Wall clock time and date at job start Tue Mar 31 2020 23:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46973 * 2 1 4 4 C 1.52999 * 109.47009 * 119.99926 * 2 1 3 5 5 N 1.46904 * 109.47330 * 67.42557 * 4 2 1 6 6 C 1.47846 * 110.99817 * 75.26959 * 5 4 2 7 7 C 1.55107 * 104.90355 * 146.24416 * 6 5 4 8 8 C 1.55141 * 101.56090 * 323.15552 * 7 6 5 9 9 H 1.09000 * 110.70849 * 276.97369 * 8 7 6 10 10 C 1.50696 * 110.70939 * 153.90821 * 8 7 6 11 11 O 1.21286 * 119.99923 * 243.81356 * 10 8 7 12 12 N 1.34776 * 120.00244 * 63.80671 * 10 8 7 13 13 C 1.46501 * 119.99828 * 0.02562 * 12 10 8 14 14 C 1.46499 * 120.00328 * 180.02562 * 12 10 8 15 15 H 1.09000 * 110.78020 * 3.23993 * 14 12 10 16 16 C 1.54323 * 110.72087 * 126.47780 * 14 12 10 17 17 N 1.47020 * 107.27038 * 140.55657 * 16 14 12 18 18 C 1.36939 * 125.64638 * 181.09596 * 17 16 14 19 19 H 1.07998 * 119.99886 * 164.79061 * 18 17 16 20 20 C 1.38818 * 120.00090 * 344.78526 * 18 17 16 21 21 N 1.31611 * 119.99984 * 156.35997 * 20 18 17 22 22 Si 1.86800 * 119.99760 * 336.35911 * 20 18 17 23 23 H 1.48506 * 109.46891 * 85.87026 * 22 20 18 24 24 H 1.48498 * 109.46946 * 205.86093 * 22 20 18 25 25 H 1.48490 * 109.47374 * 325.86395 * 22 20 18 26 26 C 1.47414 * 108.70442 * 1.05742 * 17 16 14 27 27 C 1.54911 * 104.83457 * 335.87083 * 26 17 16 28 28 H 1.08994 * 111.00925 * 278.89900 * 27 26 17 29 29 O 1.42896 * 111.00501 * 155.08075 * 27 26 17 30 30 C 1.47443 * 111.00030 * 196.11213 * 5 4 2 31 31 H 1.09002 * 109.47127 * 300.00055 * 1 2 3 32 32 H 1.08996 * 109.46882 * 60.00552 * 1 2 3 33 33 H 1.09004 * 109.47072 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47525 * 240.00110 * 2 1 3 35 35 H 1.08998 * 109.47172 * 295.38441 * 3 2 1 36 36 H 1.09000 * 109.46774 * 55.38768 * 3 2 1 37 37 H 1.09004 * 109.46953 * 175.37948 * 3 2 1 38 38 H 1.09000 * 109.47166 * 307.42133 * 4 2 1 39 39 H 1.09004 * 109.47264 * 187.42879 * 4 2 1 40 40 H 1.08998 * 110.37055 * 265.19429 * 6 5 4 41 41 H 1.09003 * 110.37258 * 27.53254 * 6 5 4 42 42 H 1.09007 * 111.14676 * 205.05003 * 7 6 5 43 43 H 1.09002 * 110.92733 * 81.16525 * 7 6 5 44 44 H 1.08993 * 109.47356 * 270.00338 * 13 12 10 45 45 H 1.09004 * 109.46737 * 30.00301 * 13 12 10 46 46 H 1.08998 * 109.47033 * 149.99935 * 13 12 10 47 47 H 1.08999 * 109.88359 * 21.13398 * 16 14 12 48 48 H 1.08999 * 110.01175 * 260.04757 * 16 14 12 49 49 H 0.97002 * 120.00120 * 180.02562 * 21 20 18 50 50 H 1.09000 * 110.36920 * 217.03042 * 26 17 16 51 51 H 1.09008 * 110.46158 * 94.75753 * 26 17 16 52 52 H 0.96696 * 114.00229 * 61.45667 * 29 27 26 53 53 H 1.09004 * 109.88366 * 117.33485 * 30 5 4 54 54 H 1.08997 * 109.88800 * 356.14842 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.7020 -2.1483 1.1632 6 6 2.5895 -2.8463 0.2089 7 6 2.7694 -4.2694 0.7991 8 6 2.8153 -3.9713 2.3209 9 1 3.8180 -3.6706 2.6247 10 6 2.3575 -5.1690 3.1126 11 8 1.3538 -5.1006 3.7901 12 7 3.0632 -6.3164 3.0677 13 6 4.2758 -6.3990 2.2497 14 6 2.6178 -7.4809 3.8369 15 1 1.6750 -7.2728 4.3427 16 6 2.4868 -8.7195 2.9257 17 7 2.9817 -9.8758 3.6871 18 6 3.0545 -11.1631 3.2259 19 1 3.6496 -11.8932 3.7543 20 6 2.3634 -11.5297 2.0791 21 7 2.7630 -12.5660 1.3730 22 14 0.8663 -10.5521 1.5383 23 1 1.3013 -9.3967 0.7129 24 1 -0.0304 -11.4231 0.7368 25 1 0.1381 -10.0595 2.7349 26 6 3.3872 -9.4197 5.0290 27 6 3.7042 -7.9132 4.8569 28 1 4.7043 -7.7685 4.4482 29 8 3.5531 -7.2134 6.0935 30 6 1.8229 -2.8003 2.4800 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.7458 1.9319 -0.9284 36 1 1.6107 1.9796 0.8458 37 1 3.1269 1.4436 0.0828 38 1 1.5723 -0.2898 2.1343 39 1 3.1219 -0.6076 1.3182 40 1 2.1228 -2.8987 -0.7748 41 1 3.5527 -2.3399 0.1463 42 1 3.7026 -4.7202 0.4612 43 1 1.9187 -4.9041 0.5511 44 1 4.0147 -6.7336 1.2458 45 1 4.7445 -5.4164 2.1948 46 1 4.9702 -7.1082 2.7001 47 1 3.0874 -8.5833 2.0264 48 1 1.4426 -8.8740 2.6540 49 1 2.2803 -12.8219 0.5715 50 1 4.2747 -9.9586 5.3608 51 1 2.5728 -9.5571 5.7405 52 1 4.1466 -7.5186 6.7933 53 1 0.8510 -3.1784 2.7972 54 1 2.2035 -2.0886 3.2126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047407443.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:34 Heat of formation + Delta-G solvation = -67.657572 kcal Electronic energy + Delta-G solvation = -31430.278172 eV Core-core repulsion = 27402.100723 eV Total energy + Delta-G solvation = -4028.177449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.75490 -40.25611 -39.16166 -36.93992 -36.55039 -36.34520 -34.15201 -32.50610 -30.76408 -30.07963 -29.48579 -27.95002 -27.92320 -26.70292 -25.91021 -23.72576 -22.62488 -22.33565 -21.58589 -20.71592 -20.11162 -19.20786 -18.92084 -18.07511 -17.73622 -17.11909 -16.92375 -16.43291 -16.07118 -15.96857 -15.72473 -15.36588 -15.14768 -14.72978 -14.67484 -14.52169 -14.43963 -14.27513 -13.94052 -13.82903 -13.79540 -13.53968 -13.44065 -13.19625 -13.02989 -13.00019 -12.87014 -12.66243 -12.57514 -12.47971 -12.28609 -12.15553 -11.92367 -11.86834 -11.77665 -11.56115 -11.49309 -11.36491 -11.17170 -10.83851 -10.82738 -9.74682 -9.24662 -9.22268 -8.25387 -5.50276 1.19868 1.31747 1.38097 1.49105 1.76816 2.31275 2.79890 2.93837 3.06316 3.31869 3.37721 3.44850 3.55212 3.76524 3.81776 3.92457 3.96865 4.03163 4.10490 4.14560 4.26711 4.30374 4.32547 4.33864 4.34725 4.50393 4.55449 4.63417 4.67997 4.73424 4.76397 4.80961 4.83293 4.85826 4.87257 4.92183 4.97793 5.02570 5.06496 5.10035 5.13241 5.15598 5.31171 5.38402 5.48390 5.52112 5.54319 5.98566 6.02687 6.15639 6.30043 6.62477 6.83637 7.05029 7.43740 7.96386 8.93874 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.002809 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.134265 B = 9964.713255 C =10921.836938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 C -0.144 4.144 4 C 0.055 3.945 5 N -0.540 5.540 6 C 0.049 3.951 7 C -0.118 4.118 8 C -0.117 4.117 9 H 0.134 0.866 10 C 0.520 3.480 11 O -0.582 6.582 12 N -0.600 5.600 13 C 0.065 3.935 14 C 0.143 3.857 15 H 0.084 0.916 16 C 0.113 3.887 17 N -0.619 5.619 18 C -0.231 4.231 19 H 0.078 0.922 20 C -0.024 4.024 21 N -0.943 5.943 22 Si 0.935 3.065 23 H -0.275 1.275 24 H -0.305 1.305 25 H -0.289 1.289 26 C 0.101 3.899 27 C 0.102 3.898 28 H 0.097 0.903 29 O -0.566 6.566 30 C 0.062 3.938 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.111 0.889 46 H 0.079 0.921 47 H 0.053 0.947 48 H 0.010 0.990 49 H 0.264 0.736 50 H 0.073 0.927 51 H 0.031 0.969 52 H 0.399 0.601 53 H 0.062 0.938 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.817 27.503 -1.402 28.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.073 4.073 5 N -0.264 5.264 6 C -0.078 4.078 7 C -0.156 4.156 8 C -0.139 4.139 9 H 0.151 0.849 10 C 0.310 3.690 11 O -0.462 6.462 12 N -0.331 5.331 13 C -0.076 4.076 14 C 0.038 3.962 15 H 0.102 0.898 16 C -0.012 4.012 17 N -0.347 5.347 18 C -0.359 4.359 19 H 0.096 0.904 20 C -0.219 4.219 21 N -0.590 5.590 22 Si 0.767 3.233 23 H -0.202 1.202 24 H -0.234 1.234 25 H -0.217 1.217 26 C -0.024 4.024 27 C 0.041 3.959 28 H 0.114 0.886 29 O -0.374 6.374 30 C -0.066 4.066 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.129 0.871 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.098 0.902 47 H 0.071 0.929 48 H 0.027 0.973 49 H 0.074 0.926 50 H 0.091 0.909 51 H 0.049 0.951 52 H 0.250 0.750 53 H 0.080 0.920 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.329 27.669 -1.707 28.229 hybrid contribution -0.232 -0.794 0.367 0.905 sum 5.097 26.874 -1.341 27.386 Atomic orbital electron populations 1.21702 0.95353 1.01409 1.01011 1.21055 0.96077 0.96049 0.97489 1.21802 1.01165 0.95051 1.02151 1.22481 0.98792 0.87116 0.98883 1.63535 1.52937 1.03151 1.06827 1.23140 0.95843 0.92219 0.96648 1.22884 1.03709 0.98102 0.90950 1.22510 1.02407 0.92375 0.96600 0.84879 1.21073 0.82495 0.84570 0.80903 1.90668 1.27546 1.84060 1.43882 1.47776 1.27639 1.10653 1.47072 1.22216 0.85431 1.05068 0.94921 1.21672 0.98722 0.84601 0.91208 0.89777 1.21897 0.96747 0.86872 0.95719 1.44664 1.75699 1.03218 1.11136 1.18651 1.23522 0.85801 1.07907 0.90411 1.25324 1.00977 0.97976 0.97667 1.69917 1.40927 1.31097 1.17009 0.86167 0.82554 0.77469 0.77072 1.20157 1.23355 1.21706 1.22469 0.99135 0.94009 0.86807 1.23115 0.98102 0.89769 0.84934 0.88586 1.86503 1.66332 1.61967 1.22551 1.22608 0.98740 0.93996 0.91289 0.93372 0.92812 0.93359 0.91262 0.92103 0.92642 0.92129 0.91358 0.93315 0.89797 0.91025 0.87066 0.92675 0.91802 0.87094 0.90211 0.92916 0.97284 0.92637 0.90888 0.95076 0.75023 0.91996 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.09 71.98 0.65 -1.46 16 2 C -0.09 -1.15 2.98 -10.79 -0.03 -1.18 16 3 C -0.14 -1.44 9.19 71.98 0.66 -0.78 16 4 C 0.06 0.79 4.06 86.30 0.35 1.14 16 5 N -0.54 -10.02 4.68 -885.10 -4.14 -14.16 16 6 C 0.05 0.72 5.99 86.84 0.52 1.24 16 7 C -0.12 -2.05 5.63 32.05 0.18 -1.87 16 8 C -0.12 -2.35 2.36 -10.36 -0.02 -2.37 16 9 H 0.13 1.84 7.40 -2.39 -0.02 1.82 16 10 C 0.52 15.78 7.06 87.66 0.62 16.40 16 11 O -0.58 -23.20 14.81 -3.05 -0.05 -23.24 16 12 N -0.60 -17.62 2.89 -815.96 -2.35 -19.98 16 13 C 0.06 1.31 7.63 127.77 0.98 2.29 16 14 C 0.14 5.26 3.09 46.18 0.14 5.40 16 15 H 0.08 3.63 7.01 -2.39 -0.02 3.61 16 16 C 0.11 4.94 4.67 86.73 0.41 5.35 16 17 N -0.62 -29.13 3.24 -692.00 -2.24 -31.38 16 18 C -0.23 -12.87 10.58 84.03 0.89 -11.98 16 19 H 0.08 4.57 8.06 -2.91 -0.02 4.55 16 20 C -0.02 -1.39 5.44 84.86 0.46 -0.93 16 21 N -0.94 -58.05 13.97 21.65 0.30 -57.75 16 22 Si 0.94 48.59 24.32 68.60 1.67 50.26 16 23 H -0.28 -13.53 6.92 99.48 0.69 -12.84 16 24 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 25 H -0.29 -15.38 6.68 99.48 0.66 -14.72 16 26 C 0.10 3.74 6.96 86.86 0.60 4.35 16 27 C 0.10 3.12 3.97 31.99 0.13 3.25 16 28 H 0.10 2.52 6.39 -2.39 -0.02 2.50 16 29 O -0.57 -15.78 13.47 -148.98 -2.01 -17.79 16 30 C 0.06 1.36 6.25 86.65 0.54 1.90 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.93 7.83 -2.38 -0.02 0.91 16 34 H 0.07 0.92 7.55 -2.39 -0.02 0.90 16 35 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 1.05 7.84 -2.39 -0.02 1.03 16 39 H 0.05 0.58 7.66 -2.38 -0.02 0.57 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 0.77 7.52 -2.39 -0.02 0.75 16 42 H 0.11 1.34 6.56 -2.38 -0.02 1.33 16 43 H 0.05 1.28 8.04 -2.39 -0.02 1.26 16 44 H 0.06 1.30 7.44 -2.39 -0.02 1.29 16 45 H 0.11 1.35 6.00 -2.38 -0.01 1.33 16 46 H 0.08 1.62 6.40 -2.39 -0.02 1.60 16 47 H 0.05 2.26 6.63 -2.39 -0.02 2.25 16 48 H 0.01 0.48 3.50 -2.39 -0.01 0.47 16 49 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 50 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 51 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 52 H 0.40 6.84 9.11 -74.06 -0.67 6.16 16 53 H 0.06 1.84 6.84 -2.39 -0.02 1.82 16 54 H 0.07 1.31 7.46 -2.39 -0.02 1.29 16 Total: -1.00 -76.36 401.75 -1.59 -77.96 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.15 Total: 15.32 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 7.08 Total: 20.75 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -8.44 Total: -123.27 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -2.05 Total: -41.03 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.67 Total: 50.26 kcal Total: -76.36 -1.59 -77.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047407443.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.301 kcal (2) G-P(sol) polarization free energy of solvation -76.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds