Wall clock time and date at job start Tue Mar 31 2020 23:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46909 * 2 1 4 4 C 1.53002 * 109.46907 * 119.99660 * 2 1 3 5 5 N 1.46897 * 109.47192 * 64.55182 * 4 2 1 6 6 C 1.48672 * 111.11134 * 192.22272 * 5 4 2 7 7 C 1.54373 * 104.67329 * 201.09914 * 6 5 4 8 8 C 1.54254 * 105.06045 * 23.77032 * 7 6 5 9 9 C 1.48557 * 111.00019 * 76.80358 * 5 4 2 10 10 H 1.08999 * 110.41250 * 40.14053 * 9 5 4 11 11 C 1.50697 * 110.40976 * 277.81710 * 9 5 4 12 12 O 1.21284 * 120.00585 * 335.68745 * 11 9 5 13 13 N 1.34782 * 120.00060 * 155.68569 * 11 9 5 14 14 C 1.46495 * 120.00320 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.47240 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.55096 * 304.86814 * 15 14 13 17 17 C 1.52876 * 109.58087 * 184.88292 * 15 14 13 18 18 N 1.47151 * 108.60625 * 187.92295 * 17 15 14 19 19 C 1.36938 * 120.98203 * 230.49911 * 18 17 15 20 20 H 1.08003 * 119.99636 * 26.58219 * 19 18 17 21 21 C 1.38813 * 120.00090 * 206.58820 * 19 18 17 22 22 N 1.31615 * 120.00208 * 15.83513 * 21 19 18 23 23 Si 1.86802 * 119.99722 * 195.83873 * 21 19 18 24 24 H 1.48497 * 109.47210 * 269.99553 * 23 21 19 25 25 H 1.48505 * 109.47416 * 30.00032 * 23 21 19 26 26 H 1.48499 * 109.47137 * 149.99710 * 23 21 19 27 27 C 1.47144 * 118.03712 * 50.22376 * 18 17 15 28 28 C 1.53293 * 108.38578 * 309.71661 * 27 18 17 29 29 O 1.42954 * 109.51424 * 64.99858 * 15 14 13 30 30 H 1.08996 * 109.46953 * 54.84194 * 1 2 3 31 31 H 1.09001 * 109.46914 * 174.84103 * 1 2 3 32 32 H 1.08999 * 109.47303 * 294.84208 * 1 2 3 33 33 H 1.08994 * 109.47324 * 239.99542 * 2 1 3 34 34 H 1.08995 * 109.47160 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46958 * 299.99561 * 3 2 1 36 36 H 1.08994 * 109.47502 * 59.99650 * 3 2 1 37 37 H 1.09001 * 109.47205 * 304.54945 * 4 2 1 38 38 H 1.09002 * 109.47010 * 184.55023 * 4 2 1 39 39 H 1.09001 * 110.44345 * 82.25463 * 6 5 4 40 40 H 1.09003 * 110.40246 * 319.91799 * 6 5 4 41 41 H 1.09000 * 110.32205 * 264.86947 * 7 6 5 42 42 H 1.09007 * 110.32276 * 142.66544 * 7 6 5 43 43 H 1.09007 * 110.32130 * 241.10332 * 8 7 6 44 44 H 1.09002 * 110.32612 * 118.90033 * 8 7 6 45 45 H 0.96999 * 119.99472 * 0.02562 * 13 11 9 46 46 H 1.09000 * 109.47435 * 60.00243 * 14 13 11 47 47 H 1.09005 * 109.47256 * 300.00153 * 14 13 11 48 48 H 1.08995 * 109.62165 * 68.09949 * 17 15 14 49 49 H 1.09007 * 109.52798 * 307.68306 * 17 15 14 50 50 H 0.96992 * 119.99948 * 180.02562 * 22 21 19 51 51 H 1.09003 * 109.68728 * 69.44316 * 27 18 17 52 52 H 1.09001 * 109.68475 * 189.99396 * 27 18 17 53 53 H 1.09003 * 109.51319 * 172.22776 * 28 27 18 54 54 H 1.08999 * 109.51440 * 292.32965 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6421 -2.1342 1.1957 6 6 1.8561 -2.8009 2.5072 7 6 1.9289 -4.3064 2.1734 8 6 2.3559 -4.3683 0.6924 9 6 2.5052 -2.8951 0.2560 10 1 3.5429 -2.5745 0.3485 11 6 2.0251 -2.7155 -1.1611 12 8 0.8681 -2.4228 -1.3771 13 7 2.8815 -2.8801 -2.1888 14 6 2.4150 -2.7050 -3.5664 15 6 3.5761 -2.9476 -4.5328 16 1 4.4096 -2.2952 -4.2727 17 6 3.1243 -2.6475 -5.9621 18 7 4.1878 -3.0671 -6.8886 19 6 4.6556 -2.2181 -7.8557 20 1 4.5955 -1.1495 -7.7112 21 6 5.2070 -2.7309 -9.0219 22 7 5.0066 -3.9906 -9.3461 23 14 6.2337 -1.6329 -10.1309 24 1 5.3530 -0.9769 -11.1305 25 1 6.9108 -0.5959 -9.3114 26 1 7.2536 -2.4531 -10.8325 27 6 4.7379 -4.4239 -6.7411 28 6 5.1148 -4.6356 -5.2704 29 8 3.9927 -4.3123 -4.4457 30 1 -0.3633 0.5917 -0.8402 31 1 -0.3633 -1.0235 -0.0924 32 1 -0.3634 0.4317 0.9326 33 1 1.8934 -0.5139 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6116 -0.2565 2.1374 38 1 3.1270 -0.6511 1.2910 39 1 1.0202 -2.6000 3.1773 40 1 2.7911 -2.4654 2.9560 41 1 0.9518 -4.7711 2.3055 42 1 2.6711 -4.7982 2.8023 43 1 1.5883 -4.8635 0.0975 44 1 3.3076 -4.8906 0.5943 45 1 3.8068 -3.1145 -2.0162 46 1 2.0395 -1.6900 -3.6967 47 1 1.6161 -3.4172 -3.7728 48 1 2.9427 -1.5784 -6.0717 49 1 2.2098 -3.1997 -6.1787 50 1 5.3922 -4.3490 -10.1608 51 1 3.9887 -5.1581 -7.0374 52 1 5.6244 -4.5306 -7.3663 53 1 5.3947 -5.6771 -5.1126 54 1 5.9545 -3.9899 -5.0132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035423145.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:06 Heat of formation + Delta-G solvation = -78.557901 kcal Electronic energy + Delta-G solvation = -31303.002914 eV Core-core repulsion = 27274.352791 eV Total energy + Delta-G solvation = -4028.650123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.40113 -40.21915 -38.90863 -36.62664 -36.46076 -35.65554 -33.39846 -32.48198 -32.10008 -30.49172 -29.10326 -27.89995 -27.09249 -26.29630 -25.01079 -23.88838 -22.87802 -21.91855 -21.67239 -20.98076 -20.52302 -18.91593 -18.37848 -17.65818 -17.26636 -17.05834 -16.84500 -16.16346 -15.98387 -15.85824 -15.51333 -15.44962 -15.24350 -15.00007 -14.83176 -14.57178 -14.53051 -14.27888 -13.96590 -13.70973 -13.42245 -13.22439 -13.07781 -13.00095 -12.84000 -12.73422 -12.68865 -12.51892 -12.36795 -12.20583 -12.09443 -12.08292 -11.88421 -11.72258 -11.63050 -11.49439 -11.35519 -11.31095 -10.82107 -10.68768 -10.53401 -10.02306 -9.37899 -8.76318 -7.92581 -5.40883 1.46024 1.46917 1.56945 1.72131 2.08219 2.46962 2.76931 3.07578 3.23004 3.47760 3.59602 3.66743 3.88293 3.98716 4.01743 4.04897 4.11189 4.17101 4.24767 4.29680 4.35207 4.47236 4.51827 4.56013 4.59332 4.62488 4.69293 4.70373 4.72583 4.78646 4.82872 4.85093 4.88950 4.92348 5.04186 5.05322 5.07386 5.11817 5.17850 5.23230 5.26096 5.31845 5.40486 5.51240 5.54228 5.59815 5.68581 5.83939 6.08140 6.24688 6.32065 6.65188 7.04942 7.37734 7.72536 8.26333 9.13603 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017140 B = 0.002508 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.172013 B =11161.264347 C =12201.873967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.093 4.093 3 C -0.143 4.143 4 C 0.053 3.947 5 N -0.506 5.506 6 C 0.034 3.966 7 C -0.117 4.117 8 C -0.111 4.111 9 C 0.047 3.953 10 H 0.088 0.912 11 C 0.519 3.481 12 O -0.551 6.551 13 N -0.717 5.717 14 C 0.147 3.853 15 C 0.082 3.918 16 H 0.068 0.932 17 C 0.116 3.884 18 N -0.613 5.613 19 C -0.267 4.267 20 H 0.072 0.928 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.972 3.028 24 H -0.286 1.286 25 H -0.267 1.267 26 H -0.291 1.291 27 C 0.143 3.857 28 C 0.054 3.946 29 O -0.388 6.388 30 H 0.031 0.969 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.055 0.945 44 H 0.096 0.904 45 H 0.410 0.590 46 H 0.082 0.918 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.015 0.985 50 H 0.252 0.748 51 H -0.003 1.003 52 H 0.068 0.932 53 H 0.109 0.891 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.111 3.258 26.836 27.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.075 4.075 5 N -0.231 5.231 6 C -0.093 4.093 7 C -0.155 4.155 8 C -0.149 4.149 9 C -0.064 4.064 10 H 0.105 0.895 11 C 0.306 3.694 12 O -0.428 6.428 13 N -0.370 5.370 14 C 0.022 3.978 15 C 0.022 3.978 16 H 0.086 0.914 17 C -0.010 4.010 18 N -0.338 5.338 19 C -0.397 4.397 20 H 0.090 0.910 21 C -0.245 4.245 22 N -0.582 5.582 23 Si 0.800 3.200 24 H -0.213 1.213 25 H -0.192 1.192 26 H -0.217 1.217 27 C 0.018 3.982 28 C -0.024 4.024 29 O -0.308 6.308 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.115 0.885 45 H 0.246 0.754 46 H 0.100 0.900 47 H 0.076 0.924 48 H 0.088 0.912 49 H 0.033 0.967 50 H 0.061 0.939 51 H 0.016 0.984 52 H 0.086 0.914 53 H 0.127 0.873 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.554 3.274 26.494 26.817 hybrid contribution 1.532 0.368 -1.453 2.143 sum -1.022 3.642 25.041 25.325 Atomic orbital electron populations 1.21566 0.95111 1.01730 0.99765 1.21105 0.96664 0.95818 0.97579 1.21801 1.00931 0.95306 1.02039 1.22384 0.98242 0.88105 0.98781 1.65067 1.50067 1.01998 1.05955 1.23193 1.01606 0.93951 0.90548 1.22280 1.02707 0.95769 0.94716 1.22249 1.02879 0.92458 0.97364 1.22670 0.96707 0.97163 0.89899 0.89452 1.20721 0.85644 0.75871 0.87214 1.90680 1.19095 1.47310 1.85727 1.45885 1.14325 1.71609 1.05213 1.21058 0.95129 1.01497 0.80100 1.22526 0.96450 0.84148 0.94642 0.91400 1.21514 0.90702 0.99156 0.89627 1.44327 1.40467 1.13150 1.35832 1.19539 1.34859 0.89691 0.95607 0.91045 1.25854 1.02824 0.97871 0.97989 1.70180 1.47288 1.15448 1.25284 0.85213 0.78231 0.78072 0.78527 1.21274 1.19203 1.21672 1.21313 0.97733 0.85075 0.94115 1.23161 0.87618 1.01214 0.90372 1.87806 1.50219 1.27225 1.65508 0.94957 0.92578 0.92933 0.93304 0.92374 0.93265 0.91596 0.89524 0.93569 0.89326 0.92116 0.91173 0.88751 0.92626 0.88537 0.75385 0.90029 0.92436 0.91154 0.96709 0.93895 0.98440 0.91379 0.87266 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 8.58 71.98 0.62 -2.36 16 2 C -0.09 -1.97 2.41 -10.79 -0.03 -1.99 16 3 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 4 C 0.05 0.90 4.25 86.30 0.37 1.26 16 5 N -0.51 -9.47 4.27 -860.75 -3.67 -13.14 16 6 C 0.03 0.43 6.45 86.43 0.56 0.99 16 7 C -0.12 -1.40 7.00 31.49 0.22 -1.18 16 8 C -0.11 -1.75 6.54 31.49 0.21 -1.54 16 9 C 0.05 0.88 2.66 44.31 0.12 1.00 16 10 H 0.09 1.28 7.72 -2.39 -0.02 1.26 16 11 C 0.52 13.26 4.83 87.66 0.42 13.68 16 12 O -0.55 -18.24 13.28 -3.04 -0.04 -18.28 16 13 N -0.72 -17.45 5.50 -463.05 -2.55 -20.00 16 14 C 0.15 4.30 5.34 86.38 0.46 4.76 16 15 C 0.08 2.72 2.80 30.55 0.09 2.81 16 16 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 17 C 0.12 4.85 6.00 86.21 0.52 5.37 16 18 N -0.61 -30.81 3.05 -698.36 -2.13 -32.94 16 19 C -0.27 -14.52 9.65 84.03 0.81 -13.71 16 20 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 21 C -0.05 -2.75 4.97 84.86 0.42 -2.33 16 22 N -0.94 -54.87 11.12 21.65 0.24 -54.63 16 23 Si 0.97 43.99 29.58 68.60 2.03 46.02 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 26 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 27 C 0.14 6.87 5.44 86.35 0.47 7.34 16 28 C 0.05 1.96 6.98 72.08 0.50 2.46 16 29 O -0.39 -13.67 10.33 -148.98 -1.54 -15.21 16 30 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 1.65 6.29 -2.39 -0.02 1.64 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 1.28 5.11 -2.39 -0.01 1.27 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.26 8.06 -2.39 -0.02 1.25 16 38 H 0.05 0.68 7.71 -2.39 -0.02 0.66 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 0.59 8.00 -2.39 -0.02 0.57 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.05 1.14 7.85 -2.38 -0.02 1.12 16 44 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.41 8.27 8.47 -92.71 -0.79 7.48 16 46 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 48 H 0.07 2.78 7.96 -2.39 -0.02 2.76 16 49 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 50 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 51 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 52 H 0.07 3.61 6.15 -2.39 -0.01 3.59 16 53 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 54 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -68.55 411.31 -1.17 -69.72 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.08 Total: 23.72 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 6.41 Total: 14.75 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -8.11 Total: -120.71 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -1.58 Total: -33.50 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -68.55 -1.17 -69.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035423145.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.835 kcal (2) G-P(sol) polarization free energy of solvation -68.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds