Wall clock time and date at job start Tue Mar 31 2020 23:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46631 * 2 1 4 4 C 1.52997 * 109.47270 * 120.00404 * 2 1 3 5 5 N 1.46904 * 109.46866 * 175.00607 * 4 2 1 6 6 C 1.48562 * 110.99748 * 290.12334 * 5 4 2 7 7 C 1.54375 * 104.59280 * 200.96434 * 6 5 4 8 8 C 1.54263 * 105.06332 * 23.85220 * 7 6 5 9 9 H 1.09005 * 110.32048 * 241.00559 * 8 7 6 10 10 C 1.50694 * 110.32508 * 118.89818 * 8 7 6 11 11 O 1.21286 * 120.00035 * 241.45162 * 10 8 7 12 12 N 1.34775 * 120.00149 * 61.45375 * 10 8 7 13 13 C 1.46505 * 120.00327 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47480 * 179.72367 * 13 12 10 15 15 H 1.09002 * 109.51160 * 60.09833 * 14 13 12 16 16 C 1.53296 * 109.51087 * 180.24903 * 14 13 12 17 17 N 1.47152 * 108.38247 * 172.22597 * 16 14 13 18 18 C 1.36937 * 120.98620 * 129.48796 * 17 16 14 19 19 H 1.07998 * 120.00165 * 206.21880 * 18 17 16 20 20 C 1.38814 * 119.99529 * 26.21264 * 18 17 16 21 21 N 1.31623 * 119.99755 * 16.92424 * 20 18 17 22 22 Si 1.86798 * 120.00120 * 196.91991 * 20 18 17 23 23 H 1.48497 * 109.47046 * 59.99831 * 22 20 18 24 24 H 1.48497 * 109.47241 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46703 * 300.00146 * 22 20 18 26 26 C 1.47160 * 118.03396 * 309.46936 * 17 16 14 27 27 C 1.53290 * 108.38766 * 50.53355 * 26 17 16 28 28 O 1.42958 * 109.50975 * 300.00040 * 14 13 12 29 29 C 1.48561 * 110.99875 * 174.70566 * 5 4 2 30 30 H 1.08995 * 109.47424 * 299.99245 * 1 2 3 31 31 H 1.08992 * 109.47508 * 59.99987 * 1 2 3 32 32 H 1.09005 * 109.46985 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47116 * 240.00668 * 2 1 3 34 34 H 1.09002 * 109.46752 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47373 * 300.00339 * 3 2 1 36 36 H 1.09003 * 109.46824 * 60.00490 * 3 2 1 37 37 H 1.08997 * 109.47421 * 55.00557 * 4 2 1 38 38 H 1.09003 * 109.46723 * 294.99642 * 4 2 1 39 39 H 1.08998 * 110.41300 * 82.17833 * 6 5 4 40 40 H 1.09002 * 110.50805 * 319.78754 * 6 5 4 41 41 H 1.09004 * 110.32334 * 264.95218 * 7 6 5 42 42 H 1.09004 * 110.32445 * 142.74769 * 7 6 5 43 43 H 0.97006 * 119.99998 * 359.71891 * 12 10 8 44 44 H 1.09002 * 109.46533 * 299.72360 * 13 12 10 45 45 H 1.08999 * 109.47112 * 59.71864 * 13 12 10 46 46 H 1.08995 * 109.68216 * 291.94786 * 16 14 13 47 47 H 1.08995 * 109.67716 * 52.50744 * 16 14 13 48 48 H 0.97002 * 119.99491 * 179.97438 * 21 20 18 49 49 H 1.09005 * 109.68068 * 290.80767 * 26 17 16 50 50 H 1.08998 * 109.71010 * 170.27770 * 26 17 16 51 51 H 1.09000 * 109.51260 * 187.77533 * 27 26 17 52 52 H 1.09004 * 109.55551 * 67.64452 * 27 26 17 53 53 H 1.09005 * 110.41134 * 40.25902 * 29 5 4 54 54 H 1.09003 * 110.41076 * 277.81732 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5041 -0.8266 1.1903 6 6 3.9272 -1.7806 0.1329 7 6 5.3602 -2.1931 0.5321 8 6 5.4390 -1.9481 2.0531 9 1 6.2099 -1.2110 2.2783 10 6 5.7227 -3.2388 2.7772 11 8 4.9231 -3.6724 3.5795 12 7 6.8648 -3.9114 2.5333 13 6 7.1404 -5.1666 3.2369 14 6 8.4881 -5.7248 2.7754 15 1 9.2758 -5.0050 2.9982 16 6 8.7743 -7.0414 3.5065 17 7 9.9757 -7.6499 2.9133 18 6 11.0144 -8.0709 3.7000 19 1 12.0151 -8.1133 3.2960 20 6 10.7812 -8.4431 5.0168 21 7 9.5569 -8.7138 5.4172 22 14 12.2047 -8.5597 6.2207 23 1 12.8669 -7.2354 6.3340 24 1 11.6944 -8.9741 7.5522 25 1 13.1848 -9.5630 5.7325 26 6 10.0276 -7.7931 1.4496 27 6 9.6802 -6.4399 0.8188 28 8 8.4474 -5.9674 1.3672 29 6 4.0469 -1.4080 2.4450 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 3.1299 1.4426 0.0005 35 1 1.6765 1.9564 -0.8899 36 1 1.6765 1.9563 0.8901 37 1 1.6055 -1.7199 1.2950 38 1 1.7517 -0.1583 2.1369 39 1 3.9296 -1.2917 -0.8413 40 1 3.2710 -2.6509 0.1191 41 1 6.0912 -1.5751 0.0106 42 1 5.5267 -3.2471 0.3093 43 1 7.5025 -3.5667 1.8887 44 1 7.1721 -4.9817 4.3106 45 1 6.3534 -5.8875 3.0155 46 1 8.9472 -6.8438 4.5644 47 1 7.9263 -7.7165 3.3923 48 1 9.3940 -8.9742 6.3373 49 1 9.3057 -8.5440 1.1284 50 1 11.0300 -8.0937 1.1450 51 1 9.5778 -6.5567 -0.2601 52 1 10.4727 -5.7229 1.0338 53 1 3.4090 -2.2197 2.7949 54 1 4.1396 -0.6387 3.2116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035392977.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:42 Heat of formation + Delta-G solvation = -86.934425 kcal Electronic energy + Delta-G solvation = -30306.190295 eV Core-core repulsion = 26277.176939 eV Total energy + Delta-G solvation = -4029.013356 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.38777 -40.19558 -39.32123 -36.54095 -36.42510 -35.85295 -33.29048 -32.94652 -31.89788 -30.03878 -29.08582 -27.90866 -27.49344 -26.21068 -25.07173 -23.68168 -22.88054 -22.39744 -21.59331 -20.98635 -20.34589 -18.94105 -18.30575 -17.56156 -17.24817 -17.16464 -16.86025 -16.49372 -16.11666 -15.77725 -15.64710 -15.52093 -15.25115 -15.02804 -14.78047 -14.62292 -14.57529 -14.28375 -14.11240 -13.72878 -13.43380 -13.20007 -13.10147 -13.00531 -12.78740 -12.65574 -12.56107 -12.52978 -12.43228 -12.29375 -12.20781 -12.12953 -11.88347 -11.84513 -11.75621 -11.58294 -11.37747 -11.31825 -10.91387 -10.74479 -10.55575 -10.14824 -9.49478 -8.76884 -7.92629 -5.40143 1.45833 1.48022 1.55190 1.58792 2.06978 2.47002 2.77486 3.02432 3.22558 3.45249 3.49019 3.62885 3.84704 3.97527 4.02859 4.05718 4.09147 4.22787 4.27759 4.30782 4.35605 4.44894 4.49342 4.50823 4.59461 4.59690 4.67509 4.68579 4.75539 4.81017 4.81632 4.85287 4.88114 4.96502 4.98012 5.06307 5.07523 5.08945 5.12889 5.18235 5.21911 5.29553 5.36938 5.46700 5.51103 5.55325 5.58610 5.81634 6.02094 6.25103 6.31425 6.53584 7.03971 7.21213 7.73220 8.26707 9.13033 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.001965 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.455081 B =14245.034204 C =14815.051984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.133 4.133 4 C 0.048 3.952 5 N -0.503 5.503 6 C 0.031 3.969 7 C -0.110 4.110 8 C -0.104 4.104 9 H 0.132 0.868 10 C 0.514 3.486 11 O -0.589 6.589 12 N -0.705 5.705 13 C 0.143 3.857 14 C 0.078 3.922 15 H 0.066 0.934 16 C 0.159 3.841 17 N -0.613 5.613 18 C -0.267 4.267 19 H 0.075 0.925 20 C -0.052 4.052 21 N -0.936 5.936 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.296 1.296 25 H -0.274 1.274 26 C 0.101 3.899 27 C 0.058 3.942 28 O -0.388 6.388 29 C 0.047 3.953 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.032 0.968 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.416 0.584 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.066 0.934 47 H -0.002 1.002 48 H 0.251 0.749 49 H 0.014 0.986 50 H 0.073 0.927 51 H 0.122 0.878 52 H 0.055 0.945 53 H 0.038 0.962 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.948 20.465 -14.023 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.191 4.191 4 C -0.081 4.081 5 N -0.226 5.226 6 C -0.097 4.097 7 C -0.149 4.149 8 C -0.125 4.125 9 H 0.150 0.850 10 C 0.302 3.698 11 O -0.469 6.469 12 N -0.357 5.357 13 C 0.018 3.982 14 C 0.018 3.982 15 H 0.084 0.916 16 C 0.032 3.968 17 N -0.338 5.338 18 C -0.397 4.397 19 H 0.093 0.907 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.799 3.201 23 H -0.200 1.200 24 H -0.223 1.223 25 H -0.200 1.200 26 C -0.025 4.025 27 C -0.020 4.020 28 O -0.307 6.307 29 C -0.081 4.081 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.050 0.950 41 H 0.126 0.874 42 H 0.087 0.913 43 H 0.253 0.747 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.016 0.984 48 H 0.060 0.940 49 H 0.032 0.968 50 H 0.091 0.909 51 H 0.140 0.860 52 H 0.074 0.926 53 H 0.056 0.944 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.501 20.651 -13.518 27.230 hybrid contribution 0.595 -1.729 1.269 2.226 sum -10.906 18.921 -12.248 25.040 Atomic orbital electron populations 1.21816 0.94522 1.01681 1.02397 1.21065 0.95651 0.97152 0.96824 1.21677 1.01616 0.94603 1.01177 1.22394 0.87186 0.98843 0.99660 1.65465 1.10685 1.43481 1.03019 1.23183 0.95220 0.94126 0.97132 1.22353 0.98093 1.02461 0.91952 1.22033 1.00274 0.93557 0.96686 0.84992 1.21141 0.80406 0.86468 0.81800 1.90686 1.48062 1.70489 1.37707 1.45783 1.21927 1.23510 1.44442 1.21069 0.95247 0.85484 0.96366 1.22728 0.95896 0.97029 0.82503 0.91621 1.21089 0.87801 0.90458 0.97464 1.44337 1.17989 1.69832 1.01633 1.19531 0.88233 1.38079 0.93819 0.90739 1.25860 0.98772 0.99282 1.00784 1.70183 1.21178 1.49939 1.16902 0.85288 0.78838 0.78289 0.77725 1.20042 1.22266 1.19969 1.21842 0.99970 0.96447 0.84202 1.23080 0.85946 0.94417 0.98536 1.87786 1.35407 1.86338 1.21214 1.22937 0.93605 0.98089 0.93496 0.92478 0.91622 0.93122 0.91305 0.92195 0.92639 0.93242 0.95646 0.90745 0.88144 0.94974 0.87365 0.91300 0.74681 0.90892 0.92762 0.91554 0.98431 0.93970 0.96812 0.90906 0.86028 0.92630 0.94412 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.19 71.98 0.66 -1.00 16 2 C -0.09 -1.15 2.92 -10.79 -0.03 -1.18 16 3 C -0.13 -1.64 9.08 71.98 0.65 -0.99 16 4 C 0.05 0.78 4.20 86.30 0.36 1.14 16 5 N -0.50 -8.70 4.82 -881.49 -4.25 -12.95 16 6 C 0.03 0.50 5.73 86.45 0.50 0.99 16 7 C -0.11 -1.68 6.56 31.49 0.21 -1.47 16 8 C -0.10 -1.96 3.45 -10.65 -0.04 -2.00 16 9 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 10 C 0.51 14.16 6.96 87.66 0.61 14.77 16 11 O -0.59 -21.71 15.46 -3.05 -0.05 -21.75 16 12 N -0.71 -18.64 5.32 -463.06 -2.46 -21.11 16 13 C 0.14 4.86 5.37 86.38 0.46 5.32 16 14 C 0.08 2.85 2.87 30.69 0.09 2.94 16 15 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 16 C 0.16 7.63 4.73 86.35 0.41 8.03 16 17 N -0.61 -30.37 3.05 -697.54 -2.13 -32.49 16 18 C -0.27 -14.36 9.65 84.03 0.81 -13.55 16 19 H 0.07 3.83 7.88 -2.91 -0.02 3.81 16 20 C -0.05 -2.84 4.95 84.86 0.42 -2.42 16 21 N -0.94 -55.30 11.14 21.65 0.24 -55.06 16 22 Si 0.97 44.10 29.59 68.60 2.03 46.13 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 26 C 0.10 4.00 6.73 86.35 0.58 4.58 16 27 C 0.06 1.77 6.98 72.08 0.50 2.28 16 28 O -0.39 -13.16 10.13 -148.98 -1.51 -14.67 16 29 C 0.05 0.98 5.81 86.45 0.50 1.48 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.07 0.91 7.05 -2.39 -0.02 0.89 16 34 H 0.06 0.84 7.75 -2.39 -0.02 0.82 16 35 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.03 0.48 7.88 -2.39 -0.02 0.46 16 38 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 39 H 0.10 1.28 7.64 -2.39 -0.02 1.26 16 40 H 0.03 0.60 7.83 -2.39 -0.02 0.58 16 41 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.20 7.65 -2.38 -0.02 1.19 16 43 H 0.42 8.75 8.32 -92.70 -0.77 7.98 16 44 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 45 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.07 3.57 6.14 -2.39 -0.01 3.55 16 47 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 48 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 49 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 50 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 51 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 52 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 53 H 0.04 1.01 6.79 -2.38 -0.02 0.99 16 54 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -68.67 417.48 -1.34 -70.02 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.09 Total: 22.96 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 6.70 Total: 18.92 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -8.60 Total: -121.62 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -1.56 Total: -36.42 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -68.67 -1.34 -70.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035392977.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.918 kcal (2) G-P(sol) polarization free energy of solvation -68.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds