Wall clock time and date at job start Tue Mar 31 2020 23:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 C 1.52997 * 109.47012 * 120.00463 * 2 1 3 5 5 N 1.46904 * 109.47030 * 175.35890 * 4 2 1 6 6 C 1.47840 * 111.00419 * 163.27877 * 5 4 2 7 7 C 1.54905 * 104.80115 * 146.36067 * 6 5 4 8 8 C 1.55401 * 101.73902 * 323.02355 * 7 6 5 9 9 C 1.47443 * 110.99786 * 284.12233 * 5 4 2 10 10 H 1.09004 * 109.89096 * 117.17507 * 9 5 4 11 11 C 1.50703 * 109.89174 * 356.14782 * 9 5 4 12 12 O 1.21291 * 119.99688 * 294.90345 * 11 9 5 13 13 N 1.34773 * 120.00163 * 114.89495 * 11 9 5 14 14 C 1.46502 * 119.99989 * 4.88440 * 13 11 9 15 15 C 1.46503 * 119.99894 * 184.87607 * 13 11 9 16 16 H 1.09004 * 110.88693 * 357.58068 * 15 13 11 17 17 C 1.54909 * 111.00191 * 121.45851 * 15 13 11 18 18 N 1.47420 * 104.83278 * 155.08329 * 17 15 13 19 19 C 1.36943 * 125.65002 * 155.83694 * 18 17 15 20 20 H 1.07997 * 119.99653 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99834 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00736 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99671 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47490 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47063 * 119.99843 * 23 21 19 26 26 H 1.48503 * 109.47238 * 239.99626 * 23 21 19 27 27 C 1.47026 * 108.70287 * 335.87244 * 18 17 15 28 28 C 1.54322 * 107.27053 * 1.05852 * 27 18 17 29 29 H 1.09000 * 110.71996 * 263.82733 * 28 27 18 30 30 O 1.42897 * 110.71998 * 140.55603 * 28 27 18 31 31 H 1.08996 * 109.47064 * 299.99302 * 1 2 3 32 32 H 1.08997 * 109.47325 * 59.99826 * 1 2 3 33 33 H 1.09004 * 109.46944 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46903 * 240.00240 * 2 1 3 35 35 H 1.09002 * 109.47278 * 65.01413 * 3 2 1 36 36 H 1.09002 * 109.47114 * 185.01259 * 3 2 1 37 37 H 1.09002 * 109.47094 * 305.01500 * 3 2 1 38 38 H 1.08994 * 109.47757 * 55.35669 * 4 2 1 39 39 H 1.09000 * 109.47039 * 295.35057 * 4 2 1 40 40 H 1.09002 * 110.37522 * 265.19260 * 6 5 4 41 41 H 1.09011 * 110.37085 * 27.42024 * 6 5 4 42 42 H 1.08997 * 110.98815 * 81.01854 * 7 6 5 43 43 H 1.08992 * 110.99411 * 204.80564 * 7 6 5 44 44 H 1.09002 * 110.67459 * 277.17333 * 8 7 6 45 45 H 1.09000 * 110.84596 * 153.86076 * 8 7 6 46 46 H 1.09005 * 109.46818 * 84.70823 * 14 13 11 47 47 H 1.08994 * 109.47120 * 324.70845 * 14 13 11 48 48 H 1.08993 * 109.46966 * 204.70737 * 14 13 11 49 49 H 1.09002 * 110.37032 * 273.92725 * 17 15 13 50 50 H 1.09002 * 110.36892 * 36.13775 * 17 15 13 51 51 H 0.96999 * 120.00502 * 179.97438 * 22 21 19 52 52 H 1.09006 * 109.88063 * 120.47447 * 27 18 17 53 53 H 1.08997 * 109.87995 * 241.48104 * 27 18 17 54 54 H 0.96701 * 114.00224 * 66.47298 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5047 -0.8192 1.1944 6 6 4.0648 -1.1362 2.5254 7 6 5.3047 -2.0176 2.2333 8 6 4.8154 -2.8604 1.0228 9 6 3.9294 -1.8645 0.2453 10 1 4.5004 -1.4170 -0.5682 11 6 2.7216 -2.5763 -0.3076 12 8 2.0164 -3.2346 0.4276 13 7 2.4249 -2.4813 -1.6188 14 6 3.3335 -1.7759 -2.5261 15 6 1.1940 -3.0836 -2.1369 16 1 0.6536 -3.6044 -1.3464 17 6 0.2966 -2.0177 -2.8137 18 7 -0.5258 -2.7729 -3.7763 19 6 -1.7467 -2.3848 -4.2601 20 1 -2.1839 -1.4517 -3.9366 21 6 -2.4222 -3.1905 -5.1663 22 7 -1.8893 -4.3274 -5.5610 23 14 -4.0880 -2.6614 -5.8256 24 1 -4.4637 -1.3540 -5.2299 25 1 -4.0166 -2.5303 -7.3031 26 1 -5.1082 -3.6794 -5.4677 27 6 0.1815 -4.0123 -4.1303 28 6 1.4974 -4.0350 -3.3244 29 1 2.3234 -3.6524 -3.9238 30 8 1.7802 -5.3548 -2.8553 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.7518 1.9298 0.9315 36 1 3.1263 1.4438 -0.0898 37 1 1.6051 1.9816 -0.8417 38 1 1.6104 -1.7221 1.2917 39 1 1.7462 -0.1617 2.1372 40 1 4.3616 -0.2222 3.0398 41 1 3.3373 -1.6872 3.1217 42 1 6.1631 -1.4049 1.9582 43 1 5.5397 -2.6556 3.0852 44 1 4.2294 -3.7151 1.3607 45 1 5.6570 -3.1861 0.4115 46 1 4.1188 -2.4564 -2.8554 47 1 3.7811 -0.9290 -2.0061 48 1 2.7766 -1.4176 -3.3918 49 1 -0.3377 -1.5301 -2.0734 50 1 0.9090 -1.2800 -3.3323 51 1 -2.3615 -4.8907 -6.1939 52 1 -0.4294 -4.8759 -3.8671 53 1 0.3980 -4.0234 -5.1985 54 1 1.9765 -5.9886 -3.5587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047439880.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:02 Heat of formation + Delta-G solvation = -53.403333 kcal Electronic energy + Delta-G solvation = -33260.821120 eV Core-core repulsion = 29233.261781 eV Total energy + Delta-G solvation = -4027.559339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.25141 -40.09250 -38.46712 -36.83618 -36.57231 -36.36032 -33.88487 -32.05344 -31.14318 -29.91564 -28.94813 -27.92387 -27.79167 -26.46870 -26.20384 -23.69206 -22.36329 -22.23427 -21.49878 -20.77429 -19.79730 -19.04683 -18.89371 -18.07803 -17.45349 -17.24115 -16.94522 -16.31916 -16.11737 -15.78403 -15.45857 -15.20871 -15.05083 -14.65691 -14.53813 -14.51132 -14.13868 -14.01347 -13.75007 -13.69809 -13.55906 -13.28446 -13.12945 -13.07328 -13.01356 -12.79246 -12.76590 -12.65025 -12.51996 -12.35333 -12.06501 -12.04510 -11.89313 -11.71858 -11.70448 -11.61598 -11.51445 -11.37843 -11.11699 -10.88458 -10.78992 -9.68077 -9.24103 -8.95354 -7.89239 -5.26834 1.43149 1.45319 1.46205 1.56134 1.85305 2.46545 2.95007 3.10935 3.31777 3.39392 3.57094 3.66247 3.71934 3.84872 3.98108 4.03479 4.05184 4.11254 4.16276 4.24970 4.31994 4.34231 4.43008 4.50133 4.54449 4.56767 4.64815 4.74098 4.75930 4.78458 4.85691 4.89076 4.92136 4.94225 5.01203 5.04064 5.06313 5.10174 5.19044 5.28489 5.31994 5.35821 5.41099 5.44320 5.49992 5.53263 5.64175 5.87890 5.95792 6.11603 6.36189 6.81965 7.02754 7.09730 7.68255 8.30891 9.20567 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016457 B = 0.003666 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.967228 B = 7635.915588 C = 8724.492842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C -0.124 4.124 4 C 0.016 3.984 5 N -0.491 5.491 6 C 0.033 3.967 7 C -0.114 4.114 8 C -0.131 4.131 9 C 0.051 3.949 10 H 0.130 0.870 11 C 0.509 3.491 12 O -0.578 6.578 13 N -0.592 5.592 14 C 0.058 3.942 15 C 0.149 3.851 16 H 0.070 0.930 17 C 0.136 3.864 18 N -0.620 5.620 19 C -0.243 4.243 20 H 0.085 0.915 21 C -0.061 4.061 22 N -0.949 5.949 23 Si 0.978 3.022 24 H -0.265 1.265 25 H -0.288 1.288 26 H -0.295 1.295 27 C 0.164 3.836 28 C 0.084 3.916 29 H 0.087 0.913 30 O -0.572 6.572 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.032 0.968 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.101 0.899 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.079 0.921 49 H 0.045 0.955 50 H 0.048 0.952 51 H 0.248 0.752 52 H 0.015 0.985 53 H 0.025 0.975 54 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.848 9.243 11.442 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.181 4.181 4 C -0.112 4.112 5 N -0.215 5.215 6 C -0.094 4.094 7 C -0.151 4.151 8 C -0.169 4.169 9 C -0.060 4.060 10 H 0.148 0.852 11 C 0.298 3.702 12 O -0.459 6.459 13 N -0.323 5.323 14 C -0.083 4.083 15 C 0.044 3.956 16 H 0.088 0.912 17 C 0.010 3.990 18 N -0.347 5.347 19 C -0.371 4.371 20 H 0.103 0.897 21 C -0.255 4.255 22 N -0.598 5.598 23 Si 0.807 3.193 24 H -0.189 1.189 25 H -0.215 1.215 26 H -0.222 1.222 27 C 0.038 3.962 28 C 0.024 3.976 29 H 0.105 0.895 30 O -0.379 6.379 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.050 0.950 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.068 0.932 45 H 0.120 0.880 46 H 0.097 0.903 47 H 0.121 0.879 48 H 0.098 0.902 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.057 0.943 52 H 0.033 0.967 53 H 0.043 0.957 54 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 18.427 9.615 12.095 24.047 hybrid contribution -1.999 -1.506 -0.917 2.666 sum 16.428 8.109 11.178 21.461 Atomic orbital electron populations 1.21767 0.96142 1.00093 1.01891 1.21253 0.94582 0.98123 0.97826 1.21613 1.01791 0.93603 1.01092 1.22974 0.88031 1.01092 0.99068 1.64232 1.09515 1.40075 1.07726 1.23235 0.96002 1.00241 0.89941 1.22716 0.97632 0.97530 0.97254 1.22841 0.99056 0.97103 0.97927 1.22975 0.92699 0.92164 0.98150 0.85228 1.21547 0.87439 0.79782 0.81411 1.90598 1.53999 1.42723 1.58531 1.47847 1.21820 1.54415 1.08248 1.22247 0.93645 0.97852 0.94549 1.21806 0.85713 0.93212 0.94909 0.91210 1.21918 0.92501 0.93247 0.91324 1.44500 1.19096 1.21025 1.50110 1.19473 0.93868 1.03943 1.19852 0.89730 1.25638 1.02480 0.97016 1.00334 1.70150 1.39428 1.13555 1.36654 0.85012 0.79058 0.77628 0.77637 1.18928 1.21459 1.22234 1.21579 0.89854 0.88991 0.95810 1.23325 0.96546 0.83250 0.94528 0.89484 1.86472 1.92530 1.20430 1.38476 0.92033 0.92496 0.95635 0.90884 0.93024 0.91137 0.93198 0.93114 0.90794 0.87952 0.94959 0.88241 0.89504 0.93160 0.88019 0.90266 0.87906 0.90215 0.93653 0.93487 0.94275 0.96692 0.95718 0.75881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 8.20 71.98 0.59 -3.40 16 2 C -0.10 -2.48 2.64 -10.80 -0.03 -2.51 16 3 C -0.12 -2.46 9.02 71.98 0.65 -1.81 16 4 C 0.02 0.42 3.74 86.30 0.32 0.74 16 5 N -0.49 -10.27 4.65 -864.89 -4.02 -14.29 16 6 C 0.03 0.58 6.64 86.77 0.58 1.16 16 7 C -0.11 -1.55 7.08 32.07 0.23 -1.32 16 8 C -0.13 -2.44 6.45 31.87 0.21 -2.23 16 9 C 0.05 1.08 3.19 44.51 0.14 1.22 16 10 H 0.13 2.10 5.54 -2.39 -0.01 2.08 16 11 C 0.51 15.38 3.94 87.66 0.35 15.73 16 12 O -0.58 -23.01 13.28 -3.06 -0.04 -23.05 16 13 N -0.59 -17.29 1.79 -814.82 -1.46 -18.75 16 14 C 0.06 1.15 7.82 127.77 1.00 2.15 16 15 C 0.15 5.74 3.17 46.38 0.15 5.89 16 16 H 0.07 3.31 7.02 -2.38 -0.02 3.30 16 17 C 0.14 5.60 6.79 86.86 0.59 6.19 16 18 N -0.62 -31.87 3.39 -691.99 -2.35 -34.22 16 19 C -0.24 -13.58 10.28 84.03 0.86 -12.72 16 20 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 21 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 22 N -0.95 -56.65 10.31 21.65 0.22 -56.43 16 23 Si 0.98 45.71 29.55 68.60 2.03 47.74 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 27 C 0.16 8.09 5.15 86.73 0.45 8.53 16 28 C 0.08 3.21 3.89 31.78 0.12 3.33 16 29 H 0.09 2.81 7.08 -2.39 -0.02 2.79 16 30 O -0.57 -21.37 13.39 -148.98 -1.99 -23.36 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.60 8.12 -2.39 -0.02 1.58 16 33 H 0.02 0.86 7.49 -2.38 -0.02 0.84 16 34 H 0.07 1.95 4.18 -2.38 -0.01 1.94 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.28 7.88 -2.39 -0.02 1.27 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 1.74 4.60 -4.22 -0.02 1.72 16 39 H 0.07 1.79 7.99 -2.39 -0.02 1.77 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.03 0.68 7.81 -2.38 -0.02 0.66 16 42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.05 1.26 7.38 -2.39 -0.02 1.25 16 45 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.10 1.50 5.89 -2.39 -0.01 1.49 16 48 H 0.08 1.67 6.33 -2.39 -0.02 1.66 16 49 H 0.05 1.92 6.35 -2.39 -0.02 1.90 16 50 H 0.05 1.75 6.33 -2.39 -0.02 1.73 16 51 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 52 H 0.01 0.86 7.30 -2.38 -0.02 0.84 16 53 H 0.02 1.31 7.50 -2.39 -0.02 1.29 16 54 H 0.39 11.12 9.12 -74.06 -0.68 10.44 16 Total: -1.00 -74.34 396.34 -0.73 -75.07 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.21 Total: 29.37 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 6.67 Total: 17.93 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -7.60 Total: -123.68 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -2.04 Total: -46.41 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -74.34 -0.73 -75.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047439880.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.666 kcal (2) G-P(sol) polarization free energy of solvation -74.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds