Wall clock time and date at job start Tue Mar 31 2020 23:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47115 * 2 1 4 4 C 1.52994 * 109.46887 * 119.99946 * 2 1 3 5 5 N 1.46900 * 109.47190 * 64.04396 * 4 2 1 6 6 C 1.47439 * 111.00504 * 75.97426 * 5 4 2 7 7 C 1.54317 * 107.23464 * 123.25449 * 6 5 4 8 8 C 1.55140 * 103.01950 * 22.28813 * 7 6 5 9 9 C 1.47849 * 110.99918 * 196.81934 * 5 4 2 10 10 H 1.09002 * 110.37482 * 332.46489 * 9 5 4 11 11 C 1.50703 * 110.37185 * 94.80450 * 9 5 4 12 12 O 1.21278 * 120.00302 * 21.72866 * 11 9 5 13 13 N 1.34780 * 119.99856 * 201.72825 * 11 9 5 14 14 C 1.46499 * 120.00118 * 175.22171 * 13 11 9 15 15 C 1.46501 * 120.00098 * 355.22061 * 13 11 9 16 16 H 1.09001 * 110.64165 * 3.14279 * 15 13 11 17 17 C 1.54319 * 110.72020 * 126.47498 * 15 13 11 18 18 N 1.47031 * 107.27060 * 140.55821 * 17 15 13 19 19 C 1.36934 * 125.64885 * 181.02480 * 18 17 15 20 20 H 1.07998 * 120.00037 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00027 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99671 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00092 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47012 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47088 * 120.00105 * 23 21 19 26 26 H 1.48501 * 109.46820 * 240.00346 * 23 21 19 27 27 C 1.47427 * 108.70000 * 1.05982 * 18 17 15 28 28 C 1.54907 * 104.83533 * 335.87401 * 27 18 17 29 29 H 1.08998 * 111.03720 * 278.92056 * 28 27 18 30 30 O 1.42900 * 111.00752 * 155.08087 * 28 27 18 31 31 H 1.08998 * 109.47257 * 300.00005 * 1 2 3 32 32 H 1.09000 * 109.47188 * 59.99855 * 1 2 3 33 33 H 1.08999 * 109.47499 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47257 * 239.99995 * 2 1 3 35 35 H 1.08995 * 109.46771 * 183.81404 * 3 2 1 36 36 H 1.09002 * 109.47046 * 303.81346 * 3 2 1 37 37 H 1.08997 * 109.47085 * 63.81280 * 3 2 1 38 38 H 1.09002 * 109.47613 * 304.04029 * 4 2 1 39 39 H 1.09004 * 109.47190 * 184.04216 * 4 2 1 40 40 H 1.08994 * 109.89124 * 242.66381 * 6 5 4 41 41 H 1.09003 * 109.88543 * 3.85751 * 6 5 4 42 42 H 1.09000 * 110.70607 * 140.66672 * 7 6 5 43 43 H 1.09003 * 110.71212 * 263.90656 * 7 6 5 44 44 H 1.09005 * 110.99125 * 82.43372 * 8 7 6 45 45 H 1.08996 * 110.99627 * 206.25548 * 8 7 6 46 46 H 1.09001 * 109.47105 * 84.79541 * 14 13 11 47 47 H 1.09001 * 109.47300 * 204.79160 * 14 13 11 48 48 H 1.08994 * 109.47047 * 324.79792 * 14 13 11 49 49 H 1.08994 * 109.88614 * 259.97630 * 17 15 13 50 50 H 1.09003 * 109.88261 * 21.14418 * 17 15 13 51 51 H 0.96997 * 120.00248 * 179.97438 * 22 21 19 52 52 H 1.08993 * 110.36764 * 217.03024 * 27 18 17 53 53 H 1.09002 * 110.36322 * 94.71002 * 27 18 17 54 54 H 0.96703 * 113.99571 * 67.79906 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6316 -2.1315 1.2014 6 6 2.4660 -2.8914 0.2526 7 6 3.1020 -4.0587 1.0364 8 6 2.1468 -4.2283 2.2471 9 6 1.7427 -2.7608 2.5347 10 1 2.5122 -2.2641 3.1258 11 6 0.4171 -2.7121 3.2498 12 8 -0.6091 -2.5817 2.6168 13 7 0.3719 -2.8136 4.5931 14 6 -0.9040 -2.6616 5.2967 15 6 1.5988 -3.0758 5.3495 16 1 2.4615 -3.1064 4.6839 17 6 1.7950 -2.0177 6.4556 18 7 2.3092 -2.7170 7.6423 19 6 2.5968 -2.1363 8.8486 20 1 2.4482 -1.0755 8.9864 21 6 3.0793 -2.9111 9.8945 22 7 3.2609 -4.2038 9.7264 23 14 3.4710 -2.1190 11.5403 24 1 3.1817 -0.6641 11.4708 25 1 2.6353 -2.7394 12.5995 26 1 4.9068 -2.3240 11.8590 27 6 2.4646 -4.1467 7.3182 28 6 1.4772 -4.3985 6.1514 29 1 0.4617 -4.5389 6.5216 30 8 1.8908 -5.5158 5.3623 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1278 1.4432 -0.0684 36 1 1.6219 1.9757 -0.8539 37 1 1.7335 1.9362 0.9222 38 1 1.6187 -0.2509 2.1378 39 1 3.1276 -0.6589 1.2862 40 1 1.8474 -3.2810 -0.5557 41 1 3.2470 -2.2477 -0.1522 42 1 3.1208 -4.9647 0.4306 43 1 4.1057 -3.7968 1.3712 44 1 1.2769 -4.8271 1.9772 45 1 2.6694 -4.6634 3.0989 46 1 -1.4287 -3.6170 5.3082 47 1 -0.7180 -2.3369 6.3204 48 1 -1.5148 -1.9179 4.7849 49 1 2.5138 -1.2670 6.1272 50 1 0.8414 -1.5439 6.6887 51 1 3.5984 -4.7452 10.4570 52 1 2.2001 -4.7617 8.1783 53 1 3.4867 -4.3550 7.0018 54 1 1.8323 -6.3648 5.8216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047439879.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:58 Heat of formation + Delta-G solvation = -65.027032 kcal Electronic energy + Delta-G solvation = -32309.251370 eV Core-core repulsion = 28281.187990 eV Total energy + Delta-G solvation = -4028.063380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.64831 -39.99857 -39.00224 -36.66655 -36.53931 -36.15302 -33.67813 -32.04913 -31.09415 -30.27677 -28.86844 -27.92809 -27.77832 -26.40244 -26.17978 -23.20084 -22.44041 -22.27301 -21.95054 -20.50850 -19.83135 -19.01905 -18.89922 -17.82393 -17.40759 -16.86690 -16.79166 -16.38762 -15.99477 -15.65989 -15.61794 -15.35096 -15.02158 -14.79312 -14.48718 -14.35553 -14.20150 -13.91869 -13.79438 -13.73389 -13.55983 -13.19602 -13.13878 -13.05695 -12.98888 -12.77519 -12.74504 -12.74045 -12.61089 -12.46408 -12.08028 -12.00105 -11.91233 -11.79985 -11.69176 -11.57214 -11.48240 -11.44953 -10.99104 -10.76051 -10.70259 -9.69343 -9.24581 -8.94363 -7.80121 -5.26021 1.48694 1.49508 1.57627 1.59279 1.83591 2.47250 2.89741 3.11223 3.31598 3.41171 3.62311 3.70633 3.75865 3.79700 3.86110 3.98471 4.02762 4.13621 4.16123 4.24254 4.31629 4.34767 4.46406 4.51958 4.54638 4.55785 4.58585 4.66318 4.75129 4.77077 4.84160 4.85120 4.89852 4.93365 4.97535 5.01365 5.07780 5.10962 5.13751 5.26384 5.31054 5.38761 5.44040 5.47024 5.48504 5.56967 5.71756 5.89129 6.12285 6.22782 6.36776 6.86408 7.06544 7.19122 7.71181 8.32411 9.21060 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014634 B = 0.003131 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.877564 B = 8939.551242 C = 9494.530726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 C -0.144 4.144 4 C 0.056 3.944 5 N -0.520 5.520 6 C 0.045 3.955 7 C -0.132 4.132 8 C -0.109 4.109 9 C 0.057 3.943 10 H 0.075 0.925 11 C 0.527 3.473 12 O -0.553 6.553 13 N -0.602 5.602 14 C 0.085 3.915 15 C 0.147 3.853 16 H 0.109 0.891 17 C 0.126 3.874 18 N -0.617 5.617 19 C -0.238 4.238 20 H 0.083 0.917 21 C -0.060 4.060 22 N -0.945 5.945 23 Si 0.978 3.022 24 H -0.268 1.268 25 H -0.291 1.291 26 H -0.293 1.293 27 C 0.136 3.864 28 C 0.087 3.913 29 H 0.064 0.936 30 O -0.562 6.562 31 H 0.033 0.967 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.056 0.944 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.034 0.966 50 H 0.043 0.957 51 H 0.249 0.751 52 H 0.083 0.917 53 H 0.000 1.000 54 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 2.655 -18.315 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.101 4.101 3 C -0.201 4.201 4 C -0.072 4.072 5 N -0.244 5.244 6 C -0.082 4.082 7 C -0.170 4.170 8 C -0.147 4.147 9 C -0.055 4.055 10 H 0.093 0.907 11 C 0.315 3.685 12 O -0.430 6.430 13 N -0.335 5.335 14 C -0.057 4.057 15 C 0.042 3.958 16 H 0.127 0.873 17 C 0.000 4.000 18 N -0.345 5.345 19 C -0.367 4.367 20 H 0.101 0.899 21 C -0.253 4.253 22 N -0.594 5.594 23 Si 0.807 3.193 24 H -0.192 1.192 25 H -0.218 1.218 26 H -0.220 1.220 27 C 0.010 3.990 28 C 0.025 3.975 29 H 0.081 0.919 30 O -0.368 6.368 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.089 0.911 49 H 0.052 0.948 50 H 0.061 0.939 51 H 0.058 0.942 52 H 0.100 0.900 53 H 0.018 0.982 54 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.087 3.163 -19.091 19.463 hybrid contribution 0.881 -0.145 2.155 2.333 sum -1.205 3.018 -16.936 17.245 Atomic orbital electron populations 1.21612 0.95378 1.01445 1.00278 1.21030 0.95973 0.96004 0.97100 1.21802 1.01284 0.95033 1.02031 1.22419 0.98030 0.87877 0.98879 1.63035 1.54220 1.02314 1.04856 1.22925 0.95174 0.94849 0.95225 1.22796 0.98522 0.99741 0.95986 1.22593 0.99887 0.92367 0.99891 1.22479 0.93052 0.98229 0.91748 0.90722 1.20730 0.91576 0.75037 0.81166 1.90623 1.36599 1.49721 1.66021 1.47852 1.08658 1.70985 1.06005 1.21634 0.84643 1.01867 0.97556 1.22031 0.87225 0.93473 0.93065 0.87275 1.21700 0.97694 0.94099 0.86549 1.44486 1.76724 1.04702 1.08575 1.19450 1.36299 0.93269 0.87690 0.89891 1.25560 1.01705 0.96409 1.01585 1.69973 1.52345 1.05260 1.31857 0.85015 0.76890 0.77989 0.79443 1.19237 1.21838 1.22030 1.22316 0.94456 0.86333 0.95856 1.23325 0.97052 0.86242 0.90864 0.91853 1.86317 1.89715 1.18014 1.42796 0.94807 0.92459 0.93296 0.90497 0.91928 0.91548 0.93319 0.93081 0.93293 0.90259 0.90832 0.88775 0.90288 0.91677 0.89398 0.92539 0.90272 0.91095 0.94815 0.93934 0.94152 0.89955 0.98207 0.75646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.07 71.98 0.65 -2.28 16 2 C -0.08 -1.57 2.97 -10.80 -0.03 -1.60 16 3 C -0.14 -2.25 9.19 71.98 0.66 -1.59 16 4 C 0.06 1.24 3.99 86.30 0.34 1.58 16 5 N -0.52 -12.74 3.80 -864.99 -3.29 -16.03 16 6 C 0.05 0.85 6.26 86.65 0.54 1.39 16 7 C -0.13 -2.36 6.94 31.77 0.22 -2.14 16 8 C -0.11 -2.63 6.32 31.98 0.20 -2.43 16 9 C 0.06 1.53 1.74 44.64 0.08 1.60 16 10 H 0.08 2.00 6.29 -2.39 -0.02 1.98 16 11 C 0.53 17.15 6.93 87.66 0.61 17.76 16 12 O -0.55 -21.12 16.34 -3.02 -0.05 -21.17 16 13 N -0.60 -19.01 2.89 -815.96 -2.35 -21.36 16 14 C 0.09 2.52 9.11 127.77 1.16 3.68 16 15 C 0.15 4.88 2.91 46.18 0.13 5.01 16 16 H 0.11 3.51 5.04 -2.39 -0.01 3.50 16 17 C 0.13 4.85 6.77 86.73 0.59 5.44 16 18 N -0.62 -29.54 3.39 -691.98 -2.35 -31.88 16 19 C -0.24 -12.57 10.27 84.04 0.86 -11.71 16 20 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 21 C -0.06 -3.19 5.49 84.86 0.47 -2.72 16 22 N -0.94 -52.85 10.09 21.65 0.22 -52.63 16 23 Si 0.98 43.51 29.55 68.60 2.03 45.54 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 27 C 0.14 6.17 5.62 86.85 0.49 6.66 16 28 C 0.09 3.03 4.00 31.99 0.13 3.16 16 29 H 0.06 2.23 7.34 -2.39 -0.02 2.21 16 30 O -0.56 -16.89 12.72 -148.98 -1.90 -18.79 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.34 7.72 -2.39 -0.02 1.32 16 34 H 0.08 1.34 7.51 -2.39 -0.02 1.32 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.05 1.31 7.99 -2.39 -0.02 1.29 16 39 H 0.05 0.95 7.76 -2.39 -0.02 0.94 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.14 7.21 -2.39 -0.02 1.12 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.06 1.75 8.05 -2.38 -0.02 1.73 16 45 H 0.09 2.24 6.93 -2.39 -0.02 2.23 16 46 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.08 2.34 6.16 -2.39 -0.01 2.32 16 48 H 0.07 2.07 7.66 -2.39 -0.02 2.05 16 49 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.04 1.61 6.00 -2.39 -0.01 1.60 16 51 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 52 H 0.08 4.23 5.88 -2.39 -0.01 4.22 16 53 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 54 H 0.39 9.12 9.12 -74.05 -0.68 8.45 16 Total: -1.00 -64.81 410.04 -0.38 -65.18 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.21 Total: 29.33 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 7.11 Total: 21.81 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -7.77 Total: -121.91 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -1.94 Total: -39.96 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -64.81 -0.38 -65.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047439879.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.158 kcal (2) G-P(sol) polarization free energy of solvation -64.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds