Wall clock time and date at job start Tue Mar 31 2020 23:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47091 * 2 1 4 4 C 1.53005 * 109.47221 * 240.00109 * 2 1 3 5 5 N 1.46894 * 109.47060 * 297.11196 * 4 2 1 6 6 C 1.47846 * 111.00399 * 285.71131 * 5 4 2 7 7 C 1.54899 * 104.79880 * 213.63668 * 6 5 4 8 8 C 1.55139 * 101.65369 * 37.06775 * 7 6 5 9 9 H 1.09003 * 110.85753 * 82.79644 * 8 7 6 10 10 C 1.50700 * 110.70741 * 205.96215 * 8 7 6 11 11 O 1.21289 * 119.99854 * 113.59905 * 10 8 7 12 12 N 1.34773 * 120.00326 * 293.59845 * 10 8 7 13 13 C 1.46502 * 120.00181 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47032 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.51751 * 60.09977 * 14 13 12 16 16 C 1.53290 * 109.51361 * 180.25334 * 14 13 12 17 17 N 1.47155 * 108.38732 * 172.22492 * 16 14 13 18 18 C 1.36938 * 120.98051 * 129.44219 * 17 16 14 19 19 H 1.07998 * 119.99398 * 206.73080 * 18 17 16 20 20 C 1.38810 * 120.00031 * 26.73199 * 18 17 16 21 21 N 1.31613 * 120.00056 * 14.72214 * 20 18 17 22 22 Si 1.86801 * 119.99815 * 194.71956 * 20 18 17 23 23 H 1.48496 * 109.47011 * 89.99999 * 22 20 18 24 24 H 1.48495 * 109.47228 * 210.00200 * 22 20 18 25 25 H 1.48503 * 109.47189 * 329.99952 * 22 20 18 26 26 C 1.47151 * 118.03514 * 309.46427 * 17 16 14 27 27 C 1.53304 * 108.38135 * 50.53509 * 26 17 16 28 28 O 1.42957 * 109.22357 * 307.69226 * 27 26 17 29 29 C 1.47446 * 111.00251 * 164.86505 * 5 4 2 30 30 H 1.09004 * 109.47356 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47295 * 299.99360 * 1 2 3 32 32 H 1.08999 * 109.47619 * 59.99861 * 1 2 3 33 33 H 1.08999 * 109.47619 * 120.00139 * 2 1 3 34 34 H 1.08997 * 109.47237 * 64.00398 * 3 2 1 35 35 H 1.09007 * 109.47219 * 184.00389 * 3 2 1 36 36 H 1.08997 * 109.47283 * 304.00110 * 3 2 1 37 37 H 1.09006 * 109.46785 * 57.10950 * 4 2 1 38 38 H 1.08999 * 109.47051 * 177.10903 * 4 2 1 39 39 H 1.09005 * 110.36955 * 332.46648 * 6 5 4 40 40 H 1.09002 * 110.37518 * 94.80436 * 6 5 4 41 41 H 1.08999 * 110.99477 * 278.97642 * 7 6 5 42 42 H 1.08997 * 111.02357 * 155.16987 * 7 6 5 43 43 H 0.97001 * 119.99749 * 0.02562 * 12 10 8 44 44 H 1.09001 * 109.46884 * 299.99566 * 13 12 10 45 45 H 1.08996 * 109.47136 * 60.00488 * 13 12 10 46 46 H 1.09001 * 109.68369 * 291.94641 * 16 14 13 47 47 H 1.09002 * 109.68438 * 52.50293 * 16 14 13 48 48 H 0.97002 * 120.00192 * 180.02562 * 21 20 18 49 49 H 1.08992 * 109.68270 * 290.81435 * 26 17 16 50 50 H 1.08999 * 109.70977 * 170.27143 * 26 17 16 51 51 H 1.09008 * 109.50822 * 187.77348 * 27 26 17 52 52 H 1.08997 * 109.51035 * 67.62315 * 27 26 17 53 53 H 1.09000 * 109.89270 * 242.66276 * 29 5 4 54 54 H 1.08998 * 109.88673 * 3.69200 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6081 -2.1249 -1.2149 6 6 2.3964 -2.8979 -0.2316 7 6 2.5133 -4.3155 -0.8449 8 6 2.6653 -3.9922 -2.3546 9 1 3.7001 -3.7507 -2.5975 10 6 2.1764 -5.1418 -3.1975 11 8 1.1915 -5.0082 -3.8926 12 7 2.8336 -6.3183 -3.1790 13 6 2.3580 -7.4360 -3.9981 14 6 3.2747 -8.6439 -3.7942 15 1 3.2648 -8.9355 -2.7439 16 6 2.7816 -9.8121 -4.6556 17 7 3.7788 -10.8921 -4.5877 18 6 3.4080 -12.1761 -4.2894 19 1 4.1151 -12.8487 -3.8268 20 6 2.1233 -12.6132 -4.5816 21 7 1.3589 -11.9138 -5.3932 22 14 1.4795 -14.1942 -3.8230 23 1 0.8142 -13.8882 -2.5312 24 1 0.5019 -14.8240 -4.7463 25 1 2.6108 -15.1272 -3.5884 26 6 5.1862 -10.5515 -4.8495 27 6 5.5622 -9.3472 -3.9785 28 8 4.6077 -8.3026 -4.1824 29 6 1.7591 -2.7568 -2.5385 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 1.7364 1.9352 0.9237 35 1 3.1276 1.4433 -0.0718 36 1 1.6192 1.9766 -0.8519 37 1 1.6349 -0.2381 -2.1385 38 1 3.1287 -0.6766 -1.2756 39 1 3.3849 -2.4560 -0.1061 40 1 1.8744 -2.9399 0.7244 41 1 1.6103 -4.8971 -0.6591 42 1 3.3940 -4.8340 -0.4661 43 1 3.6211 -6.4252 -2.6228 44 1 1.3422 -7.6972 -3.7016 45 1 2.3668 -7.1461 -5.0487 46 1 1.8254 -10.1709 -4.2749 47 1 2.6662 -9.4835 -5.6885 48 1 0.4610 -12.2190 -5.5971 49 1 5.3128 -10.2973 -5.9017 50 1 5.8227 -11.3997 -4.5975 51 1 6.5548 -8.9927 -4.2564 52 1 5.5606 -9.6422 -2.9292 53 1 0.7840 -3.0650 -2.9157 54 1 2.2207 -2.0555 -3.2337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035392976.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:38 Heat of formation + Delta-G solvation = -86.682302 kcal Electronic energy + Delta-G solvation = -30196.136827 eV Core-core repulsion = 26167.134404 eV Total energy + Delta-G solvation = -4029.002423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.34569 -40.20220 -39.36701 -36.52788 -36.40077 -35.83984 -33.28187 -32.88387 -31.86593 -30.10030 -29.08123 -27.90341 -27.47487 -26.20082 -25.06756 -23.73197 -22.90771 -22.24234 -21.57909 -20.77098 -20.65655 -18.94244 -18.48115 -17.51022 -17.30896 -17.04602 -16.73870 -16.21464 -16.20059 -16.02575 -15.62842 -15.51256 -15.09039 -15.04730 -14.64094 -14.61775 -14.51108 -14.40677 -14.12466 -13.64867 -13.36190 -13.21087 -13.10616 -12.97933 -12.92211 -12.71153 -12.67678 -12.53712 -12.44597 -12.20553 -12.15969 -12.09376 -11.88723 -11.83411 -11.76153 -11.54488 -11.35926 -11.31687 -10.93554 -10.74877 -10.57258 -10.13830 -9.22762 -8.75961 -7.91721 -5.41146 1.46046 1.47029 1.56202 1.60193 2.09779 2.46914 2.77905 2.99740 3.23333 3.46283 3.49046 3.58623 3.85045 3.98237 4.03508 4.06390 4.12569 4.21273 4.28317 4.33404 4.37023 4.38668 4.45109 4.51185 4.57485 4.60456 4.67458 4.69910 4.75094 4.82526 4.87807 4.88626 4.91905 4.97854 4.99953 5.06733 5.08706 5.12369 5.17731 5.18754 5.22770 5.32146 5.39078 5.49856 5.52985 5.55564 5.58849 6.01179 6.17198 6.25438 6.32150 6.54679 7.04604 7.22969 7.73300 8.26763 9.13653 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.001959 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.502238 B =14289.239195 C =14824.492972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.054 3.946 5 N -0.538 5.538 6 C 0.047 3.953 7 C -0.113 4.113 8 C -0.121 4.121 9 H 0.126 0.874 10 C 0.519 3.481 11 O -0.586 6.586 12 N -0.705 5.705 13 C 0.143 3.857 14 C 0.078 3.922 15 H 0.065 0.935 16 C 0.158 3.842 17 N -0.614 5.614 18 C -0.265 4.265 19 H 0.075 0.925 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.972 3.028 23 H -0.283 1.283 24 H -0.297 1.297 25 H -0.266 1.266 26 C 0.101 3.899 27 C 0.057 3.943 28 O -0.389 6.389 29 C 0.059 3.941 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.416 0.584 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.068 0.932 47 H -0.002 1.002 48 H 0.251 0.749 49 H 0.014 0.986 50 H 0.073 0.927 51 H 0.122 0.878 52 H 0.055 0.945 53 H 0.066 0.934 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.205 23.167 13.797 27.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.074 4.074 5 N -0.262 5.262 6 C -0.081 4.081 7 C -0.151 4.151 8 C -0.143 4.143 9 H 0.144 0.856 10 C 0.306 3.694 11 O -0.466 6.466 12 N -0.357 5.357 13 C 0.018 3.982 14 C 0.018 3.982 15 H 0.083 0.917 16 C 0.031 3.969 17 N -0.338 5.338 18 C -0.395 4.395 19 H 0.093 0.907 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.800 3.200 23 H -0.210 1.210 24 H -0.224 1.224 25 H -0.190 1.190 26 C -0.025 4.025 27 C -0.020 4.020 28 O -0.308 6.308 29 C -0.069 4.069 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.125 0.875 43 H 0.252 0.748 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.016 0.984 48 H 0.060 0.940 49 H 0.032 0.968 50 H 0.091 0.909 51 H 0.139 0.861 52 H 0.074 0.926 53 H 0.085 0.915 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.906 23.369 13.305 27.532 hybrid contribution 0.214 -1.504 -0.419 1.576 sum 6.120 21.865 12.886 26.107 Atomic orbital electron populations 1.21679 0.95171 1.01613 1.00869 1.21057 0.96234 0.95990 0.97381 1.21802 1.01106 0.95182 1.02146 1.22467 0.97980 0.87908 0.99014 1.63563 1.54811 1.02625 1.05169 1.23119 0.96919 0.91733 0.96286 1.22731 1.03654 0.98050 0.90706 1.22509 1.02353 0.92975 0.96473 0.85611 1.20939 0.82599 0.84097 0.81763 1.90691 1.28363 1.83469 1.44082 1.45777 1.31886 1.11411 1.46595 1.21064 0.96588 0.85008 0.95501 1.22737 0.83187 0.93839 0.98390 0.91672 1.21113 0.93858 0.86672 0.95250 1.44333 1.02732 1.04784 1.81992 1.19578 0.97796 0.89376 1.32722 0.90711 1.25882 0.99079 1.01426 0.98352 1.70164 1.09566 1.41712 1.36860 0.85197 0.77994 0.79403 0.77432 1.20970 1.22399 1.19034 1.21843 0.86134 0.97681 0.96815 1.23085 0.92335 0.87719 0.98870 1.87788 1.17192 1.39218 1.86636 1.22629 0.99467 0.93555 0.91227 0.92992 0.92849 0.93596 0.91140 0.92021 0.92261 0.92749 0.91450 0.93671 0.91572 0.89517 0.91690 0.87470 0.74776 0.91024 0.92632 0.91367 0.98415 0.93978 0.96766 0.90889 0.86053 0.92638 0.91544 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.06 71.98 0.65 -1.31 16 2 C -0.09 -1.08 2.96 -10.79 -0.03 -1.11 16 3 C -0.14 -1.40 9.19 71.98 0.66 -0.74 16 4 C 0.05 0.76 4.08 86.31 0.35 1.11 16 5 N -0.54 -9.32 4.49 -885.54 -3.97 -13.29 16 6 C 0.05 0.62 6.00 86.77 0.52 1.14 16 7 C -0.11 -1.67 6.51 31.98 0.21 -1.46 16 8 C -0.12 -2.25 3.34 -10.36 -0.03 -2.29 16 9 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 10 C 0.52 14.38 7.13 87.66 0.63 15.01 16 11 O -0.59 -21.82 15.42 -3.06 -0.05 -21.87 16 12 N -0.71 -18.73 5.45 -463.06 -2.52 -21.25 16 13 C 0.14 4.89 5.37 86.38 0.46 5.36 16 14 C 0.08 2.86 2.87 30.69 0.09 2.95 16 15 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 16 C 0.16 7.61 4.72 86.35 0.41 8.02 16 17 N -0.61 -30.42 3.05 -697.54 -2.13 -32.55 16 18 C -0.27 -14.25 9.66 84.03 0.81 -13.44 16 19 H 0.08 3.85 7.87 -2.91 -0.02 3.82 16 20 C -0.05 -2.87 5.00 84.86 0.42 -2.45 16 21 N -0.94 -55.38 11.04 21.65 0.24 -55.14 16 22 Si 0.97 44.19 29.58 68.60 2.03 46.22 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 26 C 0.10 4.00 6.73 86.36 0.58 4.58 16 27 C 0.06 1.77 6.98 72.08 0.50 2.27 16 28 O -0.39 -13.26 10.13 -148.98 -1.51 -14.77 16 29 C 0.06 1.24 6.27 86.65 0.54 1.78 16 30 H 0.05 0.92 7.69 -2.38 -0.02 0.90 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.85 7.61 -2.39 -0.02 0.83 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.07 1.02 7.88 -2.38 -0.02 1.00 16 38 H 0.05 0.55 7.70 -2.39 -0.02 0.53 16 39 H 0.07 0.68 7.54 -2.38 -0.02 0.66 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.22 8.04 -2.39 -0.02 1.20 16 42 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.42 8.70 8.35 -92.71 -0.77 7.92 16 44 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.07 3.69 6.10 -2.39 -0.01 3.68 16 47 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 48 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 49 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 51 H 0.12 2.84 8.14 -2.38 -0.02 2.82 16 52 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 53 H 0.07 1.85 6.80 -2.39 -0.02 1.84 16 54 H 0.06 1.21 7.47 -2.39 -0.02 1.19 16 Total: -1.00 -69.40 417.79 -1.05 -70.46 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.08 Total: 22.77 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 6.78 Total: 19.42 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -8.38 Total: -122.23 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -1.56 Total: -36.64 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.40 -1.05 -70.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035392976.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.226 kcal (2) G-P(sol) polarization free energy of solvation -69.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds