Wall clock time and date at job start Tue Mar 31 2020 23:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46943 * 2 1 4 4 C 1.53004 * 109.46979 * 119.99886 * 2 1 3 5 5 N 1.46899 * 109.46942 * 176.79617 * 4 2 1 6 6 C 1.48559 * 110.99752 * 284.26817 * 5 4 2 7 7 C 1.54373 * 104.59421 * 200.96032 * 6 5 4 8 8 C 1.54256 * 105.06260 * 23.85151 * 7 6 5 9 9 H 1.08993 * 110.32763 * 241.00289 * 8 7 6 10 10 C 1.50701 * 110.32517 * 118.89548 * 8 7 6 11 11 O 1.21287 * 120.00115 * 241.45699 * 10 8 7 12 12 N 1.34775 * 120.00197 * 61.45344 * 10 8 7 13 13 C 1.46504 * 120.00323 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.46924 * 180.02562 * 13 12 10 15 15 H 1.08993 * 109.51552 * 304.89866 * 14 13 12 16 16 C 1.52879 * 109.62058 * 184.90496 * 14 13 12 17 17 N 1.47157 * 108.60637 * 187.89716 * 16 14 13 18 18 C 1.36931 * 120.98319 * 230.49969 * 17 16 14 19 19 H 1.08008 * 119.99917 * 24.04855 * 18 17 16 20 20 C 1.38807 * 120.00538 * 204.04967 * 18 17 16 21 21 N 1.31622 * 119.99827 * 34.19795 * 20 18 17 22 22 Si 1.86804 * 120.00313 * 214.20870 * 20 18 17 23 23 H 1.48501 * 109.47284 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.46567 * 299.99502 * 22 20 18 25 25 H 1.48505 * 109.47104 * 59.99486 * 22 20 18 26 26 C 1.47150 * 118.03176 * 50.23195 * 17 16 14 27 27 C 1.53294 * 108.38727 * 309.71151 * 26 17 16 28 28 O 1.42963 * 109.22103 * 52.30357 * 27 26 17 29 29 C 1.48553 * 110.99879 * 168.85393 * 5 4 2 30 30 H 1.09006 * 109.47493 * 304.64492 * 1 2 3 31 31 H 1.09007 * 109.47354 * 64.64450 * 1 2 3 32 32 H 1.09002 * 109.47382 * 184.64663 * 1 2 3 33 33 H 1.08993 * 109.46997 * 239.99886 * 2 1 3 34 34 H 1.08999 * 109.47012 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47007 * 299.99810 * 3 2 1 36 36 H 1.09001 * 109.46756 * 59.99963 * 3 2 1 37 37 H 1.08997 * 109.46595 * 56.79462 * 4 2 1 38 38 H 1.09003 * 109.47089 * 296.79495 * 4 2 1 39 39 H 1.09006 * 110.41510 * 82.17916 * 6 5 4 40 40 H 1.09004 * 110.51692 * 319.79055 * 6 5 4 41 41 H 1.09000 * 110.32676 * 264.95634 * 7 6 5 42 42 H 1.09009 * 110.32554 * 142.75124 * 7 6 5 43 43 H 0.97004 * 119.99974 * 0.02562 * 12 10 8 44 44 H 1.09000 * 109.46707 * 60.00433 * 13 12 10 45 45 H 1.08995 * 109.46855 * 300.00015 * 13 12 10 46 46 H 1.09001 * 109.62047 * 68.08010 * 16 14 13 47 47 H 1.08999 * 109.52437 * 307.66528 * 16 14 13 48 48 H 0.96995 * 119.99615 * 0.73365 * 21 20 18 49 49 H 1.08998 * 109.68328 * 69.44221 * 26 17 16 50 50 H 1.09008 * 109.67920 * 189.99090 * 26 17 16 51 51 H 1.08995 * 109.51260 * 172.23239 * 27 26 17 52 52 H 1.09000 * 109.51209 * 292.33182 * 27 26 17 53 53 H 1.08993 * 110.41788 * 40.25454 * 29 5 4 54 54 H 1.09001 * 110.40724 * 277.81302 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5069 -0.7886 1.2112 6 6 3.9675 -1.8225 0.2489 7 6 5.4076 -2.1548 0.6947 8 6 5.4642 -1.7696 2.1873 9 1 6.2114 -0.9929 2.3499 10 6 5.7771 -2.9800 3.0288 11 8 4.9821 -3.3616 3.8615 12 7 6.9403 -3.6384 2.8561 13 6 7.2442 -4.8154 3.6737 14 6 8.6151 -5.3694 3.2804 15 1 8.6330 -5.5702 2.2093 16 6 8.8830 -6.6665 4.0440 17 7 10.2742 -7.0778 3.7972 18 6 10.5716 -8.3524 3.3949 19 1 9.8255 -8.9467 2.8882 20 6 11.8319 -8.8808 3.6380 21 7 12.4839 -8.5507 4.7327 22 14 12.6029 -10.0602 2.4116 23 1 13.9417 -10.4773 2.9002 24 1 11.7352 -11.2561 2.2624 25 1 12.7447 -9.3843 1.0969 26 6 11.3357 -6.0771 3.9899 27 6 10.9479 -4.8072 3.2239 28 8 9.6273 -4.4130 3.6040 29 6 4.0533 -1.2370 2.5178 30 1 -0.3634 0.5842 0.8455 31 1 -0.3634 0.4401 -0.9287 32 1 -0.3634 -1.0243 0.0833 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6304 -1.7309 1.2784 38 1 1.7243 -0.1753 2.1384 39 1 3.9659 -1.4249 -0.7660 40 1 3.3366 -2.7093 0.3098 41 1 6.1260 -1.5659 0.1243 42 1 5.6063 -3.2194 0.5706 43 1 7.5763 -3.3330 2.1903 44 1 6.4831 -5.5782 3.5096 45 1 7.2551 -4.5334 4.7265 46 1 8.2031 -7.4437 3.6950 47 1 8.7333 -6.4989 5.1105 48 1 12.0792 -7.9465 5.3746 49 1 11.4373 -5.8493 5.0509 50 1 12.2793 -6.4642 3.6051 51 1 11.6497 -4.0085 3.4641 52 1 10.9752 -5.0057 2.1524 53 1 3.4353 -2.0315 2.9359 54 1 4.1164 -0.3984 3.2113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035392979.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:49 Heat of formation + Delta-G solvation = -89.812597 kcal Electronic energy + Delta-G solvation = -30093.692042 eV Core-core repulsion = 26064.553879 eV Total energy + Delta-G solvation = -4029.138163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.42339 -40.34947 -39.34887 -36.79870 -36.49308 -35.88880 -33.49991 -32.82132 -31.94472 -30.06531 -29.22865 -27.91389 -27.29524 -26.17627 -25.13229 -23.78435 -22.92035 -22.38805 -21.68124 -21.01532 -20.40363 -19.51289 -18.35676 -17.60874 -17.38111 -17.10495 -16.79197 -16.52984 -16.12079 -15.94190 -15.63912 -15.51343 -15.46020 -15.16004 -15.00764 -14.65883 -14.51914 -14.30814 -14.14936 -13.74900 -13.53491 -13.44761 -13.10436 -13.03085 -12.80786 -12.63811 -12.55745 -12.45171 -12.41840 -12.30205 -12.16997 -11.97512 -11.88645 -11.84984 -11.76332 -11.60496 -11.38401 -11.32797 -10.99910 -10.87694 -10.35612 -10.18954 -9.49790 -9.00382 -8.44642 -5.40851 1.55608 1.57851 1.64036 1.84253 2.02995 2.57575 2.66671 3.00311 3.09047 3.34946 3.43607 3.61073 3.79267 3.86256 3.95655 3.96802 4.07256 4.12195 4.22449 4.29931 4.30244 4.34657 4.36397 4.46924 4.48387 4.56432 4.57629 4.63346 4.66799 4.72496 4.74370 4.79716 4.83207 4.87221 4.90206 4.96433 4.97519 5.05824 5.07461 5.11834 5.14924 5.16938 5.29301 5.32842 5.46234 5.54941 5.76171 5.81202 6.01463 6.14837 6.27159 6.48261 6.90472 7.16330 7.67786 8.12336 8.87385 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027575 B = 0.001809 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.154475 B =15478.569328 C =15694.531709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.133 4.133 4 C 0.048 3.952 5 N -0.505 5.505 6 C 0.031 3.969 7 C -0.111 4.111 8 C -0.105 4.105 9 H 0.128 0.872 10 C 0.517 3.483 11 O -0.586 6.586 12 N -0.709 5.709 13 C 0.142 3.858 14 C 0.082 3.918 15 H 0.071 0.929 16 C 0.118 3.882 17 N -0.617 5.617 18 C -0.373 4.373 19 H 0.055 0.945 20 C -0.068 4.068 21 N -0.926 5.926 22 Si 1.114 2.886 23 H -0.292 1.292 24 H -0.277 1.277 25 H -0.276 1.276 26 C 0.120 3.880 27 C 0.060 3.940 28 O -0.386 6.386 29 C 0.048 3.952 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.035 0.965 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.416 0.584 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.015 0.985 48 H 0.252 0.748 49 H 0.005 0.995 50 H 0.057 0.943 51 H 0.115 0.885 52 H 0.056 0.944 53 H 0.040 0.960 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.180 19.826 -12.948 29.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.191 4.191 4 C -0.081 4.081 5 N -0.228 5.228 6 C -0.097 4.097 7 C -0.149 4.149 8 C -0.127 4.127 9 H 0.146 0.854 10 C 0.305 3.695 11 O -0.466 6.466 12 N -0.360 5.360 13 C 0.017 3.983 14 C 0.023 3.977 15 H 0.089 0.911 16 C -0.008 4.008 17 N -0.343 5.343 18 C -0.502 4.502 19 H 0.073 0.927 20 C -0.266 4.266 21 N -0.566 5.566 22 Si 0.938 3.062 23 H -0.219 1.219 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.005 4.005 27 C -0.018 4.018 28 O -0.305 6.305 29 C -0.080 4.080 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.053 0.947 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.252 0.748 44 H 0.102 0.898 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.033 0.967 48 H 0.061 0.939 49 H 0.023 0.977 50 H 0.075 0.925 51 H 0.133 0.867 52 H 0.074 0.926 53 H 0.059 0.941 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.265 19.311 -12.724 28.860 hybrid contribution -1.203 -0.530 1.027 1.668 sum -18.468 18.781 -11.697 28.821 Atomic orbital electron populations 1.21822 0.94538 1.01720 1.02353 1.21036 0.95557 0.97045 0.96883 1.21671 1.01624 0.94735 1.01056 1.22390 0.87193 0.98940 0.99542 1.65439 1.09732 1.43070 1.04604 1.23200 0.95062 0.93239 0.98196 1.22358 0.97990 1.02300 0.92257 1.22028 0.99916 0.94951 0.95822 0.85388 1.21050 0.80547 0.84771 0.83134 1.90683 1.49251 1.69113 1.37599 1.45808 1.20161 1.29688 1.40360 1.21128 0.93500 0.88133 0.95553 1.22518 0.87214 0.89034 0.98968 0.91124 1.21496 0.87071 0.95517 0.96762 1.44379 1.01377 1.08177 1.80364 1.20110 1.01481 0.92833 1.35765 0.92724 1.27204 0.97086 1.03106 0.99203 1.70965 1.44474 1.34375 1.06833 0.82877 0.75240 0.74258 0.73874 1.21855 1.20235 1.20149 1.21525 0.92624 0.89905 0.96483 1.23041 0.83810 0.96724 0.98208 1.87822 1.16069 1.43045 1.83527 1.22925 0.93361 0.99199 0.92554 0.92512 0.91743 0.92979 0.91351 0.92215 0.92766 0.93350 0.95237 0.90974 0.88354 0.94650 0.87632 0.90931 0.74775 0.89804 0.92143 0.91490 0.96694 0.93875 0.97659 0.92481 0.86665 0.92567 0.94137 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.19 71.98 0.66 -0.85 16 2 C -0.09 -1.04 2.98 -10.79 -0.03 -1.07 16 3 C -0.13 -1.57 9.07 71.98 0.65 -0.92 16 4 C 0.05 0.71 4.25 86.30 0.37 1.08 16 5 N -0.50 -7.95 4.70 -881.51 -4.15 -12.10 16 6 C 0.03 0.43 5.94 86.45 0.51 0.95 16 7 C -0.11 -1.44 6.57 31.49 0.21 -1.24 16 8 C -0.11 -1.78 3.45 -10.65 -0.04 -1.82 16 9 H 0.13 1.71 8.14 -2.39 -0.02 1.70 16 10 C 0.52 12.59 6.96 87.66 0.61 13.20 16 11 O -0.59 -19.33 15.46 -3.05 -0.05 -19.38 16 12 N -0.71 -16.20 5.37 -463.05 -2.49 -18.69 16 13 C 0.14 3.99 5.35 86.38 0.46 4.45 16 14 C 0.08 2.65 2.80 30.55 0.09 2.73 16 15 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 16 C 0.12 4.85 6.00 86.21 0.52 5.36 16 17 N -0.62 -30.49 2.93 -698.33 -2.04 -32.53 16 18 C -0.37 -20.50 9.47 84.03 0.80 -19.71 16 19 H 0.05 3.00 8.01 -2.91 -0.02 2.98 16 20 C -0.07 -3.79 4.44 84.86 0.38 -3.41 16 21 N -0.93 -55.67 12.67 21.65 0.27 -55.39 16 22 Si 1.11 49.31 30.03 68.60 2.06 51.37 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 24 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 26 C 0.12 5.51 5.05 86.35 0.44 5.95 16 27 C 0.06 2.06 6.99 72.08 0.50 2.56 16 28 O -0.39 -12.95 10.33 -148.98 -1.54 -14.49 16 29 C 0.05 0.90 5.77 86.45 0.50 1.40 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.83 7.40 -2.39 -0.02 0.81 16 34 H 0.06 0.81 7.70 -2.39 -0.02 0.79 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.03 0.49 7.74 -2.39 -0.02 0.47 16 38 H 0.07 1.10 8.07 -2.39 -0.02 1.08 16 39 H 0.10 1.11 7.80 -2.38 -0.02 1.10 16 40 H 0.04 0.57 7.74 -2.38 -0.02 0.55 16 41 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.01 7.65 -2.38 -0.02 0.99 16 43 H 0.42 7.62 8.45 -92.71 -0.78 6.83 16 44 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.07 2.69 7.95 -2.39 -0.02 2.67 16 47 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.25 15.63 7.14 -92.71 -0.66 14.97 16 49 H 0.01 0.27 7.94 -2.39 -0.02 0.25 16 50 H 0.06 2.88 6.56 -2.38 -0.02 2.87 16 51 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 52 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 53 H 0.04 0.97 6.79 -2.39 -0.02 0.96 16 54 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -69.02 417.98 -1.13 -70.16 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.18 Total: 22.39 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.62 Total: 8.66 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -8.40 Total: -118.71 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -1.59 Total: -33.87 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.06 Total: 51.37 kcal Total: -69.02 -1.13 -70.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035392979.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.658 kcal (2) G-P(sol) polarization free energy of solvation -69.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds