Wall clock time and date at job start Tue Mar 31 2020 23:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47133 * 2 1 4 4 C 1.52998 * 109.47342 * 120.00329 * 2 1 3 5 5 N 1.46900 * 109.47182 * 174.99745 * 4 2 1 6 6 C 1.48529 * 111.00125 * 307.39854 * 5 4 2 7 7 C 1.54936 * 103.22764 * 200.27667 * 6 5 4 8 8 C 1.54604 * 102.91932 * 37.41363 * 7 6 5 9 9 C 1.47904 * 111.00026 * 189.99798 * 5 4 2 10 10 H 1.08997 * 110.07813 * 26.40183 * 9 5 4 11 11 C 1.50699 * 109.91669 * 265.19864 * 9 5 4 12 12 O 1.21280 * 120.00566 * 0.95473 * 11 9 5 13 13 N 1.34773 * 119.99737 * 180.95586 * 11 9 5 14 14 C 1.46501 * 120.00287 * 179.97438 * 13 11 9 15 15 C 1.52995 * 109.47364 * 180.02562 * 14 13 11 16 16 H 1.08994 * 109.51745 * 59.99951 * 15 14 13 17 17 C 1.53300 * 109.51200 * 180.10440 * 15 14 13 18 18 N 1.47164 * 108.37596 * 172.17775 * 17 15 14 19 19 C 1.36935 * 120.94450 * 129.52833 * 18 17 15 20 20 H 1.08009 * 119.99715 * 206.25638 * 19 18 17 21 21 C 1.38801 * 120.00377 * 26.25314 * 19 18 17 22 22 N 1.31623 * 120.00359 * 16.90911 * 21 19 18 23 23 Si 1.86805 * 120.00197 * 196.91618 * 21 19 18 24 24 H 1.48493 * 109.47426 * 94.61881 * 23 21 19 25 25 H 1.48503 * 109.47054 * 214.61747 * 23 21 19 26 26 H 1.48502 * 109.47102 * 334.61569 * 23 21 19 27 27 C 1.47150 * 118.07336 * 309.53970 * 18 17 15 28 28 C 1.53300 * 108.38444 * 50.50573 * 27 18 17 29 29 O 1.42960 * 109.51175 * 299.89939 * 15 14 13 30 30 H 1.09010 * 109.46946 * 299.99561 * 1 2 3 31 31 H 1.08999 * 109.47418 * 59.99714 * 1 2 3 32 32 H 1.08996 * 109.47353 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46805 * 240.00794 * 2 1 3 34 34 H 1.09004 * 109.47022 * 60.00784 * 3 2 1 35 35 H 1.09003 * 109.47095 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47202 * 300.00418 * 3 2 1 37 37 H 1.09001 * 109.47297 * 54.99988 * 4 2 1 38 38 H 1.08994 * 109.46977 * 294.99817 * 4 2 1 39 39 H 1.08998 * 110.66744 * 81.84263 * 6 5 4 40 40 H 1.09005 * 110.66667 * 318.71249 * 6 5 4 41 41 H 1.09001 * 110.72727 * 279.05538 * 7 6 5 42 42 H 1.09008 * 110.72568 * 155.76700 * 7 6 5 43 43 H 1.08997 * 110.30545 * 96.96232 * 8 7 6 44 44 H 1.09003 * 110.30393 * 219.02677 * 8 7 6 45 45 H 0.97004 * 120.00068 * 359.97438 * 13 11 9 46 46 H 1.09001 * 109.47166 * 300.00180 * 14 13 11 47 47 H 1.09005 * 109.46814 * 59.99692 * 14 13 11 48 48 H 1.09006 * 109.67918 * 291.95098 * 17 15 14 49 49 H 1.08993 * 109.68285 * 52.49957 * 17 15 14 50 50 H 0.96997 * 120.00786 * 179.97438 * 22 21 19 51 51 H 1.08998 * 109.68700 * 290.78384 * 27 18 17 52 52 H 1.09003 * 109.68340 * 170.22879 * 27 18 17 53 53 H 1.08997 * 109.51504 * 187.77011 * 28 27 18 54 54 H 1.09001 * 109.55334 * 67.64749 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5040 -0.8267 1.1903 6 6 3.9430 -1.4315 -0.0933 7 6 5.3720 -1.9391 0.2242 8 6 5.2422 -2.4505 1.6774 9 6 4.0142 -1.7206 2.2525 10 1 3.2489 -2.4446 2.5318 11 6 4.4168 -0.9090 3.4568 12 8 4.2790 0.2959 3.4498 13 7 4.9301 -1.5222 4.5416 14 6 5.3220 -0.7334 5.7122 15 6 5.8706 -1.6650 6.7948 16 1 6.7392 -2.1991 6.4097 17 6 6.2786 -0.8407 8.0212 18 7 6.6229 -1.7686 9.1103 19 6 7.8005 -1.6418 9.7974 20 1 8.2469 -2.5055 10.2678 21 6 8.4206 -0.4034 9.8895 22 7 7.7438 0.6931 9.6208 23 14 10.2156 -0.2927 10.3945 24 1 11.0693 -0.2430 9.1804 25 1 10.4284 0.9367 11.1998 26 1 10.5762 -1.4838 11.2047 27 6 5.6652 -2.8364 9.4390 28 6 5.2882 -3.5634 8.1431 29 8 4.8614 -2.6045 7.1725 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5137 -0.8901 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6054 -1.7199 1.2951 38 1 1.7517 -0.1584 2.1369 39 1 3.9680 -0.6812 -0.8835 40 1 3.2925 -2.2614 -0.3699 41 1 6.0930 -1.1238 0.1652 42 1 5.6508 -2.7515 -0.4470 43 1 5.0800 -3.5283 1.6861 44 1 6.1358 -2.1983 2.2484 45 1 5.0400 -2.4860 4.5474 46 1 6.0917 -0.0165 5.4262 47 1 4.4535 -0.1993 6.0978 48 1 7.1428 -0.2228 7.7772 49 1 5.4481 -0.2057 8.3295 50 1 8.1769 1.5586 9.6855 51 1 4.7725 -2.4029 9.8898 52 1 6.1238 -3.5395 10.1343 53 1 4.4784 -4.2654 8.3419 54 1 6.1545 -4.1050 7.7633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035423147.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:10 Heat of formation + Delta-G solvation = -80.874338 kcal Electronic energy + Delta-G solvation = -30857.799734 eV Core-core repulsion = 26829.049162 eV Total energy + Delta-G solvation = -4028.750571 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.33554 -40.21549 -39.17876 -36.52307 -36.44937 -35.76981 -33.27479 -32.66964 -32.04635 -30.47541 -28.99666 -27.96789 -27.11902 -26.32458 -25.08936 -23.76259 -22.81092 -22.52714 -21.58335 -20.76743 -20.41675 -18.94616 -18.31995 -17.51730 -17.39425 -17.09274 -16.85442 -16.15767 -16.05590 -15.94654 -15.59603 -15.52356 -15.11168 -14.99150 -14.84556 -14.60661 -14.48345 -14.24416 -13.97924 -13.78225 -13.67902 -13.20835 -13.15340 -13.00896 -12.78374 -12.69474 -12.54335 -12.50154 -12.41702 -12.18432 -12.13215 -12.08931 -11.88816 -11.83398 -11.69936 -11.58996 -11.40245 -11.31811 -10.87485 -10.69325 -10.56485 -10.07655 -9.30761 -8.77479 -7.92534 -5.40568 1.45567 1.46835 1.56416 1.71037 2.04663 2.46633 2.77528 3.05446 3.22621 3.48617 3.57404 3.63237 3.90146 3.96138 4.01286 4.05690 4.07131 4.14950 4.23418 4.26565 4.32901 4.44876 4.50762 4.53961 4.59794 4.61419 4.67340 4.70981 4.76702 4.80148 4.82890 4.84379 4.89567 4.96798 5.02277 5.04584 5.05994 5.08536 5.15150 5.21515 5.24621 5.28541 5.41940 5.44737 5.50970 5.51130 5.58755 5.87290 6.10635 6.25131 6.31439 6.64765 7.03670 7.34560 7.72863 8.26465 9.13346 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.002291 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.815045 B =12220.497543 C =12410.667045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.135 4.135 4 C 0.056 3.944 5 N -0.516 5.516 6 C 0.038 3.962 7 C -0.120 4.120 8 C -0.120 4.120 9 C 0.054 3.946 10 H 0.095 0.905 11 C 0.513 3.487 12 O -0.570 6.570 13 N -0.711 5.711 14 C 0.147 3.853 15 C 0.079 3.921 16 H 0.066 0.934 17 C 0.159 3.841 18 N -0.614 5.614 19 C -0.265 4.265 20 H 0.076 0.924 21 C -0.052 4.052 22 N -0.937 5.937 23 Si 0.971 3.029 24 H -0.284 1.284 25 H -0.297 1.297 26 H -0.264 1.264 27 C 0.101 3.899 28 C 0.057 3.943 29 O -0.389 6.389 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.034 0.966 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.413 0.587 46 H 0.069 0.931 47 H 0.052 0.948 48 H 0.066 0.934 49 H -0.003 1.003 50 H 0.251 0.749 51 H 0.014 0.986 52 H 0.073 0.927 53 H 0.122 0.878 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.215 -11.185 -22.579 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.193 4.193 4 C -0.072 4.072 5 N -0.240 5.240 6 C -0.089 4.089 7 C -0.158 4.158 8 C -0.158 4.158 9 C -0.058 4.058 10 H 0.113 0.887 11 C 0.299 3.701 12 O -0.448 6.448 13 N -0.365 5.365 14 C 0.022 3.978 15 C 0.020 3.980 16 H 0.084 0.916 17 C 0.033 3.967 18 N -0.339 5.339 19 C -0.394 4.394 20 H 0.093 0.907 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.799 3.201 24 H -0.211 1.211 25 H -0.224 1.224 26 H -0.189 1.189 27 C -0.024 4.024 28 C -0.020 4.020 29 O -0.309 6.309 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.086 0.914 45 H 0.250 0.750 46 H 0.088 0.912 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.015 0.985 50 H 0.060 0.940 51 H 0.032 0.968 52 H 0.092 0.908 53 H 0.140 0.860 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.250 -9.641 -22.544 26.576 hybrid contribution 0.785 -0.157 1.207 1.448 sum -9.465 -9.798 -21.337 25.316 Atomic orbital electron populations 1.21800 0.94069 1.02250 1.02073 1.21162 0.96140 0.96377 0.97117 1.21684 1.01048 0.95833 1.00697 1.22357 0.86695 0.99244 0.98916 1.64269 1.11355 1.46188 1.02197 1.23313 0.95801 0.98253 0.91507 1.22508 0.96518 1.01267 0.95527 1.22459 0.95423 1.01041 0.96913 1.22349 0.99780 0.92904 0.90814 0.88742 1.21169 0.76423 0.88338 0.84143 1.90675 1.54926 1.16638 1.82516 1.45791 1.64693 1.11616 1.14356 1.21001 0.99391 0.93170 0.84270 1.22716 0.90482 0.90694 0.94124 0.91627 1.21083 0.98099 0.91117 0.86448 1.44364 1.19112 1.33592 1.36824 1.19578 0.97669 0.93237 1.28961 0.90663 1.25872 1.02881 0.95023 1.01011 1.70191 1.36280 0.97321 1.54497 0.85194 0.80066 0.77162 0.77689 1.21090 1.22396 1.18851 1.21840 0.92278 0.91362 0.96938 1.23088 1.00827 0.90152 0.87959 1.87790 1.38336 1.44396 1.60345 0.93492 0.91454 0.91844 0.89719 0.94647 0.93243 0.92092 0.93435 0.93323 0.89482 0.91752 0.92069 0.88073 0.87474 0.91397 0.75024 0.91240 0.92994 0.91583 0.98492 0.93980 0.96818 0.90823 0.86045 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.19 71.98 0.66 -1.27 16 2 C -0.09 -1.44 2.60 -10.79 -0.03 -1.46 16 3 C -0.14 -2.65 9.08 71.98 0.65 -2.00 16 4 C 0.06 1.11 4.42 86.30 0.38 1.49 16 5 N -0.52 -11.03 3.99 -862.46 -3.44 -14.47 16 6 C 0.04 0.55 5.09 86.65 0.44 0.99 16 7 C -0.12 -1.62 7.06 31.80 0.22 -1.40 16 8 C -0.12 -1.80 6.46 31.47 0.20 -1.59 16 9 C 0.05 1.11 2.87 44.31 0.13 1.24 16 10 H 0.09 1.62 7.58 -2.39 -0.02 1.60 16 11 C 0.51 15.38 7.00 87.66 0.61 15.99 16 12 O -0.57 -22.77 16.46 -3.03 -0.05 -22.82 16 13 N -0.71 -20.11 5.32 -463.07 -2.46 -22.57 16 14 C 0.15 5.22 5.37 86.38 0.46 5.68 16 15 C 0.08 2.99 2.86 30.69 0.09 3.08 16 16 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 17 C 0.16 7.81 4.73 86.35 0.41 8.21 16 18 N -0.61 -30.83 3.05 -697.50 -2.13 -32.96 16 19 C -0.26 -14.36 9.65 84.03 0.81 -13.55 16 20 H 0.08 3.90 7.88 -2.91 -0.02 3.88 16 21 C -0.05 -2.92 4.94 84.86 0.42 -2.50 16 22 N -0.94 -55.98 11.14 21.65 0.24 -55.74 16 23 Si 0.97 44.50 29.59 68.60 2.03 46.53 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 27 C 0.10 4.07 6.74 86.36 0.58 4.66 16 28 C 0.06 1.80 6.99 72.08 0.50 2.30 16 29 O -0.39 -13.63 10.14 -148.98 -1.51 -15.14 16 30 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 1.12 6.52 -2.39 -0.02 1.10 16 34 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.05 1.14 7.75 -2.39 -0.02 1.12 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 0.78 7.82 -2.39 -0.02 0.76 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.23 7.56 -2.39 -0.02 1.22 16 40 H 0.06 0.70 8.01 -2.38 -0.02 0.68 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.20 7.63 -2.39 -0.02 1.18 16 45 H 0.41 9.33 8.31 -92.71 -0.77 8.56 16 46 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 48 H 0.07 3.62 6.15 -2.38 -0.01 3.60 16 49 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 50 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 51 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 52 H 0.07 2.75 7.96 -2.39 -0.02 2.74 16 53 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 54 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -72.44 417.79 -0.68 -73.12 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.09 Total: 24.18 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 6.55 Total: 19.87 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -7.79 Total: -125.73 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -1.56 Total: -37.96 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -72.44 -0.68 -73.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035423147.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.759 kcal (2) G-P(sol) polarization free energy of solvation -72.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds