Wall clock time and date at job start Tue Mar 31 2020 23:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46988 * 2 1 4 4 C 1.52999 * 109.47068 * 119.99995 * 2 1 3 5 5 N 1.46900 * 109.47227 * 62.64527 * 4 2 1 6 6 C 1.47894 * 111.00053 * 75.60345 * 5 4 2 7 7 C 1.53989 * 107.06133 * 145.84609 * 6 5 4 8 8 C 1.54602 * 105.13880 * 358.77280 * 7 6 5 9 9 H 1.09006 * 110.72227 * 96.57928 * 8 7 6 10 10 C 1.50700 * 110.72280 * 219.68427 * 8 7 6 11 11 O 1.21279 * 119.99605 * 118.54893 * 10 8 7 12 12 N 1.34765 * 120.00076 * 298.54332 * 10 8 7 13 13 C 1.46505 * 119.99869 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.47209 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.51296 * 304.90277 * 14 13 12 16 16 C 1.52874 * 109.58262 * 184.88409 * 14 13 12 17 17 N 1.47145 * 108.61016 * 187.92625 * 16 14 13 18 18 C 1.36941 * 120.98593 * 230.50318 * 17 16 14 19 19 H 1.08000 * 120.00571 * 150.28933 * 18 17 16 20 20 C 1.38816 * 119.99429 * 330.29296 * 18 17 16 21 21 N 1.31616 * 120.00236 * 334.83888 * 20 18 17 22 22 Si 1.86801 * 119.99572 * 154.83781 * 20 18 17 23 23 H 1.48496 * 109.47493 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47134 * 239.99467 * 22 20 18 25 25 H 1.48504 * 109.46949 * 120.00324 * 22 20 18 26 26 C 1.47159 * 118.03540 * 50.22021 * 17 16 14 27 27 C 1.53286 * 108.38646 * 309.72103 * 26 17 16 28 28 O 1.42965 * 109.50861 * 65.00058 * 14 13 12 29 29 C 1.48537 * 110.99870 * 193.00109 * 5 4 2 30 30 H 1.08996 * 109.47571 * 300.00180 * 1 2 3 31 31 H 1.09007 * 109.47303 * 60.00005 * 1 2 3 32 32 H 1.09004 * 109.47294 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47163 * 240.00165 * 2 1 3 34 34 H 1.08995 * 109.47087 * 64.49678 * 3 2 1 35 35 H 1.08999 * 109.46564 * 184.49396 * 3 2 1 36 36 H 1.08998 * 109.46889 * 304.49490 * 3 2 1 37 37 H 1.09008 * 109.46788 * 302.64641 * 4 2 1 38 38 H 1.08995 * 109.47185 * 182.64642 * 4 2 1 39 39 H 1.08997 * 109.91794 * 26.48982 * 6 5 4 40 40 H 1.09005 * 110.08296 * 265.28727 * 6 5 4 41 41 H 1.08998 * 110.30833 * 239.85888 * 7 6 5 42 42 H 1.08996 * 110.31339 * 117.68825 * 7 6 5 43 43 H 0.97000 * 120.00599 * 0.02562 * 12 10 8 44 44 H 1.08999 * 109.46639 * 60.00454 * 13 12 10 45 45 H 1.08992 * 109.47327 * 300.00223 * 13 12 10 46 46 H 1.09004 * 109.62097 * 68.10149 * 16 14 13 47 47 H 1.09001 * 109.52285 * 307.68870 * 16 14 13 48 48 H 0.96996 * 119.99915 * 354.15608 * 21 20 18 49 49 H 1.08998 * 109.67767 * 69.44990 * 26 17 16 50 50 H 1.09000 * 109.68250 * 189.99358 * 26 17 16 51 51 H 1.09000 * 109.51212 * 172.22372 * 27 26 17 52 52 H 1.09000 * 109.51887 * 292.37690 * 27 26 17 53 53 H 1.08998 * 110.66974 * 81.84810 * 29 5 4 54 54 H 1.08990 * 110.66560 * 318.70957 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6032 -2.1235 1.2177 6 6 2.4080 -2.9078 0.2563 7 6 2.5507 -4.3264 0.8381 8 6 1.8079 -4.2836 2.1933 9 1 0.7907 -4.6609 2.0877 10 6 2.5595 -5.0672 3.2383 11 8 2.9779 -4.5090 4.2304 12 7 2.7665 -6.3883 3.0705 13 6 3.4977 -7.1499 4.0862 14 6 3.5931 -8.6148 3.6548 15 1 2.5934 -9.0026 3.4593 16 6 4.2477 -9.4348 4.7666 17 7 4.5028 -10.7928 4.2605 18 6 4.1009 -11.8953 4.9664 19 1 3.8429 -12.8055 4.4455 20 6 4.0250 -11.8428 6.3515 21 7 4.7665 -10.9845 7.0191 22 14 2.8704 -12.9904 7.2677 23 1 2.1528 -13.8517 6.2939 24 1 1.8859 -12.1898 8.0391 25 1 3.6542 -13.8415 8.1985 26 6 5.1970 -10.9310 2.9703 27 6 4.4914 -10.0381 1.9435 28 8 4.3837 -8.7123 2.4676 29 6 1.8034 -2.7731 2.5384 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.7439 1.9326 0.9275 35 1 3.1270 1.4435 -0.0805 36 1 1.6123 1.9790 -0.8470 37 1 1.6383 -0.2355 2.1386 38 1 3.1289 -0.6803 1.2733 39 1 3.3920 -2.4540 0.1387 40 1 1.9016 -2.9512 -0.7080 41 1 3.6024 -4.5688 0.9906 42 1 2.0859 -5.0559 0.1748 43 1 2.4322 -6.8347 2.2770 44 1 2.9709 -7.0848 5.0383 45 1 4.5008 -6.7381 4.1971 46 1 3.5804 -9.4830 5.6272 47 1 5.1891 -8.9685 5.0571 48 1 5.4266 -10.4483 6.5528 49 1 6.2356 -10.6180 3.0770 50 1 5.1580 -11.9697 2.6420 51 1 5.0696 -10.0185 1.0197 52 1 3.4951 -10.4318 1.7420 53 1 0.9810 -2.5351 3.2129 54 1 2.7575 -2.4751 2.9730 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035392978.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:46 Heat of formation + Delta-G solvation = -92.088458 kcal Electronic energy + Delta-G solvation = -30244.523407 eV Core-core repulsion = 26215.286556 eV Total energy + Delta-G solvation = -4029.236852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.38740 -40.35657 -39.40748 -36.74971 -36.50095 -35.97121 -33.29886 -32.98930 -31.98061 -30.09214 -28.97198 -27.90771 -27.56554 -26.24690 -24.97816 -23.86071 -22.97226 -22.27543 -21.69909 -21.04446 -20.38848 -19.53146 -18.39114 -17.69973 -17.24640 -17.19902 -16.76859 -16.53666 -16.05931 -15.89297 -15.69371 -15.52262 -15.39538 -15.18570 -14.98496 -14.62089 -14.54170 -14.24390 -14.22463 -13.76848 -13.59479 -13.47967 -13.15135 -13.06112 -12.81556 -12.65937 -12.59366 -12.51065 -12.46684 -12.25648 -12.15657 -11.93040 -11.85308 -11.82335 -11.70124 -11.60887 -11.39179 -11.30207 -11.02079 -10.84616 -10.48414 -10.21032 -9.43873 -9.01224 -8.31233 -5.52427 1.54660 1.57232 1.64209 1.80653 2.01457 2.57328 2.67134 2.97074 3.13102 3.35921 3.43545 3.56094 3.80755 3.89891 3.92728 3.96970 4.08119 4.11566 4.22003 4.27559 4.32358 4.33765 4.36178 4.42674 4.47402 4.53427 4.56964 4.65563 4.68946 4.74317 4.77959 4.79323 4.84995 4.87808 4.91100 4.93995 4.95692 5.04215 5.08506 5.13134 5.14224 5.19192 5.29463 5.30592 5.47389 5.56007 5.77146 5.84954 6.03576 6.15053 6.28666 6.48074 6.91778 7.16322 7.64922 8.10619 8.91242 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024506 B = 0.001946 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.290225 B =14383.006447 C =14945.434242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 C -0.146 4.146 4 C 0.050 3.950 5 N -0.513 5.513 6 C 0.037 3.963 7 C -0.116 4.116 8 C -0.103 4.103 9 H 0.132 0.868 10 C 0.518 3.482 11 O -0.587 6.587 12 N -0.706 5.706 13 C 0.142 3.858 14 C 0.083 3.917 15 H 0.069 0.931 16 C 0.138 3.862 17 N -0.619 5.619 18 C -0.360 4.360 19 H 0.057 0.943 20 C -0.073 4.073 21 N -0.939 5.939 22 Si 1.119 2.881 23 H -0.269 1.269 24 H -0.286 1.286 25 H -0.292 1.292 26 C 0.102 3.898 27 C 0.058 3.942 28 O -0.385 6.385 29 C 0.057 3.943 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.031 0.969 39 H 0.043 0.957 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.416 0.584 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.005 0.995 48 H 0.253 0.747 49 H 0.015 0.985 50 H 0.069 0.931 51 H 0.124 0.876 52 H 0.056 0.944 53 H 0.085 0.915 54 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.908 18.821 -19.094 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.204 4.204 4 C -0.079 4.079 5 N -0.236 5.236 6 C -0.090 4.090 7 C -0.155 4.155 8 C -0.125 4.125 9 H 0.150 0.850 10 C 0.305 3.695 11 O -0.467 6.467 12 N -0.358 5.358 13 C 0.017 3.983 14 C 0.024 3.976 15 H 0.087 0.913 16 C 0.011 3.989 17 N -0.345 5.345 18 C -0.489 4.489 19 H 0.074 0.926 20 C -0.270 4.270 21 N -0.579 5.579 22 Si 0.943 3.057 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.219 1.219 26 C -0.023 4.023 27 C -0.019 4.019 28 O -0.304 6.304 29 C -0.071 4.071 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.125 0.875 43 H 0.253 0.747 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.023 0.977 48 H 0.062 0.938 49 H 0.033 0.967 50 H 0.087 0.913 51 H 0.141 0.859 52 H 0.074 0.926 53 H 0.104 0.896 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.656 18.950 -17.157 27.326 hybrid contribution 1.957 -0.243 -0.779 2.120 sum -7.699 18.706 -17.936 27.035 Atomic orbital electron populations 1.21673 0.94354 1.02089 1.01007 1.21038 0.96848 0.95703 0.96910 1.21818 1.00869 0.95472 1.02267 1.22411 0.97406 0.88574 0.99475 1.64790 1.52014 1.02130 1.04689 1.22944 0.96314 0.92330 0.97444 1.22429 1.00296 0.98574 0.94168 1.22193 1.01453 0.95132 0.93693 0.84973 1.21048 0.79184 0.81992 0.87237 1.90698 1.53055 1.70396 1.32593 1.45788 1.56856 1.08538 1.24590 1.21073 0.96861 0.88711 0.91688 1.22516 0.94550 0.93973 0.86583 0.91285 1.21200 0.96890 0.85276 0.95515 1.44356 1.66780 1.01394 1.21953 1.20251 1.43787 0.93734 0.91155 0.92560 1.27328 1.01553 1.02912 0.95182 1.70864 1.20948 1.27852 1.38285 0.82820 0.74281 0.73913 0.74671 1.19387 1.21262 1.21857 1.21844 0.94133 0.99523 0.86827 1.23071 1.00581 0.82013 0.96236 1.87819 1.72447 1.28895 1.41286 1.22936 1.00742 0.91434 0.91970 0.93462 0.92739 0.92223 0.91239 0.92675 0.92861 0.91685 0.91126 0.95042 0.93866 0.88430 0.91993 0.87535 0.74704 0.90765 0.92377 0.92733 0.97695 0.93757 0.96711 0.91268 0.85859 0.92605 0.89614 0.94617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.06 71.98 0.65 -1.00 16 2 C -0.09 -1.06 2.97 -10.79 -0.03 -1.09 16 3 C -0.15 -1.54 9.19 71.98 0.66 -0.88 16 4 C 0.05 0.76 4.23 86.30 0.37 1.13 16 5 N -0.51 -8.39 4.58 -883.05 -4.04 -12.43 16 6 C 0.04 0.53 6.04 86.45 0.52 1.05 16 7 C -0.12 -1.69 6.45 31.47 0.20 -1.49 16 8 C -0.10 -1.90 3.45 -10.33 -0.04 -1.93 16 9 H 0.13 1.91 8.14 -2.38 -0.02 1.90 16 10 C 0.52 13.88 7.03 87.66 0.62 14.49 16 11 O -0.59 -21.16 15.78 -3.03 -0.05 -21.21 16 12 N -0.71 -18.06 5.45 -463.07 -2.52 -20.58 16 13 C 0.14 4.64 5.34 86.38 0.46 5.10 16 14 C 0.08 2.97 2.80 30.55 0.09 3.06 16 15 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 16 C 0.14 6.45 4.20 86.21 0.36 6.82 16 17 N -0.62 -30.67 2.87 -698.36 -2.01 -32.67 16 18 C -0.36 -19.77 9.51 84.03 0.80 -18.97 16 19 H 0.06 3.06 7.95 -2.91 -0.02 3.04 16 20 C -0.07 -4.09 4.68 84.86 0.40 -3.70 16 21 N -0.94 -57.25 12.57 21.65 0.27 -56.98 16 22 Si 1.12 50.12 29.99 68.60 2.06 52.18 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 26 C 0.10 4.10 6.74 86.35 0.58 4.68 16 27 C 0.06 1.80 6.98 72.08 0.50 2.31 16 28 O -0.39 -12.90 10.33 -148.98 -1.54 -14.44 16 29 C 0.06 1.16 5.53 86.65 0.48 1.64 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.84 7.68 -2.38 -0.02 0.82 16 33 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 1.13 8.04 -2.38 -0.02 1.11 16 38 H 0.03 0.52 7.65 -2.39 -0.02 0.50 16 39 H 0.04 0.64 7.47 -2.39 -0.02 0.63 16 40 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.06 1.08 7.84 -2.39 -0.02 1.06 16 42 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.42 8.37 8.46 -92.71 -0.78 7.58 16 44 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.05 2.85 6.68 -2.38 -0.02 2.84 16 47 H 0.01 0.26 7.76 -2.39 -0.02 0.24 16 48 H 0.25 15.89 6.77 -92.71 -0.63 15.26 16 49 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.07 2.67 7.96 -2.39 -0.02 2.66 16 51 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 52 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 53 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 54 H 0.04 0.89 7.40 -2.39 -0.02 0.87 16 Total: -1.00 -70.27 418.56 -0.99 -71.26 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.21 Total: 23.67 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 6.62 Total: 11.21 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -8.30 Total: -122.67 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -1.59 Total: -35.65 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.06 Total: 52.18 kcal Total: -70.27 -0.99 -71.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035392978.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.826 kcal (2) G-P(sol) polarization free energy of solvation -70.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds