41 5.36 -2.39 -0.01 1.40 16 52 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 53 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 54 H 0.02 1.02 8.04 -2.38 -0.02 1.00 16 Total: -1.00 -65.04 403.24 0.52 -64.52 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.86 Total: 20.06 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 7.08 Total: 22.03 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -7.80 Total: -122.68 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -1.66 Total: -30.58 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -65.04 0.52 -64.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033296978.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.810 kcal (2) G-P(sol) polarization free energy of solvation -65.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds