Wall clock time and date at job start Tue Mar 31 2020 23:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46950 * 2 1 4 4 C 1.53007 * 109.46950 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.46740 * 179.97438 * 4 3 2 6 6 C 1.47011 * 111.00109 * 46.36588 * 5 4 3 7 7 C 1.53105 * 109.25695 * 182.38874 * 6 5 4 8 8 O 1.43018 * 109.25722 * 303.15115 * 7 6 5 9 9 C 1.43017 * 113.73779 * 58.66928 * 8 7 6 10 10 C 1.47012 * 110.99762 * 169.99996 * 5 4 3 11 11 H 1.08999 * 109.54360 * 297.56581 * 10 5 4 12 12 C 1.50702 * 109.50962 * 57.67050 * 10 5 4 13 13 O 1.21283 * 119.99478 * 359.78713 * 12 10 5 14 14 N 1.34773 * 120.00430 * 179.78060 * 12 10 5 15 15 C 1.46506 * 119.99969 * 0.02562 * 14 12 10 16 16 C 1.46499 * 120.00036 * 179.72648 * 14 12 10 17 17 H 1.08997 * 110.88578 * 356.39679 * 16 14 12 18 18 C 1.55159 * 111.00421 * 120.28129 * 16 14 12 19 19 C 1.54324 * 102.94259 * 153.57498 * 18 16 14 20 20 N 1.47012 * 107.27077 * 337.80572 * 19 18 16 21 21 C 1.36939 * 125.64596 * 178.98930 * 20 19 18 22 22 H 1.08010 * 119.99888 * 179.97438 * 21 20 19 23 23 C 1.38810 * 120.00126 * 359.97068 * 21 20 19 24 24 N 1.31621 * 120.00159 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00023 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47071 * 60.00130 * 25 23 21 27 27 H 1.48505 * 109.46945 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47115 * 300.00359 * 25 23 21 29 29 C 1.47423 * 108.70588 * 358.94090 * 20 19 18 30 30 H 1.08995 * 109.47051 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47080 * 300.00656 * 1 2 3 32 32 H 1.09001 * 109.46647 * 60.00142 * 1 2 3 33 33 H 1.08998 * 109.47092 * 239.99898 * 2 1 3 34 34 H 1.08993 * 109.46836 * 119.99629 * 2 1 3 35 35 H 1.08998 * 109.47306 * 60.00029 * 3 2 1 36 36 H 1.09007 * 109.46885 * 299.99400 * 3 2 1 37 37 H 1.08998 * 109.47092 * 59.99898 * 4 3 2 38 38 H 1.08993 * 109.46836 * 299.99629 * 4 3 2 39 39 H 1.08994 * 109.50600 * 62.45673 * 6 5 4 40 40 H 1.08998 * 109.50558 * 302.32321 * 6 5 4 41 41 H 1.08999 * 109.50796 * 183.21808 * 7 6 5 42 42 H 1.08997 * 109.53972 * 63.10974 * 7 6 5 43 43 H 1.08995 * 109.50194 * 181.38911 * 9 8 7 44 44 H 1.09003 * 109.50432 * 61.26732 * 9 8 7 45 45 H 1.08999 * 109.46892 * 269.72362 * 15 14 12 46 46 H 1.09000 * 109.46803 * 29.71536 * 15 14 12 47 47 H 1.09000 * 109.47214 * 149.72329 * 15 14 12 48 48 H 1.08996 * 110.71693 * 271.93795 * 18 16 14 49 49 H 1.08994 * 110.71984 * 35.20948 * 18 16 14 50 50 H 1.09001 * 109.87938 * 97.22375 * 19 18 16 51 51 H 1.09002 * 109.87962 * 218.23009 * 19 18 16 52 52 H 0.96998 * 119.99822 * 180.02562 * 24 23 21 53 53 H 1.08998 * 110.36499 * 265.28674 * 29 20 19 54 54 H 1.09002 * 110.36803 * 142.96722 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0597 2.8275 -0.0013 6 6 3.3427 3.6402 0.9921 7 6 3.8413 5.0858 0.9165 8 8 5.2569 5.1078 1.1189 9 6 5.9865 4.3270 0.1684 10 6 5.5097 2.8738 0.2364 11 1 5.7309 2.4639 1.2219 12 6 6.2185 2.0618 -0.8168 13 8 5.5793 1.4964 -1.6786 14 7 7.5626 1.9641 -0.8012 15 6 8.3347 2.6468 0.2400 16 6 8.2512 1.1699 -1.8216 17 1 7.5351 0.6744 -2.4771 18 6 9.2375 2.0470 -2.6372 19 6 10.2933 1.0275 -3.1144 20 7 10.2325 -0.1233 -2.2017 21 6 10.9975 -1.2554 -2.2928 22 1 10.8771 -2.0483 -1.5692 23 6 11.9276 -1.3842 -3.3151 24 7 12.0746 -0.4179 -4.1967 25 14 12.9707 -2.9289 -3.4399 26 1 12.0872 -4.1105 -3.6078 27 1 13.8795 -2.8194 -4.6093 28 1 13.7750 -3.0843 -2.2013 29 6 9.2124 0.1437 -1.1714 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8901 37 1 3.9330 0.9288 -0.8908 38 1 3.9337 0.9286 0.8891 39 1 3.5286 3.2429 1.9899 40 1 2.2736 3.6124 0.7819 41 1 3.3538 5.6798 1.6896 42 1 3.6071 5.5014 -0.0635 43 1 7.0505 4.3723 0.4005 44 1 5.8149 4.7199 -0.8337 45 1 8.5979 3.6482 -0.1005 46 1 7.7363 2.7176 1.1484 47 1 9.2441 2.0827 0.4469 48 1 8.7329 2.5060 -3.4873 49 1 9.6939 2.8063 -2.0023 50 1 10.0659 0.7069 -4.1311 51 1 11.2852 1.4782 -3.0811 52 1 12.7243 -0.5080 -4.9112 53 1 9.6750 0.5686 -0.2807 54 1 8.6768 -0.7722 -0.9215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033296979.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:44 Heat of formation + Delta-G solvation = -52.490326 kcal Electronic energy + Delta-G solvation = -31503.102679 eV Core-core repulsion = 27475.582931 eV Total energy + Delta-G solvation = -4027.519748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.91053 -40.16176 -38.87173 -37.65204 -36.33130 -35.16165 -34.22610 -32.55039 -31.05361 -30.51983 -29.16497 -28.05293 -27.41855 -26.56541 -25.53082 -23.64355 -22.89457 -22.05521 -21.68420 -21.21605 -20.16367 -18.96711 -18.57246 -17.69766 -17.41834 -17.06222 -16.72549 -16.61592 -16.29512 -16.01977 -15.81623 -15.43772 -15.35177 -15.10503 -14.80609 -14.63858 -14.36190 -14.15438 -14.01186 -13.73764 -13.68566 -13.57428 -13.39459 -13.09594 -12.93013 -12.81611 -12.70847 -12.48503 -12.26950 -12.21997 -12.12497 -12.08254 -11.99062 -11.84972 -11.79560 -11.60000 -11.49566 -11.36452 -10.93381 -10.72675 -10.45882 -9.69768 -9.38323 -8.91804 -7.86891 -5.23798 1.44960 1.46580 1.48872 1.55008 1.74849 2.48897 2.62576 2.87329 3.31532 3.41275 3.63478 3.66694 3.83913 3.90649 3.92193 3.94152 3.98521 4.06081 4.15418 4.17977 4.20020 4.28137 4.32977 4.40615 4.52311 4.53988 4.59161 4.63745 4.65549 4.68153 4.74202 4.80086 4.81634 4.90671 4.93738 4.95905 4.97540 4.99703 5.08746 5.18366 5.22162 5.36303 5.41525 5.42815 5.54042 5.60938 5.71612 5.79811 5.97314 6.04642 6.16404 6.37657 7.06781 7.10180 7.73020 8.36673 9.23039 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014386 B = 0.002673 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.825304 B =10472.078399 C =11917.450103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.109 4.109 4 C 0.045 3.955 5 N -0.531 5.531 6 C 0.015 3.985 7 C 0.056 3.944 8 O -0.386 6.386 9 C 0.070 3.930 10 C 0.042 3.958 11 H 0.086 0.914 12 C 0.517 3.483 13 O -0.560 6.560 14 N -0.596 5.596 15 C 0.056 3.944 16 C 0.142 3.858 17 H 0.078 0.922 18 C -0.132 4.132 19 C 0.189 3.811 20 N -0.624 5.624 21 C -0.246 4.246 22 H 0.082 0.918 23 C -0.064 4.064 24 N -0.950 5.950 25 Si 0.980 3.020 26 H -0.279 1.279 27 H -0.293 1.293 28 H -0.274 1.274 29 C 0.131 3.869 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.024 0.976 39 H 0.047 0.953 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.058 0.942 43 H 0.131 0.869 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.088 0.912 50 H 0.008 0.992 51 H 0.017 0.983 52 H 0.248 0.752 53 H 0.047 0.953 54 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.060 11.946 15.099 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.147 4.147 4 C -0.082 4.082 5 N -0.257 5.257 6 C -0.113 4.113 7 C -0.021 4.021 8 O -0.304 6.304 9 C -0.008 4.008 10 C -0.070 4.070 11 H 0.104 0.896 12 C 0.305 3.695 13 O -0.438 6.438 14 N -0.328 5.328 15 C -0.085 4.085 16 C 0.037 3.963 17 H 0.096 0.904 18 C -0.171 4.171 19 C 0.063 3.937 20 N -0.351 5.351 21 C -0.375 4.375 22 H 0.100 0.900 23 C -0.257 4.257 24 N -0.599 5.599 25 Si 0.808 3.192 26 H -0.205 1.205 27 H -0.220 1.220 28 H -0.200 1.200 29 C 0.005 3.995 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.128 0.872 41 H 0.144 0.856 42 H 0.077 0.923 43 H 0.149 0.851 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.116 0.884 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.106 0.894 50 H 0.026 0.974 51 H 0.035 0.965 52 H 0.057 0.943 53 H 0.065 0.935 54 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -20.240 11.889 14.221 27.445 hybrid contribution 0.980 -1.697 -0.194 1.969 sum -19.260 10.192 14.027 25.915 Atomic orbital electron populations 1.21728 0.94431 1.02047 1.02223 1.21480 0.96965 0.96275 1.01581 1.21669 0.92943 0.97397 1.02687 1.22440 0.96501 0.88188 1.01066 1.62037 1.01275 1.12580 1.49800 1.23037 1.00613 0.94138 0.93480 1.22941 0.80588 0.95322 1.03206 1.88015 1.19275 1.69384 1.53713 1.22919 0.98044 0.86033 0.93755 1.22235 0.90094 0.98155 0.96526 0.89643 1.20736 0.81850 0.80914 0.86006 1.90616 1.65573 1.48216 1.39400 1.47777 1.05631 1.49810 1.29600 1.22359 0.97754 0.98134 0.90225 1.21899 0.93066 0.91840 0.89523 0.90382 1.23020 0.96322 0.97870 0.99894 1.20868 0.94868 0.85860 0.92091 1.44639 1.42463 1.17562 1.30440 1.19401 1.13252 0.94798 1.10008 0.89973 1.25674 1.01203 1.01375 0.97469 1.70170 1.38380 1.33824 1.17528 0.85131 0.78180 0.78805 0.77075 1.20528 1.21957 1.19951 1.21893 0.89370 0.96113 0.92142 0.92403 0.91800 0.92673 0.93276 0.92087 0.90283 0.91735 0.90380 0.95797 0.93450 0.87197 0.85578 0.92326 0.85137 0.92703 0.89808 0.88445 0.90091 0.91067 0.89354 0.97386 0.96458 0.94266 0.93531 0.94929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.12 -2.14 5.93 30.60 0.18 -1.96 16 3 C -0.11 -1.93 4.48 30.60 0.14 -1.79 16 4 C 0.05 1.05 4.62 86.31 0.40 1.45 16 5 N -0.53 -11.63 4.51 -874.42 -3.94 -15.57 16 6 C 0.01 0.22 4.94 86.32 0.43 0.64 16 7 C 0.06 0.77 7.01 72.02 0.50 1.28 16 8 O -0.39 -6.89 10.83 -148.98 -1.61 -8.50 16 9 C 0.07 1.28 5.89 72.01 0.42 1.71 16 10 C 0.04 0.91 1.55 44.18 0.07 0.98 16 11 H 0.09 1.67 7.41 -2.39 -0.02 1.65 16 12 C 0.52 15.04 6.81 87.66 0.60 15.63 16 13 O -0.56 -20.96 13.08 -3.04 -0.04 -21.00 16 14 N -0.60 -16.50 2.91 -814.82 -2.37 -18.87 16 15 C 0.06 1.06 7.77 127.77 0.99 2.05 16 16 C 0.14 5.16 3.45 46.38 0.16 5.32 16 17 H 0.08 3.32 7.02 -2.39 -0.02 3.30 16 18 C -0.13 -4.88 6.55 31.78 0.21 -4.67 16 19 C 0.19 9.39 5.37 86.73 0.47 9.86 16 20 N -0.62 -32.37 3.39 -692.00 -2.35 -34.72 16 21 C -0.25 -13.91 10.28 84.03 0.86 -13.05 16 22 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 23 C -0.06 -3.68 5.49 84.86 0.47 -3.21 16 24 N -0.95 -57.59 10.31 21.65 0.22 -57.36 16 25 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 28 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 29 C 0.13 5.36 6.78 86.86 0.59 5.95 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.08 6.28 -2.39 -0.01 1.06 16 36 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.08 2.43 5.48 -2.39 -0.01 2.42 16 38 H 0.02 0.55 8.08 -2.39 -0.02 0.53 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.11 1.32 6.05 -2.39 -0.01 1.30 16 41 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.13 1.88 4.64 -2.39 -0.01 1.87 16 44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 1.25 6.98 -2.39 -0.02 1.23 16 46 H 0.10 1.33 5.95 -2.39 -0.01 1.31 16 47 H 0.08 1.67 5.92 -2.39 -0.01 1.65 16 48 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 49 H 0.09 2.78 7.29 -2.39 -0.02 2.77 16 50 H 0.01 0.45 7.38 -2.39 -0.02 0.43 16 51 H 0.02 0.94 7.50 -2.39 -0.02 0.93 16 52 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 53 H 0.05 1.73 5.92 -2.39 -0.01 1.71 16 54 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.50 398.47 0.01 -72.50 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.87 Total: 16.55 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 7.20 Total: 18.93 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -8.44 Total: -126.53 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -1.65 Total: -29.50 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -72.50 0.01 -72.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033296979.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.005 kcal (2) G-P(sol) polarization free energy of solvation -72.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds