Wall clock time and date at job start Tue Mar 31 2020 23:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46999 * 2 1 4 4 C 1.53000 * 109.47213 * 119.99611 * 2 1 3 5 5 N 1.46902 * 109.46993 * 63.76241 * 4 2 1 6 6 C 1.47906 * 111.00078 * 277.99330 * 5 4 2 7 7 C 1.53997 * 107.05744 * 145.84048 * 6 5 4 8 8 C 1.54595 * 105.14230 * 358.77980 * 7 6 5 9 9 H 1.09002 * 110.72673 * 96.57069 * 8 7 6 10 10 C 1.50692 * 110.72402 * 219.68471 * 8 7 6 11 11 O 1.21284 * 120.00466 * 116.14379 * 10 8 7 12 12 N 1.34779 * 119.99885 * 296.14579 * 10 8 7 13 13 C 1.46504 * 119.99896 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.46814 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.68071 * 58.39446 * 14 13 12 16 16 C 1.53295 * 109.68179 * 178.90775 * 14 13 12 17 17 O 1.42961 * 109.22324 * 172.02595 * 16 14 13 18 18 C 1.42957 * 114.16541 * 297.41921 * 17 16 14 19 19 C 1.53295 * 109.22328 * 62.58442 * 18 17 16 20 20 N 1.47147 * 109.68212 * 297.83360 * 14 13 12 21 21 C 1.36941 * 120.98436 * 9.72573 * 20 14 13 22 22 H 1.08005 * 119.99182 * 325.81564 * 21 20 14 23 23 C 1.38802 * 120.00515 * 145.81584 * 21 20 14 24 24 N 1.31622 * 119.99915 * 354.00893 * 23 21 20 25 25 Si 1.86799 * 120.00248 * 174.00774 * 23 21 20 26 26 H 1.48508 * 109.46730 * 90.00394 * 25 23 21 27 27 H 1.48496 * 109.47402 * 209.99955 * 25 23 21 28 28 H 1.48498 * 109.47176 * 330.00513 * 25 23 21 29 29 C 1.48731 * 111.04331 * 35.56763 * 5 4 2 30 30 H 1.09001 * 109.47574 * 288.88317 * 1 2 3 31 31 H 1.09002 * 109.47303 * 48.88046 * 1 2 3 32 32 H 1.08998 * 109.47359 * 168.87953 * 1 2 3 33 33 H 1.08995 * 109.47156 * 240.00043 * 2 1 3 34 34 H 1.09001 * 109.46975 * 55.19817 * 3 2 1 35 35 H 1.08995 * 109.47053 * 175.19727 * 3 2 1 36 36 H 1.08999 * 109.46811 * 295.20124 * 3 2 1 37 37 H 1.09004 * 109.47330 * 303.76462 * 4 2 1 38 38 H 1.08997 * 109.47296 * 183.76451 * 4 2 1 39 39 H 1.08998 * 109.91746 * 26.49109 * 6 5 4 40 40 H 1.08995 * 109.91665 * 265.19969 * 6 5 4 41 41 H 1.09002 * 110.31032 * 239.85738 * 7 6 5 42 42 H 1.09002 * 110.38588 * 117.73672 * 7 6 5 43 43 H 0.96997 * 119.99862 * 359.72272 * 12 10 8 44 44 H 1.08997 * 109.46978 * 299.99245 * 13 12 10 45 45 H 1.08998 * 109.47517 * 59.99609 * 13 12 10 46 46 H 1.08997 * 109.51238 * 291.95210 * 16 14 13 47 47 H 1.09001 * 109.50860 * 52.09894 * 16 14 13 48 48 H 1.09007 * 109.51491 * 182.50652 * 18 17 16 49 49 H 1.09006 * 109.51656 * 302.60532 * 18 17 16 50 50 H 1.08988 * 109.68497 * 67.41844 * 19 18 17 51 51 H 1.09004 * 109.68016 * 187.94207 * 19 18 17 52 52 H 0.96999 * 120.00301 * 179.97438 * 24 23 21 53 53 H 1.09004 * 110.83508 * 81.96604 * 29 5 4 54 54 H 1.09004 * 110.58566 * 318.77446 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6259 -2.1299 1.2048 6 6 0.2331 -2.2882 1.6767 7 6 -0.3935 -3.4330 0.8592 8 6 0.7157 -3.8855 -0.1180 9 1 1.2506 -4.7485 0.2786 10 6 0.1373 -4.1961 -1.4744 11 8 0.4611 -3.5342 -2.4378 12 7 -0.7399 -5.2094 -1.6170 13 6 -1.3017 -5.5117 -2.9358 14 6 -2.2615 -6.6977 -2.8215 15 1 -3.0535 -6.4619 -2.1107 16 6 -2.8732 -7.0010 -4.1940 17 8 -3.6199 -8.2178 -4.1181 18 6 -2.8338 -9.3676 -3.7961 19 6 -2.2202 -9.1856 -2.4032 20 7 -1.5258 -7.8886 -2.3679 21 6 -0.2331 -7.7929 -1.9263 22 1 0.4371 -7.0717 -2.3703 23 6 0.2158 -8.6226 -0.9081 24 7 -0.6290 -9.4181 -0.2867 25 14 2.0187 -8.6105 -0.4197 26 1 2.2360 -7.5993 0.6460 27 1 2.4038 -9.9527 0.0856 28 1 2.8497 -8.2696 -1.6023 29 6 1.6464 -2.6488 -0.1889 30 1 -0.3634 0.3326 0.9723 31 1 -0.3634 0.6758 -0.7742 32 1 -0.3634 -1.0083 -0.1982 33 1 1.8933 -0.5138 -0.8899 34 1 1.6080 1.9806 0.8439 35 1 3.1265 1.4438 0.0860 36 1 1.7485 1.9309 -0.9299 37 1 1.6226 -0.2477 2.1380 38 1 3.1278 -0.6631 1.2837 39 1 -0.3226 -1.3655 1.5099 40 1 0.2268 -2.5421 2.7366 41 1 -1.2608 -3.0723 0.3062 42 1 -0.6789 -4.2557 1.5147 43 1 -0.9957 -5.7412 -0.8473 44 1 -1.8419 -4.6415 -3.3087 45 1 -0.4957 -5.7621 -3.6255 46 1 -3.5348 -6.1855 -4.4860 47 1 -2.0778 -7.1073 -4.9316 48 1 -3.4671 -10.2549 -3.8018 49 1 -2.0388 -9.4832 -4.5328 50 1 -3.0079 -9.2009 -1.6501 51 1 -1.5094 -9.9885 -2.2074 52 1 -0.3153 -9.9982 0.4246 53 1 2.6554 -2.9428 -0.4783 54 1 1.2477 -1.9063 -0.8802 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050954348.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:53 Heat of formation + Delta-G solvation = -61.577560 kcal Electronic energy + Delta-G solvation = -32093.250279 eV Core-core repulsion = 28065.336479 eV Total energy + Delta-G solvation = -4027.913800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.53071 -40.35062 -39.57605 -36.93373 -36.06922 -35.29430 -33.35886 -32.44388 -31.84906 -30.23593 -28.99023 -28.21813 -27.37276 -26.08994 -25.23574 -23.87983 -22.99413 -22.06141 -21.43930 -20.96491 -20.38656 -18.83487 -18.09011 -17.53545 -17.42542 -17.08719 -16.61710 -16.27148 -16.11586 -16.03911 -15.72465 -15.63139 -15.34004 -15.05866 -14.88404 -14.61796 -14.41751 -14.16693 -13.97628 -13.55332 -13.30325 -13.13863 -13.03754 -12.91127 -12.76448 -12.74394 -12.63502 -12.51336 -12.44674 -12.20002 -12.18017 -12.14818 -12.00194 -11.88957 -11.82030 -11.49254 -11.37329 -11.30107 -10.86475 -10.57902 -10.55067 -9.86121 -9.18325 -8.57518 -7.87445 -5.41887 1.40367 1.46364 1.51027 1.69542 2.29754 2.45040 3.02119 3.10907 3.29738 3.44481 3.54084 3.63359 3.84292 3.89270 4.01119 4.04144 4.11891 4.18939 4.25582 4.32016 4.36080 4.46688 4.47857 4.55596 4.60700 4.64480 4.64723 4.66361 4.71757 4.74747 4.75427 4.81650 4.87870 4.95524 4.98808 5.00552 5.01077 5.05368 5.12322 5.19164 5.25136 5.30672 5.37044 5.38998 5.58031 5.65116 5.69049 5.88205 6.11168 6.30098 6.39090 6.69995 7.11823 7.32123 7.75885 8.33721 9.16629 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.003437 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.893085 B = 8144.106601 C = 9400.123786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.137 4.137 3 C -0.138 4.138 4 C 0.051 3.949 5 N -0.524 5.524 6 C 0.023 3.977 7 C -0.114 4.114 8 C -0.115 4.115 9 H 0.094 0.906 10 C 0.518 3.482 11 O -0.588 6.588 12 N -0.693 5.693 13 C 0.142 3.858 14 C 0.127 3.873 15 H 0.038 0.962 16 C 0.057 3.943 17 O -0.397 6.397 18 C 0.046 3.954 19 C 0.150 3.850 20 N -0.605 5.605 21 C -0.242 4.242 22 H 0.063 0.937 23 C -0.025 4.025 24 N -0.924 5.924 25 Si 0.939 3.061 26 H -0.277 1.277 27 H -0.295 1.295 28 H -0.284 1.284 29 C 0.048 3.952 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.411 0.589 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.117 0.883 47 H 0.048 0.952 48 H 0.104 0.896 49 H 0.042 0.958 50 H 0.007 0.993 51 H 0.065 0.935 52 H 0.250 0.750 53 H 0.071 0.929 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 15.771 2.026 15.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.196 4.196 4 C -0.077 4.077 5 N -0.247 5.247 6 C -0.104 4.104 7 C -0.153 4.153 8 C -0.137 4.137 9 H 0.112 0.888 10 C 0.305 3.695 11 O -0.470 6.470 12 N -0.342 5.342 13 C 0.018 3.982 14 C 0.021 3.979 15 H 0.055 0.945 16 C -0.022 4.022 17 O -0.316 6.316 18 C -0.032 4.032 19 C 0.025 3.975 20 N -0.331 5.331 21 C -0.372 4.372 22 H 0.080 0.920 23 C -0.222 4.222 24 N -0.570 5.570 25 Si 0.768 3.232 26 H -0.204 1.204 27 H -0.221 1.221 28 H -0.209 1.209 29 C -0.079 4.079 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.247 0.753 44 H 0.097 0.903 45 H 0.066 0.934 46 H 0.135 0.865 47 H 0.066 0.934 48 H 0.122 0.878 49 H 0.061 0.939 50 H 0.025 0.975 51 H 0.083 0.917 52 H 0.060 0.940 53 H 0.089 0.911 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.242 15.811 1.802 15.916 hybrid contribution 0.770 -0.598 0.208 0.996 sum 0.528 15.214 2.010 15.355 Atomic orbital electron populations 1.22133 0.95294 1.01395 1.02202 1.21812 0.96358 0.97884 0.99597 1.21725 1.01241 0.94442 1.02144 1.22458 1.01190 0.86450 0.97573 1.64984 1.22609 1.18625 1.18520 1.23278 0.88656 0.98488 1.00009 1.22351 0.96518 0.99444 0.96958 1.22164 0.98474 1.00539 0.92529 0.88764 1.20650 0.78529 0.79552 0.90773 1.90609 1.62084 1.52190 1.42164 1.45990 1.44298 1.32023 1.11896 1.21097 0.95891 0.96188 0.85015 1.21542 0.93276 0.87363 0.95716 0.94475 1.22992 0.96187 0.87394 0.95592 1.87803 1.36106 1.16613 1.91057 1.23226 0.94984 0.88244 0.96770 1.21228 0.94699 0.89079 0.92518 1.44247 1.11218 1.01614 1.75999 1.19140 0.87155 1.19220 1.11650 0.91985 1.25639 0.99779 1.00140 0.96621 1.70063 1.34007 1.27634 1.25247 0.85718 0.82364 0.76865 0.78213 1.20358 1.22132 1.20946 1.23247 0.98923 0.94737 0.91023 0.91105 0.92611 0.93439 0.91778 0.91675 0.92161 0.92776 0.89516 0.90370 0.90346 0.89523 0.90940 0.89797 0.75282 0.90283 0.93437 0.86483 0.93408 0.87802 0.93940 0.97476 0.91692 0.93996 0.91072 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 7.29 71.98 0.52 -2.32 16 2 C -0.14 -2.55 2.38 -10.79 -0.03 -2.58 16 3 C -0.14 -2.01 9.17 71.98 0.66 -1.35 16 4 C 0.05 0.96 5.29 86.30 0.46 1.42 16 5 N -0.52 -12.43 5.53 -882.43 -4.88 -17.31 16 6 C 0.02 0.49 5.69 86.45 0.49 0.98 16 7 C -0.11 -2.83 6.03 31.47 0.19 -2.64 16 8 C -0.12 -3.53 3.44 -10.34 -0.04 -3.56 16 9 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 10 C 0.52 18.60 7.02 87.65 0.62 19.22 16 11 O -0.59 -23.96 15.75 -3.04 -0.05 -24.01 16 12 N -0.69 -25.19 3.89 -463.06 -1.80 -26.99 16 13 C 0.14 5.07 4.44 86.38 0.38 5.45 16 14 C 0.13 4.76 3.19 44.97 0.14 4.90 16 15 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 16 C 0.06 1.86 6.29 72.08 0.45 2.32 16 17 O -0.40 -14.46 10.74 -148.98 -1.60 -16.06 16 18 C 0.05 1.68 6.98 72.08 0.50 2.18 16 19 C 0.15 6.78 5.35 86.35 0.46 7.25 16 20 N -0.60 -27.40 3.02 -673.74 -2.04 -29.43 16 21 C -0.24 -11.86 7.03 84.03 0.59 -11.27 16 22 H 0.06 3.14 5.97 -2.91 -0.02 3.12 16 23 C -0.02 -1.26 5.15 84.86 0.44 -0.83 16 24 N -0.92 -49.94 11.10 21.65 0.24 -49.70 16 25 Si 0.94 42.76 29.56 68.60 2.03 44.79 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 29 C 0.05 1.37 4.67 86.61 0.40 1.77 16 30 H 0.07 1.08 7.19 -2.39 -0.02 1.07 16 31 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 32 H 0.05 1.05 4.70 -2.39 -0.01 1.04 16 33 H 0.06 1.49 5.83 -2.39 -0.01 1.47 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 1.37 7.89 -2.39 -0.02 1.35 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.08 1.44 4.17 -2.39 -0.01 1.43 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.75 7.67 -2.39 -0.02 1.73 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.41 15.77 7.44 -92.71 -0.69 15.08 16 44 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.05 1.89 7.46 -2.39 -0.02 1.87 16 46 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 49 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 50 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 51 H 0.06 3.28 6.41 -2.39 -0.02 3.26 16 52 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 53 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 54 H 0.08 2.22 3.51 -2.39 -0.01 2.21 16 Total: -1.00 -59.48 397.09 -1.64 -61.12 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: 0.20 Total: 36.63 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 6.25 Total: 20.96 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -8.48 Total: -123.43 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.65 Total: -40.07 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -59.48 -1.64 -61.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050954348.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.457 kcal (2) G-P(sol) polarization free energy of solvation -59.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds