Wall clock time and date at job start Tue Mar 31 2020 23:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 N 1.46901 * 109.46769 * 65.00032 * 4 2 1 6 6 C 1.47439 * 110.99961 * 69.87863 * 5 4 2 7 7 C 1.54322 * 107.23490 * 123.25626 * 6 5 4 8 8 C 1.55135 * 103.02006 * 22.28319 * 7 6 5 9 9 H 1.08997 * 110.99015 * 82.43462 * 8 7 6 10 10 C 1.50696 * 110.99057 * 206.22070 * 8 7 6 11 11 O 1.21279 * 120.00511 * 118.54442 * 10 8 7 12 12 N 1.34778 * 120.00028 * 298.54367 * 10 8 7 13 13 C 1.46495 * 119.99813 * 0.02562 * 12 10 8 14 14 C 1.46497 * 120.00056 * 179.97438 * 12 10 8 15 15 H 1.08997 * 110.88766 * 0.70697 * 14 12 10 16 16 C 1.54919 * 111.00232 * 124.58049 * 14 12 10 17 17 N 1.47429 * 104.82949 * 155.08091 * 16 14 12 18 18 C 1.36939 * 125.64396 * 155.83800 * 17 16 14 19 19 H 1.08000 * 119.99875 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99883 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00017 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99965 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47094 * 60.00048 * 22 20 18 24 24 H 1.48503 * 109.46822 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47275 * 299.99603 * 22 20 18 26 26 C 1.47023 * 108.70615 * 335.87584 * 17 16 14 27 27 C 1.54369 * 107.28651 * 1.08847 * 26 17 16 28 28 H 1.08998 * 110.70827 * 263.79545 * 27 26 17 29 29 O 1.42904 * 110.75365 * 140.50887 * 27 26 17 30 30 C 1.47853 * 110.99956 * 190.71917 * 5 4 2 31 31 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 32 32 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 34 34 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 35 35 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 37 37 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 38 38 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 39 39 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 40 40 H 1.09003 * 109.89080 * 242.65955 * 6 5 4 41 41 H 1.09003 * 109.89174 * 3.69037 * 6 5 4 42 42 H 1.09003 * 110.70500 * 140.67082 * 7 6 5 43 43 H 1.09004 * 110.70538 * 263.72555 * 7 6 5 44 44 H 1.08999 * 109.47347 * 90.00134 * 13 12 10 45 45 H 1.09004 * 109.47075 * 210.00150 * 13 12 10 46 46 H 1.09004 * 109.47186 * 329.99927 * 13 12 10 47 47 H 1.08989 * 110.36924 * 273.92204 * 16 14 12 48 48 H 1.09001 * 110.36577 * 36.13991 * 16 14 12 49 49 H 0.96998 * 120.00617 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.88070 * 120.47290 * 26 17 16 51 51 H 1.08998 * 109.88127 * 241.48259 * 26 17 16 52 52 H 0.96695 * 114.00316 * 66.48380 * 29 27 26 53 53 H 1.09002 * 110.36766 * 332.46788 * 30 5 4 54 54 H 1.08997 * 110.37443 * 94.80755 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6513 -2.1366 1.1904 6 6 2.4042 -2.8481 0.1412 7 6 3.1299 -4.0288 0.8200 8 6 2.2965 -4.2571 2.1084 9 1 1.4146 -4.8630 1.9006 10 6 3.1367 -4.8848 3.1906 11 8 3.3160 -4.2976 4.2364 12 7 3.6888 -6.0989 2.9962 13 6 3.4726 -6.8080 1.7327 14 6 4.5059 -6.7089 4.0480 15 1 4.5588 -6.0618 4.9235 16 6 3.9678 -8.1115 4.4260 17 7 5.1341 -8.8283 4.9732 18 6 5.0855 -9.8849 5.8430 19 1 4.1319 -10.2591 6.1852 20 6 6.2618 -10.4741 6.2856 21 7 7.4238 -10.0177 5.8689 22 14 6.1955 -11.9149 7.4727 23 1 5.4453 -13.0351 6.8501 24 1 7.5766 -12.3599 7.7886 25 1 5.5120 -11.4956 8.7225 26 6 6.3581 -8.2204 4.4310 27 6 5.9252 -7.0501 3.5221 28 1 5.8845 -7.3663 2.4798 29 8 6.8045 -5.9347 3.6795 30 6 1.8982 -2.8081 2.4843 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6765 1.9564 0.8900 38 1 3.1263 -0.6442 1.2952 39 1 1.6053 -0.2617 2.1370 40 1 1.7180 -3.2221 -0.6187 41 1 3.1310 -2.1756 -0.3145 42 1 3.1058 -4.9133 0.1834 43 1 4.1575 -3.7600 1.0650 44 1 4.2580 -6.5394 1.0262 45 1 3.4962 -7.8832 1.9108 46 1 2.5026 -6.5292 1.3208 47 1 3.1861 -8.0271 5.1808 48 1 3.5869 -8.6226 3.5419 49 1 8.2459 -10.4296 6.1779 50 1 6.9784 -7.8465 5.2455 51 1 6.9129 -8.9580 3.8512 52 1 7.7048 -6.0961 3.3659 53 1 2.7122 -2.3169 3.0174 54 1 0.9923 -2.8087 3.0904 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047407442.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:30 Heat of formation + Delta-G solvation = -74.954618 kcal Electronic energy + Delta-G solvation = -31089.811587 eV Core-core repulsion = 27061.317715 eV Total energy + Delta-G solvation = -4028.493873 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.64705 -40.11300 -39.09386 -36.76836 -36.53958 -36.29854 -33.91449 -32.31120 -30.39454 -30.01442 -29.01044 -27.90045 -27.85177 -26.74794 -26.05328 -23.62424 -22.36226 -22.30579 -21.45436 -20.51309 -20.00869 -19.03696 -18.75055 -17.99188 -17.51313 -17.09747 -16.69293 -16.38998 -16.09769 -15.83140 -15.48253 -15.26934 -15.02225 -14.58600 -14.54905 -14.44185 -14.20760 -14.17272 -13.89478 -13.68897 -13.59448 -13.21050 -13.17851 -13.06845 -13.00026 -12.82097 -12.72071 -12.69715 -12.59504 -12.44551 -12.19692 -12.11130 -11.89354 -11.78808 -11.68653 -11.58062 -11.54752 -11.38734 -11.06059 -10.78519 -10.73957 -9.70993 -9.30533 -8.97201 -7.89685 -5.27754 1.44946 1.48741 1.54546 1.54998 1.83686 2.46663 2.92292 3.11237 3.31235 3.47599 3.51095 3.57911 3.73018 3.83401 3.96384 4.03552 4.05499 4.11455 4.15807 4.29448 4.30809 4.33076 4.43195 4.44296 4.51227 4.56788 4.63331 4.70744 4.76247 4.77421 4.83006 4.85482 4.89495 4.93897 4.95283 5.02748 5.08753 5.10327 5.15466 5.24288 5.30970 5.35069 5.40428 5.48588 5.50256 5.57043 5.63650 5.95358 6.10032 6.10999 6.38829 6.81414 7.01885 7.12275 7.67313 8.29939 9.19774 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.031238 B = 0.002147 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.127129 B =13038.831148 C =13228.895323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 C -0.147 4.147 4 C 0.053 3.947 5 N -0.524 5.524 6 C 0.043 3.957 7 C -0.126 4.126 8 C -0.105 4.105 9 H 0.137 0.863 10 C 0.518 3.482 11 O -0.590 6.590 12 N -0.595 5.595 13 C 0.062 3.938 14 C 0.145 3.855 15 H 0.072 0.928 16 C 0.133 3.867 17 N -0.621 5.621 18 C -0.247 4.247 19 H 0.086 0.914 20 C -0.064 4.064 21 N -0.950 5.950 22 Si 0.983 3.017 23 H -0.272 1.272 24 H -0.294 1.294 25 H -0.280 1.280 26 C 0.164 3.836 27 C 0.086 3.914 28 H 0.088 0.912 29 O -0.573 6.573 30 C 0.065 3.935 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.027 0.973 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.115 0.885 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.108 0.892 47 H 0.040 0.960 48 H 0.056 0.944 49 H 0.249 0.751 50 H 0.014 0.986 51 H 0.026 0.974 52 H 0.392 0.608 53 H 0.031 0.969 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.022 16.136 -19.360 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.205 4.205 4 C -0.075 4.075 5 N -0.248 5.248 6 C -0.084 4.084 7 C -0.164 4.164 8 C -0.127 4.127 9 H 0.155 0.845 10 C 0.307 3.693 11 O -0.470 6.470 12 N -0.326 5.326 13 C -0.079 4.079 14 C 0.039 3.961 15 H 0.090 0.910 16 C 0.007 3.993 17 N -0.349 5.349 18 C -0.375 4.375 19 H 0.104 0.896 20 C -0.257 4.257 21 N -0.598 5.598 22 Si 0.810 3.190 23 H -0.197 1.197 24 H -0.220 1.220 25 H -0.206 1.206 26 C 0.038 3.962 27 C 0.025 3.975 28 H 0.106 0.894 29 O -0.380 6.380 30 C -0.063 4.063 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.133 0.867 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.126 0.874 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.058 0.942 50 H 0.033 0.967 51 H 0.044 0.956 52 H 0.241 0.759 53 H 0.050 0.950 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.860 16.577 -18.606 28.042 hybrid contribution 2.038 -1.045 1.390 2.679 sum -10.822 15.532 -17.217 25.588 Atomic orbital electron populations 1.21672 0.94307 1.02111 1.01012 1.21081 0.96891 0.95669 0.96901 1.21823 1.00798 0.95566 1.02280 1.22400 0.97345 0.88368 0.99360 1.63687 1.55140 1.02278 1.03701 1.22953 0.96292 0.94395 0.94762 1.22903 0.97889 1.01134 0.94485 1.22386 0.99270 0.97311 0.93687 0.84524 1.21128 0.79400 0.80406 0.88353 1.90684 1.62692 1.63125 1.30516 1.47726 1.49541 1.18165 1.17151 1.22305 1.03842 0.98169 0.83620 1.21857 0.89066 0.94283 0.90890 0.91010 1.21905 0.90339 0.89579 0.97467 1.44498 1.01428 1.35972 1.52969 1.19430 0.93437 1.05929 1.18732 0.89612 1.25703 0.94990 1.02682 1.02374 1.70140 0.96911 1.44141 1.48654 0.85097 0.76323 0.78944 0.78620 1.19723 1.21973 1.20644 1.21587 0.88677 0.91671 0.94250 1.23310 0.89522 0.86121 0.98525 0.89411 1.86473 1.25653 1.38201 1.87669 1.22725 1.00148 0.91656 0.91809 0.92587 0.92170 0.93614 0.90818 0.92962 0.91546 0.92818 0.95518 0.91584 0.88191 0.91994 0.86717 0.92770 0.90677 0.90413 0.87404 0.94189 0.92610 0.94205 0.96726 0.95628 0.75870 0.95014 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.08 71.98 0.65 -1.05 16 2 C -0.09 -1.12 2.89 -10.79 -0.03 -1.15 16 3 C -0.15 -1.67 9.19 71.98 0.66 -1.01 16 4 C 0.05 0.90 3.93 86.30 0.34 1.23 16 5 N -0.52 -9.03 4.61 -885.51 -4.08 -13.12 16 6 C 0.04 0.58 6.14 86.65 0.53 1.11 16 7 C -0.13 -1.87 5.38 31.77 0.17 -1.69 16 8 C -0.10 -2.09 2.44 -10.16 -0.02 -2.11 16 9 H 0.14 2.04 7.57 -2.39 -0.02 2.03 16 10 C 0.52 15.73 7.08 87.66 0.62 16.35 16 11 O -0.59 -24.21 15.18 -3.03 -0.05 -24.26 16 12 N -0.59 -17.17 2.91 -814.83 -2.37 -19.54 16 13 C 0.06 1.12 7.73 127.77 0.99 2.10 16 14 C 0.14 5.59 3.18 46.39 0.15 5.73 16 15 H 0.07 3.41 7.01 -2.39 -0.02 3.39 16 16 C 0.13 5.48 6.80 86.86 0.59 6.07 16 17 N -0.62 -32.02 3.39 -691.88 -2.35 -34.37 16 18 C -0.25 -13.82 10.28 84.03 0.86 -12.96 16 19 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 20 C -0.06 -3.65 5.49 84.86 0.47 -3.19 16 21 N -0.95 -56.76 10.31 21.65 0.22 -56.54 16 22 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 C 0.16 8.10 5.16 86.74 0.45 8.54 16 27 C 0.09 3.26 3.91 31.80 0.12 3.38 16 28 H 0.09 2.79 7.16 -2.39 -0.02 2.78 16 29 O -0.57 -21.40 13.39 -148.98 -1.99 -23.39 16 30 C 0.06 1.44 5.75 86.77 0.50 1.94 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 0.86 7.75 -2.39 -0.02 0.84 16 33 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.90 7.04 -2.39 -0.02 0.88 16 35 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.03 0.49 7.96 -2.39 -0.02 0.47 16 39 H 0.07 1.20 8.07 -2.39 -0.02 1.18 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 0.80 6.94 -2.39 -0.02 0.79 16 42 H 0.11 1.05 6.38 -2.39 -0.02 1.03 16 43 H 0.05 1.04 8.04 -2.38 -0.02 1.02 16 44 H 0.07 1.12 7.61 -2.39 -0.02 1.10 16 45 H 0.08 1.51 6.11 -2.38 -0.01 1.49 16 46 H 0.11 1.21 5.95 -2.38 -0.01 1.20 16 47 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.06 2.01 6.09 -2.39 -0.01 1.99 16 49 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 50 H 0.01 0.84 7.30 -2.39 -0.02 0.82 16 51 H 0.03 1.36 7.50 -2.39 -0.02 1.34 16 52 H 0.39 11.09 9.12 -74.06 -0.68 10.41 16 53 H 0.03 0.88 7.18 -2.39 -0.02 0.87 16 54 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -75.88 407.14 -1.34 -77.22 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.21 Total: 23.05 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 7.05 Total: 23.30 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -8.58 Total: -123.56 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -2.04 Total: -47.65 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -75.88 -1.34 -77.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047407442.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.267 kcal (2) G-P(sol) polarization free energy of solvation -75.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds