Wall clock time and date at job start Tue Mar 31 2020 23:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 C 1.52999 * 109.46903 * 119.99915 * 2 1 3 5 5 N 1.46898 * 109.47574 * 64.99789 * 4 2 1 6 6 C 1.47445 * 110.99595 * 69.15428 * 5 4 2 7 7 C 1.54324 * 107.22940 * 123.26023 * 6 5 4 8 8 C 1.55253 * 103.08557 * 22.20587 * 7 6 5 9 9 C 1.47845 * 111.00266 * 189.99896 * 5 4 2 10 10 H 1.08997 * 110.37528 * 332.57917 * 9 5 4 11 11 C 1.50698 * 110.37296 * 94.80810 * 9 5 4 12 12 O 1.21284 * 119.99823 * 358.45170 * 11 9 5 13 13 N 1.34771 * 119.99908 * 178.44269 * 11 9 5 14 14 C 1.46512 * 119.99872 * 180.02562 * 13 11 9 15 15 C 1.52999 * 109.46814 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.55579 * 304.87156 * 15 14 13 17 17 C 1.52880 * 109.57949 * 184.88093 * 15 14 13 18 18 N 1.47153 * 108.60477 * 187.92021 * 17 15 14 19 19 C 1.36941 * 120.97852 * 230.49937 * 18 17 15 20 20 H 1.07991 * 120.00597 * 26.03887 * 19 18 17 21 21 C 1.38817 * 119.99578 * 206.03493 * 19 18 17 22 22 N 1.31620 * 119.99958 * 17.04318 * 21 19 18 23 23 Si 1.86796 * 119.99844 * 197.03206 * 21 19 18 24 24 H 1.48507 * 109.46822 * 84.89845 * 23 21 19 25 25 H 1.48505 * 109.47623 * 324.89944 * 23 21 19 26 26 H 1.48504 * 109.47393 * 204.89366 * 23 21 19 27 27 C 1.47150 * 118.03679 * 50.23227 * 18 17 15 28 28 C 1.53296 * 108.38239 * 309.71043 * 27 18 17 29 29 O 1.42955 * 109.51505 * 65.00120 * 15 14 13 30 30 H 1.09003 * 109.47299 * 300.00023 * 1 2 3 31 31 H 1.09000 * 109.47438 * 60.00301 * 1 2 3 32 32 H 1.09008 * 109.47329 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47052 * 239.99500 * 2 1 3 34 34 H 1.08998 * 109.46889 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46750 * 300.00120 * 3 2 1 36 36 H 1.09003 * 109.47084 * 59.99845 * 3 2 1 37 37 H 1.09004 * 109.47195 * 305.00204 * 4 2 1 38 38 H 1.08999 * 109.47291 * 185.00511 * 4 2 1 39 39 H 1.08999 * 109.89225 * 242.66570 * 6 5 4 40 40 H 1.08995 * 109.89142 * 3.85552 * 6 5 4 41 41 H 1.09001 * 110.70288 * 140.66744 * 7 6 5 42 42 H 1.08998 * 110.70421 * 263.72590 * 7 6 5 43 43 H 1.09002 * 111.08841 * 206.37879 * 8 7 6 44 44 H 1.09000 * 110.94712 * 82.53307 * 8 7 6 45 45 H 0.97003 * 120.00329 * 0.02562 * 13 11 9 46 46 H 1.08998 * 109.46657 * 60.00651 * 14 13 11 47 47 H 1.08998 * 109.46615 * 300.00115 * 14 13 11 48 48 H 1.08998 * 109.61705 * 68.10269 * 17 15 14 49 49 H 1.08995 * 109.52497 * 307.68875 * 17 15 14 50 50 H 0.96999 * 119.99771 * 180.02562 * 22 21 19 51 51 H 1.08996 * 109.68286 * 69.43260 * 27 18 17 52 52 H 1.09004 * 109.68187 * 189.99248 * 27 18 17 53 53 H 1.09000 * 109.51103 * 172.22762 * 28 27 18 54 54 H 1.09004 * 109.51235 * 292.38337 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 -2.1367 1.1906 6 6 2.3917 -2.8443 0.1299 7 6 3.1262 -4.0268 0.7961 8 6 2.3101 -4.2599 2.0961 9 6 1.9140 -2.8122 2.4791 10 1 2.7329 -2.3212 3.0050 11 6 0.6717 -2.8163 3.3322 12 8 -0.3409 -2.2825 2.9314 13 7 0.6859 -3.4134 4.5404 14 6 -0.5220 -3.4179 5.3695 15 6 -0.2381 -4.1542 6.6802 16 1 0.1406 -5.1530 6.4630 17 6 -1.5272 -4.2668 7.4943 18 7 -1.1973 -4.8033 8.8242 19 6 -1.8821 -5.8692 9.3440 20 1 -2.3535 -6.5821 8.6838 21 6 -1.9702 -6.0335 10.7196 22 7 -1.7028 -5.0244 11.5213 23 14 -2.4684 -7.6865 11.4328 24 1 -1.2711 -8.5576 11.5464 25 1 -3.4661 -8.3302 10.5408 26 1 -3.0639 -7.4859 12.7783 27 6 -0.1060 -4.1644 9.5765 28 6 1.1175 -4.0602 8.6588 29 8 0.7352 -3.4282 7.4347 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6052 -0.2617 2.1370 38 1 3.1262 -0.6443 1.2953 39 1 1.6966 -3.2161 -0.6228 40 1 3.1146 -2.1707 -0.3303 41 1 3.0947 -4.9093 0.1570 42 1 4.1564 -3.7583 1.0296 43 1 2.9280 -4.7137 2.8710 44 1 1.4268 -4.8671 1.8981 45 1 1.4959 -3.8401 4.8610 46 1 -1.3271 -3.9229 4.8357 47 1 -0.8175 -2.3914 5.5864 48 1 -2.2214 -4.9385 6.9893 49 1 -1.9798 -3.2807 7.5981 50 1 -1.7640 -5.1393 12.4825 51 1 -0.4130 -3.1677 9.8935 52 1 0.1406 -4.7683 10.4498 53 1 1.8905 -3.4679 9.1484 54 1 1.5011 -5.0586 8.4487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035423148.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:14 Heat of formation + Delta-G solvation = -81.978483 kcal Electronic energy + Delta-G solvation = -30672.363083 eV Core-core repulsion = 26643.564632 eV Total energy + Delta-G solvation = -4028.798450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.27138 -40.22365 -39.15692 -36.52607 -36.48205 -35.69149 -33.40006 -32.50458 -31.94482 -30.54052 -29.09900 -27.93736 -27.07146 -26.31799 -25.00371 -23.86007 -22.85391 -22.40775 -21.62656 -20.70962 -20.37324 -18.90619 -18.34093 -17.59594 -17.47310 -16.95061 -16.77019 -16.21616 -16.05585 -15.88415 -15.64774 -15.48595 -15.22368 -15.01433 -14.80364 -14.59771 -14.31053 -14.22228 -13.92250 -13.78345 -13.62368 -13.22931 -13.12789 -13.01263 -12.76434 -12.70677 -12.65373 -12.53853 -12.48012 -12.17310 -12.08835 -12.07646 -11.87582 -11.80114 -11.63213 -11.58195 -11.43138 -11.34085 -10.82369 -10.73087 -10.53829 -10.04628 -9.20524 -8.77160 -7.92313 -5.39815 1.46995 1.47612 1.56614 1.73469 2.06442 2.47278 2.77060 3.05489 3.22554 3.48058 3.56712 3.65946 3.92349 3.98705 3.99329 4.04401 4.09979 4.14238 4.23748 4.27719 4.31044 4.47797 4.52170 4.56185 4.57498 4.62099 4.70597 4.71086 4.77773 4.78066 4.84339 4.85786 4.89172 4.95050 4.98779 5.05673 5.07261 5.10499 5.13145 5.23323 5.27114 5.33608 5.44836 5.46706 5.54218 5.55773 5.60177 5.94935 6.16326 6.24845 6.32136 6.65923 7.04966 7.36284 7.72881 8.26557 9.13816 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.002096 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.809211 B =13357.092506 C =13712.172856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.062 3.938 5 N -0.526 5.526 6 C 0.042 3.958 7 C -0.132 4.132 8 C -0.115 4.115 9 C 0.058 3.942 10 H 0.093 0.907 11 C 0.516 3.484 12 O -0.565 6.565 13 N -0.714 5.714 14 C 0.145 3.855 15 C 0.082 3.918 16 H 0.071 0.929 17 C 0.116 3.884 18 N -0.613 5.613 19 C -0.266 4.266 20 H 0.073 0.927 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.973 3.027 24 H -0.280 1.280 25 H -0.269 1.269 26 H -0.296 1.296 27 C 0.142 3.858 28 C 0.054 3.946 29 O -0.389 6.389 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.068 0.932 45 H 0.412 0.588 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.014 0.986 50 H 0.252 0.748 51 H -0.003 1.003 52 H 0.068 0.932 53 H 0.109 0.891 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.191 4.573 -23.752 28.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.104 4.104 3 C -0.202 4.202 4 C -0.066 4.066 5 N -0.251 5.251 6 C -0.085 4.085 7 C -0.170 4.170 8 C -0.153 4.153 9 C -0.054 4.054 10 H 0.111 0.889 11 C 0.302 3.698 12 O -0.443 6.443 13 N -0.367 5.367 14 C 0.020 3.980 15 C 0.023 3.977 16 H 0.089 0.911 17 C -0.010 4.010 18 N -0.337 5.337 19 C -0.396 4.396 20 H 0.091 0.909 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.801 3.199 24 H -0.206 1.206 25 H -0.194 1.194 26 H -0.223 1.223 27 C 0.017 3.983 28 C -0.023 4.023 29 O -0.309 6.309 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.121 0.879 44 H 0.087 0.913 45 H 0.248 0.752 46 H 0.101 0.899 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.032 0.968 50 H 0.061 0.939 51 H 0.015 0.985 52 H 0.086 0.914 53 H 0.127 0.873 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.966 5.132 -24.047 28.278 hybrid contribution 0.113 -0.771 1.630 1.807 sum 14.079 4.361 -22.417 26.828 Atomic orbital electron populations 1.21607 0.95596 1.01328 1.00169 1.21077 0.95831 0.96171 0.97346 1.21801 1.01298 0.95076 1.01986 1.22312 0.97814 0.87818 0.98637 1.62953 1.57063 1.02274 1.02775 1.22911 0.96010 0.95529 0.94042 1.22794 0.99259 0.98985 0.95993 1.22725 1.00749 0.92635 0.99239 1.22468 0.93335 0.98100 0.91497 0.88889 1.20998 0.90493 0.77199 0.81118 1.90675 1.35435 1.45556 1.72591 1.45816 1.15135 1.58256 1.17504 1.21085 0.88150 1.00472 0.88302 1.22532 0.90137 0.95059 0.90013 0.91106 1.21521 0.95510 0.97111 0.86907 1.44338 1.37347 1.36008 1.16034 1.19550 1.29259 1.00396 0.90389 0.90936 1.25852 1.00980 1.00768 0.97079 1.70197 1.54474 1.30652 1.02863 0.85204 0.78088 0.79541 0.77111 1.20633 1.19408 1.22298 1.21322 0.87276 0.95136 0.94596 1.23160 0.96666 0.97724 0.84766 1.87806 1.59424 1.49305 1.34339 0.94894 0.92679 0.93398 0.90427 0.91729 0.91751 0.93414 0.93190 0.93273 0.90961 0.91094 0.89147 0.89706 0.87855 0.91338 0.75176 0.89875 0.92602 0.91045 0.96764 0.93927 0.98470 0.91398 0.87309 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.08 71.98 0.65 -2.07 16 2 C -0.09 -1.41 2.88 -10.79 -0.03 -1.44 16 3 C -0.14 -1.92 9.19 71.98 0.66 -1.26 16 4 C 0.06 1.13 3.92 86.30 0.34 1.47 16 5 N -0.53 -10.25 3.80 -864.98 -3.28 -13.54 16 6 C 0.04 0.57 6.13 86.65 0.53 1.10 16 7 C -0.13 -1.31 6.94 31.82 0.22 -1.09 16 8 C -0.12 -1.53 6.46 32.02 0.21 -1.32 16 9 C 0.06 1.08 2.80 44.64 0.12 1.20 16 10 H 0.09 1.47 7.81 -2.39 -0.02 1.45 16 11 C 0.52 13.68 7.20 87.66 0.63 14.31 16 12 O -0.57 -20.09 16.49 -3.04 -0.05 -20.14 16 13 N -0.71 -17.49 5.46 -463.05 -2.53 -20.02 16 14 C 0.14 4.28 5.34 86.38 0.46 4.74 16 15 C 0.08 2.72 2.80 30.55 0.09 2.81 16 16 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 17 C 0.12 4.82 6.00 86.21 0.52 5.34 16 18 N -0.61 -30.72 3.05 -698.35 -2.13 -32.86 16 19 C -0.27 -14.44 9.65 84.03 0.81 -13.63 16 20 H 0.07 3.79 7.88 -2.92 -0.02 3.77 16 21 C -0.05 -2.83 4.94 84.86 0.42 -2.41 16 22 N -0.94 -54.93 11.15 21.65 0.24 -54.69 16 23 Si 0.97 44.02 29.59 68.60 2.03 46.05 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 27 C 0.14 6.82 5.45 86.35 0.47 7.29 16 28 C 0.05 1.97 6.99 72.08 0.50 2.47 16 29 O -0.39 -13.71 10.33 -148.98 -1.54 -15.25 16 30 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 1.22 7.75 -2.38 -0.02 1.20 16 33 H 0.08 1.12 6.99 -2.39 -0.02 1.11 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.05 1.15 8.08 -2.38 -0.02 1.13 16 38 H 0.05 0.72 7.98 -2.39 -0.02 0.70 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 0.77 6.91 -2.39 -0.02 0.76 16 41 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.07 1.12 8.05 -2.39 -0.02 1.10 16 45 H 0.41 8.13 8.47 -92.71 -0.79 7.35 16 46 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.07 2.81 7.96 -2.39 -0.02 2.79 16 49 H 0.01 0.64 8.13 -2.39 -0.02 0.62 16 50 H 0.25 14.28 8.31 -92.71 -0.77 13.50 16 51 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 52 H 0.07 3.59 6.15 -2.39 -0.01 3.58 16 53 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 54 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -70.14 419.58 -0.59 -70.73 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.07 Total: 22.20 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 6.61 Total: 17.52 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -7.70 Total: -121.10 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.59 Total: -35.39 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -70.14 -0.59 -70.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035423148.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.251 kcal (2) G-P(sol) polarization free energy of solvation -70.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds