Wall clock time and date at job start Tue Mar 31 2020 23:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46785 * 2 1 4 4 C 1.52994 * 109.47648 * 120.00124 * 2 1 3 5 5 N 1.46904 * 109.47128 * 64.99814 * 4 2 1 6 6 C 1.48532 * 110.99526 * 52.60593 * 5 4 2 7 7 C 1.54946 * 103.22578 * 159.72231 * 6 5 4 8 8 C 1.54602 * 102.91742 * 322.58282 * 7 6 5 9 9 C 1.47898 * 111.00066 * 170.00123 * 5 4 2 10 10 H 1.09002 * 110.08175 * 333.60427 * 9 5 4 11 11 C 1.50694 * 109.92001 * 94.80401 * 9 5 4 12 12 O 1.21292 * 119.99638 * 359.04400 * 11 9 5 13 13 N 1.34777 * 120.00268 * 179.04491 * 11 9 5 14 14 C 1.46506 * 119.99646 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.46580 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.51580 * 60.09960 * 15 14 13 17 17 C 1.53718 * 109.43991 * 180.38994 * 15 14 13 18 18 N 1.47152 * 108.15677 * 172.37110 * 17 15 14 19 19 C 1.36939 * 120.97780 * 129.43140 * 18 17 15 20 20 H 1.07996 * 120.00403 * 333.48977 * 19 18 17 21 21 C 1.38817 * 119.99904 * 153.20952 * 19 18 17 22 22 N 1.31622 * 119.99900 * 343.49321 * 21 19 18 23 23 Si 1.86798 * 119.99939 * 163.48507 * 21 19 18 24 24 H 1.48504 * 109.46692 * 90.00440 * 23 21 19 25 25 H 1.48501 * 109.47343 * 210.00162 * 23 21 19 26 26 H 1.48496 * 109.47374 * 330.00633 * 23 21 19 27 27 C 1.47153 * 118.03859 * 309.15347 * 18 17 15 28 28 C 1.53293 * 108.38416 * 50.79133 * 27 18 17 29 29 O 1.42966 * 109.51008 * 299.99791 * 15 14 13 30 30 H 1.09005 * 109.46890 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46852 * 299.99343 * 1 2 3 32 32 H 1.08991 * 109.47491 * 60.00028 * 1 2 3 33 33 H 1.09001 * 109.46852 * 240.00657 * 2 1 3 34 34 H 1.08999 * 109.46992 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47235 * 299.99784 * 3 2 1 36 36 H 1.08993 * 109.47418 * 60.00426 * 3 2 1 37 37 H 1.09003 * 109.47273 * 305.00017 * 4 2 1 38 38 H 1.09002 * 109.47149 * 184.99949 * 4 2 1 39 39 H 1.08999 * 110.67283 * 41.28959 * 6 5 4 40 40 H 1.08998 * 110.81140 * 278.21687 * 6 5 4 41 41 H 1.08999 * 110.72281 * 204.22680 * 7 6 5 42 42 H 1.08996 * 110.72494 * 80.94238 * 7 6 5 43 43 H 1.09001 * 110.30958 * 263.04296 * 8 7 6 44 44 H 1.09001 * 110.38819 * 140.91862 * 8 7 6 45 45 H 0.96993 * 120.00172 * 0.02562 * 13 11 9 46 46 H 1.08995 * 109.47289 * 59.99894 * 14 13 11 47 47 H 1.08994 * 109.47001 * 299.99438 * 14 13 11 48 48 H 1.08996 * 109.84010 * 52.68976 * 17 15 14 49 49 H 1.08999 * 109.74094 * 291.99656 * 17 15 14 50 50 H 0.96998 * 120.00018 * 179.97438 * 22 21 19 51 51 H 1.09004 * 109.67728 * 170.51252 * 27 18 17 52 52 H 1.08997 * 109.68005 * 291.02980 * 27 18 17 53 53 H 1.09003 * 109.51272 * 67.61873 * 28 27 18 54 54 H 1.08993 * 109.51416 * 187.72450 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 1.6515 -2.1367 1.1903 6 6 2.0755 -2.7521 -0.0933 7 6 2.0777 -4.2686 0.2243 8 6 2.6032 -4.3166 1.6775 9 6 2.3242 -2.9156 2.2525 10 1 3.2620 -2.4354 2.5319 11 6 1.4250 -3.0247 3.4568 12 8 0.3348 -2.4931 3.4498 13 7 1.8321 -3.7130 4.5417 14 6 0.9576 -3.8194 5.7123 15 6 1.6538 -4.6461 6.7954 16 1 2.5852 -4.1586 7.0831 17 6 0.7318 -4.7656 8.0195 18 7 1.3449 -5.7121 8.9647 19 6 1.5072 -5.3849 10.2845 20 1 1.6006 -4.3493 10.5766 21 6 1.5459 -6.3838 11.2476 22 7 1.1108 -7.5923 10.9601 23 14 2.2155 -6.0129 12.9516 24 1 1.1089 -5.5537 13.8290 25 1 2.8230 -7.2416 13.5230 26 1 3.2467 -4.9486 12.8574 27 6 1.7729 -7.0231 8.4512 28 6 2.6392 -6.7956 7.2072 29 8 1.9353 -5.9538 6.2908 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6055 -0.2618 2.1369 38 1 3.1264 -0.6443 1.2950 39 1 3.0746 -2.4155 -0.3699 40 1 1.3617 -2.5261 -0.8855 41 1 2.7506 -4.8023 -0.4470 42 1 1.0687 -4.6766 0.1652 43 1 3.6734 -4.5229 1.6862 44 1 2.0678 -5.0741 2.2500 45 1 2.7041 -4.1378 4.5475 46 1 0.0253 -4.3062 5.4263 47 1 0.7437 -2.8227 6.0979 48 1 -0.2460 -5.1359 7.7115 49 1 0.6227 -3.7908 8.4948 50 1 1.1382 -8.2904 11.6330 51 1 2.3535 -7.5438 9.2127 52 1 0.8981 -7.6170 8.1865 53 1 3.5742 -6.3162 7.4973 54 1 2.8530 -7.7531 6.7324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035423149.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:18 Heat of formation + Delta-G solvation = -80.459072 kcal Electronic energy + Delta-G solvation = -30661.905292 eV Core-core repulsion = 26633.172728 eV Total energy + Delta-G solvation = -4028.732564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.32111 -40.20059 -39.16631 -36.51862 -36.48385 -35.68691 -33.38673 -32.49285 -32.03211 -30.50370 -29.08506 -27.95580 -27.05169 -26.31195 -24.98850 -23.82179 -22.80042 -22.52415 -21.61788 -20.72641 -20.40488 -18.92052 -18.28717 -17.61366 -17.24296 -17.10139 -16.88897 -16.19600 -16.06674 -15.91729 -15.56303 -15.48736 -15.09054 -15.05287 -14.87063 -14.55891 -14.47406 -14.23004 -13.97212 -13.75690 -13.64179 -13.22013 -13.15701 -13.00775 -12.77746 -12.69002 -12.52320 -12.47998 -12.41174 -12.20015 -12.12537 -12.08583 -11.88459 -11.82682 -11.69480 -11.58297 -11.39234 -11.33582 -10.81743 -10.73802 -10.53896 -10.05030 -9.30193 -8.76239 -7.92347 -5.40216 1.46005 1.46982 1.57095 1.71621 2.06786 2.47262 2.77316 3.06828 3.22789 3.48539 3.57797 3.64758 3.91209 3.96007 3.99338 4.04360 4.06644 4.14837 4.23969 4.25704 4.33060 4.47853 4.51552 4.54870 4.60533 4.64289 4.71099 4.71774 4.77157 4.78197 4.82618 4.84402 4.89818 4.90714 5.03243 5.05336 5.05718 5.09396 5.16476 5.23569 5.25612 5.28769 5.43941 5.45773 5.52029 5.54619 5.60359 5.87774 6.11078 6.24750 6.32494 6.64942 7.05069 7.34874 7.72844 8.26669 9.13513 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.002088 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.534831 B =13404.429873 C =14095.695059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 C -0.144 4.144 4 C 0.056 3.944 5 N -0.514 5.514 6 C 0.038 3.962 7 C -0.121 4.121 8 C -0.120 4.120 9 C 0.052 3.948 10 H 0.096 0.904 11 C 0.515 3.485 12 O -0.568 6.568 13 N -0.714 5.714 14 C 0.144 3.856 15 C 0.082 3.918 16 H 0.070 0.930 17 C 0.116 3.884 18 N -0.613 5.613 19 C -0.267 4.267 20 H 0.072 0.928 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.972 3.028 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.268 1.268 27 C 0.142 3.858 28 C 0.055 3.945 29 O -0.388 6.388 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.413 0.587 46 H 0.056 0.944 47 H 0.083 0.917 48 H 0.015 0.985 49 H 0.070 0.930 50 H 0.252 0.748 51 H 0.068 0.932 52 H -0.003 1.003 53 H 0.052 0.948 54 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.746 11.225 -25.182 28.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.072 4.072 5 N -0.239 5.239 6 C -0.088 4.088 7 C -0.159 4.159 8 C -0.159 4.159 9 C -0.060 4.060 10 H 0.114 0.886 11 C 0.302 3.698 12 O -0.446 6.446 13 N -0.367 5.367 14 C 0.019 3.981 15 C 0.023 3.977 16 H 0.088 0.912 17 C -0.011 4.011 18 N -0.337 5.337 19 C -0.396 4.396 20 H 0.090 0.910 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.800 3.200 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.192 1.192 27 C 0.017 3.983 28 C -0.023 4.023 29 O -0.307 6.307 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.079 0.921 43 H 0.123 0.877 44 H 0.084 0.916 45 H 0.249 0.751 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.033 0.967 49 H 0.089 0.911 50 H 0.061 0.939 51 H 0.086 0.914 52 H 0.015 0.985 53 H 0.070 0.930 54 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.328 11.421 -25.184 28.607 hybrid contribution 0.839 -0.306 1.822 2.029 sum 8.168 11.115 -23.362 27.130 Atomic orbital electron populations 1.21676 0.95314 1.01482 1.00735 1.21167 0.96119 0.96455 0.97167 1.21797 1.01246 0.95036 1.02099 1.22361 0.97931 0.87916 0.98966 1.64277 1.55414 1.02077 1.02095 1.23296 1.00037 0.93880 0.91623 1.22502 1.01875 0.95936 0.95558 1.22444 1.03386 0.93161 0.96878 1.22353 0.94945 0.97676 0.90992 0.88646 1.21065 0.87445 0.77327 0.84012 1.90672 1.23780 1.47772 1.82329 1.45809 1.21367 1.54686 1.14844 1.21113 0.93276 0.98977 0.84720 1.22694 0.98188 0.83953 0.92901 0.91209 1.21690 0.94052 0.94608 0.90705 1.44370 1.69745 1.14288 1.05319 1.19545 1.43797 0.93131 0.83172 0.91009 1.25864 1.00726 0.96499 1.01594 1.70191 1.49372 1.03451 1.35154 0.85208 0.78232 0.77048 0.79525 1.21298 1.21690 1.19226 1.21328 0.95687 0.86924 0.94395 1.23151 0.93878 0.94749 0.90475 1.87794 1.77676 1.24358 1.40845 0.93258 0.94442 0.92226 0.89928 0.91931 0.91577 0.93322 0.92936 0.93501 0.91857 0.89495 0.88281 0.92114 0.87736 0.91583 0.75128 0.92604 0.89926 0.96678 0.91116 0.93911 0.91387 0.98462 0.92966 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.08 71.98 0.65 -1.76 16 2 C -0.09 -1.32 2.60 -10.79 -0.03 -1.35 16 3 C -0.14 -1.72 9.19 71.98 0.66 -1.06 16 4 C 0.06 1.00 4.42 86.30 0.38 1.38 16 5 N -0.51 -10.14 3.99 -862.43 -3.44 -13.57 16 6 C 0.04 0.52 5.08 86.65 0.44 0.97 16 7 C -0.12 -1.60 7.06 31.80 0.22 -1.37 16 8 C -0.12 -1.77 6.47 31.48 0.20 -1.56 16 9 C 0.05 0.99 2.87 44.31 0.13 1.12 16 10 H 0.10 1.43 7.58 -2.39 -0.02 1.41 16 11 C 0.52 13.93 6.99 87.66 0.61 14.55 16 12 O -0.57 -20.58 16.46 -3.07 -0.05 -20.63 16 13 N -0.71 -17.86 5.31 -463.05 -2.46 -20.32 16 14 C 0.14 4.29 5.37 86.38 0.46 4.76 16 15 C 0.08 2.74 2.88 30.84 0.09 2.83 16 16 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 17 C 0.12 4.84 6.05 86.50 0.52 5.36 16 18 N -0.61 -30.76 3.04 -696.73 -2.12 -32.88 16 19 C -0.27 -14.50 9.65 84.03 0.81 -13.69 16 20 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 21 C -0.05 -2.84 4.95 84.86 0.42 -2.42 16 22 N -0.94 -54.89 11.13 21.65 0.24 -54.65 16 23 Si 0.97 44.07 29.59 68.60 2.03 46.10 16 24 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 C 0.14 6.81 5.44 86.35 0.47 7.28 16 28 C 0.06 1.98 6.99 72.08 0.50 2.48 16 29 O -0.39 -13.52 10.13 -148.98 -1.51 -15.03 16 30 H 0.05 1.05 7.75 -2.38 -0.02 1.04 16 31 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 1.01 6.52 -2.39 -0.02 0.99 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 0.68 7.82 -2.39 -0.02 0.66 16 39 H 0.06 0.65 8.01 -2.39 -0.02 0.63 16 40 H 0.09 1.16 7.56 -2.39 -0.02 1.14 16 41 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 1.20 7.62 -2.39 -0.02 1.19 16 45 H 0.41 8.45 8.31 -92.71 -0.77 7.68 16 46 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.07 2.80 7.96 -2.39 -0.02 2.78 16 50 H 0.25 14.26 8.31 -92.71 -0.77 13.48 16 51 H 0.07 3.59 6.15 -2.39 -0.01 3.58 16 52 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 53 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 54 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -70.39 417.82 -0.66 -71.06 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.09 Total: 22.41 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 6.56 Total: 17.52 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -7.78 Total: -121.42 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -1.56 Total: -35.66 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -70.39 -0.66 -71.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035423149.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.400 kcal (2) G-P(sol) polarization free energy of solvation -70.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds