Wall clock time and date at job start Tue Mar 31 2020 23:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47227 * 2 1 4 4 C 1.53006 * 109.46756 * 119.99184 * 2 1 3 5 5 N 1.46909 * 109.46667 * 64.96276 * 4 2 1 6 6 C 1.47842 * 111.00356 * 74.76317 * 5 4 2 7 7 C 1.55116 * 104.90440 * 146.23712 * 6 5 4 8 8 C 1.55135 * 101.55945 * 323.16224 * 7 6 5 9 9 H 1.09001 * 110.70455 * 276.96326 * 8 7 6 10 10 C 1.50695 * 110.70602 * 153.90697 * 8 7 6 11 11 O 1.21283 * 120.00356 * 243.79943 * 10 8 7 12 12 N 1.34783 * 120.00167 * 63.80144 * 10 8 7 13 13 C 1.46505 * 120.00083 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.46782 * 179.97438 * 13 12 10 15 15 H 1.08994 * 109.70903 * 60.55950 * 14 13 12 16 16 C 1.53299 * 109.67612 * 181.09419 * 14 13 12 17 17 O 1.42959 * 109.22118 * 172.02711 * 16 14 13 18 18 C 1.42963 * 114.16730 * 297.41833 * 17 16 14 19 19 C 1.53303 * 109.22177 * 62.57881 * 18 17 16 20 20 N 1.47144 * 109.68263 * 300.01656 * 14 13 12 21 21 C 1.36936 * 120.98393 * 10.02177 * 20 14 13 22 22 H 1.08006 * 119.99956 * 327.98083 * 21 20 14 23 23 C 1.38810 * 120.00353 * 147.97970 * 21 20 14 24 24 N 1.31618 * 120.00596 * 168.18906 * 23 21 20 25 25 Si 1.86800 * 120.00028 * 348.19110 * 23 21 20 26 26 H 1.48499 * 109.47482 * 86.70612 * 25 23 21 27 27 H 1.48498 * 109.47168 * 206.70894 * 25 23 21 28 28 H 1.48506 * 109.46950 * 326.70768 * 25 23 21 29 29 C 1.47450 * 110.99599 * 195.60968 * 5 4 2 30 30 H 1.08990 * 109.47096 * 300.00801 * 1 2 3 31 31 H 1.09005 * 109.46424 * 60.00384 * 1 2 3 32 32 H 1.09004 * 109.46998 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.47096 * 239.99199 * 2 1 3 34 34 H 1.09002 * 109.46769 * 304.77591 * 3 2 1 35 35 H 1.08997 * 109.47609 * 64.77321 * 3 2 1 36 36 H 1.08999 * 109.47119 * 184.77720 * 3 2 1 37 37 H 1.08998 * 109.47454 * 304.96067 * 4 2 1 38 38 H 1.08996 * 109.46832 * 184.95433 * 4 2 1 39 39 H 1.09003 * 110.37426 * 265.19211 * 6 5 4 40 40 H 1.08996 * 110.37367 * 27.41988 * 6 5 4 41 41 H 1.08997 * 111.14695 * 205.04808 * 7 6 5 42 42 H 1.09005 * 110.91796 * 81.16997 * 7 6 5 43 43 H 0.96999 * 119.99513 * 0.02562 * 12 10 8 44 44 H 1.09001 * 109.46736 * 60.00509 * 13 12 10 45 45 H 1.08997 * 109.46825 * 300.00415 * 13 12 10 46 46 H 1.08996 * 109.51615 * 52.10033 * 16 14 13 47 47 H 1.09005 * 109.50887 * 291.94920 * 16 14 13 48 48 H 1.09000 * 109.51074 * 302.65893 * 18 17 16 49 49 H 1.09000 * 109.55897 * 182.52845 * 18 17 16 50 50 H 1.09002 * 109.67890 * 187.97286 * 19 18 17 51 51 H 1.08998 * 109.67601 * 67.42499 * 19 18 17 52 52 H 0.96995 * 120.00726 * 179.97438 * 24 23 21 53 53 H 1.08997 * 109.89015 * 117.33331 * 29 5 4 54 54 H 1.08997 * 109.88885 * 356.14348 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6505 -2.1364 1.1911 6 6 2.4853 -2.8762 0.2208 7 6 2.6330 -4.2977 0.8238 8 6 2.7332 -3.9835 2.3397 9 1 3.7541 -3.7145 2.6109 10 6 2.2574 -5.1552 3.1593 11 8 1.2769 -5.0438 3.8644 12 7 2.9215 -6.3269 3.1089 13 6 2.4592 -7.4658 3.9061 14 6 3.3815 -8.6631 3.6676 15 1 4.3978 -8.4101 3.9695 16 6 2.8861 -9.8659 4.4787 17 8 3.6377 -11.0245 4.1091 18 6 3.4864 -11.4081 2.7403 19 6 4.0125 -10.2842 1.8401 20 7 3.3638 -9.0260 2.2417 21 6 2.7665 -8.2138 1.3150 22 1 1.9053 -7.6229 1.5900 23 6 3.2677 -8.1501 0.0221 24 7 2.5703 -7.5607 -0.9259 25 14 4.9320 -8.9009 -0.3725 26 1 4.7611 -10.3390 -0.7006 27 1 5.5302 -8.1957 -1.5344 28 1 5.8279 -8.7647 0.8040 29 6 1.7869 -2.7768 2.5122 30 1 -0.3633 0.5139 0.8898 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 1.6085 1.9804 -0.8441 35 1 1.7483 1.9311 0.9296 36 1 3.1267 1.4436 -0.0856 37 1 1.6059 -0.2611 2.1371 38 1 3.1263 -0.6449 1.2949 39 1 1.9888 -2.9238 -0.7484 40 1 3.4625 -2.4034 0.1229 41 1 3.5398 -4.7848 0.4652 42 1 1.7540 -4.9052 0.6082 43 1 3.7059 -6.4159 2.5453 44 1 1.4426 -7.7265 3.6119 45 1 2.4747 -7.1996 4.9630 46 1 1.8298 -10.0354 4.2704 47 1 3.0211 -9.6683 5.5422 48 1 2.4322 -11.5832 2.5256 49 1 4.0527 -12.3203 2.5522 50 1 3.7734 -10.5049 0.7997 51 1 5.0924 -10.1946 1.9580 52 1 2.9207 -7.5158 -1.8292 53 1 0.8122 -3.1170 2.8619 54 1 2.2129 -2.0703 3.2245 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050954349.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:57 Heat of formation + Delta-G solvation = -70.564701 kcal Electronic energy + Delta-G solvation = -31788.052907 eV Core-core repulsion = 27759.749396 eV Total energy + Delta-G solvation = -4028.303512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.28895 -40.33073 -39.32018 -37.04003 -36.40356 -35.29505 -33.60988 -32.81261 -31.89911 -30.05229 -29.21192 -27.89755 -27.32787 -26.07626 -25.18083 -23.95084 -23.00064 -22.19067 -21.55282 -20.71575 -20.63124 -18.90221 -18.01264 -17.73212 -17.35859 -17.07247 -16.72118 -16.48677 -16.09499 -16.06827 -15.85210 -15.49296 -15.36894 -15.14466 -14.67406 -14.51664 -14.40302 -14.35926 -14.07526 -13.76694 -13.46158 -13.33799 -13.18465 -13.05381 -12.86938 -12.83537 -12.64944 -12.39491 -12.30871 -12.30320 -12.12926 -11.99249 -11.80821 -11.75957 -11.54365 -11.51029 -11.35516 -11.31891 -11.04118 -10.71640 -10.48108 -9.82993 -9.21706 -8.79193 -8.02470 -5.46465 1.32860 1.45328 1.51560 1.73460 2.35135 2.46178 2.88530 3.01392 3.06888 3.27738 3.55626 3.67219 3.93097 3.95031 3.99692 4.09810 4.15474 4.21211 4.27435 4.28887 4.34192 4.37390 4.39431 4.40213 4.47057 4.55741 4.62815 4.69232 4.71447 4.72811 4.74149 4.87570 4.88723 4.90930 4.93167 4.97076 5.04107 5.10775 5.15504 5.19693 5.22104 5.31850 5.32729 5.50036 5.56431 5.63622 5.93082 6.00654 6.19313 6.21204 6.27122 6.71894 6.90035 7.37087 7.64103 8.05255 9.12831 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.003146 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.012443 B = 8898.736156 C =10121.304139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 C -0.141 4.141 4 C 0.055 3.945 5 N -0.536 5.536 6 C 0.055 3.945 7 C -0.095 4.095 8 C -0.123 4.123 9 H 0.120 0.880 10 C 0.520 3.480 11 O -0.592 6.592 12 N -0.691 5.691 13 C 0.141 3.859 14 C 0.130 3.870 15 H 0.056 0.944 16 C 0.056 3.944 17 O -0.390 6.390 18 C 0.053 3.947 19 C 0.081 3.919 20 N -0.620 5.620 21 C -0.239 4.239 22 H 0.067 0.933 23 C -0.010 4.010 24 N -0.938 5.938 25 Si 0.935 3.065 26 H -0.284 1.284 27 H -0.319 1.319 28 H -0.263 1.263 29 C 0.068 3.932 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.410 0.590 44 H 0.040 0.960 45 H 0.083 0.917 46 H 0.047 0.953 47 H 0.123 0.877 48 H 0.048 0.952 49 H 0.115 0.885 50 H 0.064 0.936 51 H 0.038 0.962 52 H 0.258 0.742 53 H 0.067 0.933 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.142 9.457 5.878 11.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 C -0.199 4.199 4 C -0.073 4.073 5 N -0.260 5.260 6 C -0.073 4.073 7 C -0.133 4.133 8 C -0.145 4.145 9 H 0.138 0.862 10 C 0.307 3.693 11 O -0.474 6.474 12 N -0.341 5.341 13 C 0.017 3.983 14 C 0.024 3.976 15 H 0.074 0.926 16 C -0.022 4.022 17 O -0.309 6.309 18 C -0.025 4.025 19 C -0.043 4.043 20 N -0.348 5.348 21 C -0.368 4.368 22 H 0.084 0.916 23 C -0.207 4.207 24 N -0.583 5.583 25 Si 0.767 3.233 26 H -0.211 1.211 27 H -0.248 1.248 28 H -0.187 1.187 29 C -0.060 4.060 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.247 0.753 44 H 0.059 0.941 45 H 0.101 0.899 46 H 0.066 0.934 47 H 0.141 0.859 48 H 0.066 0.934 49 H 0.132 0.868 50 H 0.082 0.918 51 H 0.056 0.944 52 H 0.067 0.933 53 H 0.085 0.915 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.047 9.457 6.205 11.714 hybrid contribution 1.483 -0.604 -1.143 1.967 sum 4.530 8.854 5.061 11.159 Atomic orbital electron populations 1.21677 0.95028 1.01384 1.01167 1.21073 0.96431 0.96228 0.97238 1.21775 1.01004 0.94736 1.02362 1.22495 0.98287 0.87325 0.99180 1.63539 1.53631 1.02890 1.05945 1.23010 0.95951 0.92002 0.96320 1.22403 1.02189 0.96979 0.91771 1.22487 1.02102 0.93962 0.95923 0.86219 1.20613 0.82707 0.84621 0.81385 1.90599 1.28225 1.84691 1.43900 1.45951 1.31869 1.10253 1.46010 1.21098 0.97126 0.85178 0.94921 1.21598 0.97765 0.93539 0.84662 0.92639 1.23012 0.94702 0.84646 0.99846 1.87837 1.70298 1.45756 1.26972 1.23028 1.00720 0.97244 0.81541 1.22170 0.96186 0.87344 0.98640 1.44548 1.66807 1.20170 1.03226 1.18748 1.07715 1.19919 0.90447 0.91580 1.25726 0.99709 0.98880 0.96369 1.69881 1.38763 1.48148 1.01488 0.86211 0.83397 0.77259 0.76482 1.21139 1.24808 1.18738 1.22583 0.99064 0.93420 0.90951 0.92841 0.92746 0.93629 0.92136 0.91981 0.92129 0.92419 0.90465 0.93838 0.90902 0.91891 0.90874 0.93427 0.75314 0.94133 0.89864 0.93445 0.85880 0.93407 0.86760 0.91751 0.94424 0.93265 0.91458 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.08 71.98 0.65 -2.19 16 2 C -0.09 -1.79 2.97 -10.79 -0.03 -1.83 16 3 C -0.14 -2.12 9.19 71.98 0.66 -1.46 16 4 C 0.05 1.18 4.06 86.30 0.35 1.53 16 5 N -0.54 -14.90 4.58 -885.08 -4.05 -18.95 16 6 C 0.05 1.58 6.00 86.85 0.52 2.10 16 7 C -0.09 -3.32 6.52 32.05 0.21 -3.11 16 8 C -0.12 -3.84 3.32 -10.36 -0.03 -3.87 16 9 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 10 C 0.52 19.58 7.14 87.65 0.63 20.20 16 11 O -0.59 -25.67 15.44 -3.04 -0.05 -25.72 16 12 N -0.69 -25.44 3.73 -463.04 -1.72 -27.17 16 13 C 0.14 4.96 4.46 86.38 0.38 5.34 16 14 C 0.13 4.45 3.22 44.97 0.14 4.60 16 15 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 16 C 0.06 1.67 6.29 72.08 0.45 2.12 16 17 O -0.39 -12.53 10.74 -148.98 -1.60 -14.13 16 18 C 0.05 1.69 6.99 72.08 0.50 2.19 16 19 C 0.08 3.15 4.34 86.36 0.37 3.52 16 20 N -0.62 -25.76 2.79 -673.73 -1.88 -27.64 16 21 C -0.24 -11.68 7.47 84.03 0.63 -11.05 16 22 H 0.07 3.66 6.05 -2.91 -0.02 3.64 16 23 C -0.01 -0.52 5.36 84.86 0.46 -0.07 16 24 N -0.94 -52.40 13.97 21.65 0.30 -52.10 16 25 Si 0.94 42.12 24.21 68.60 1.66 43.78 16 26 H -0.28 -12.47 6.48 99.48 0.64 -11.82 16 27 H -0.32 -14.99 7.11 99.48 0.71 -14.28 16 28 H -0.26 -11.29 6.41 99.48 0.64 -10.65 16 29 C 0.07 2.02 6.26 86.64 0.54 2.56 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.04 1.18 7.75 -2.39 -0.02 1.16 16 33 H 0.06 1.31 7.58 -2.39 -0.02 1.30 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 1.56 7.86 -2.39 -0.02 1.55 16 38 H 0.04 0.86 7.68 -2.39 -0.02 0.84 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.06 1.56 7.53 -2.39 -0.02 1.54 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.05 2.11 8.04 -2.38 -0.02 2.09 16 43 H 0.41 15.42 7.25 -92.71 -0.67 14.75 16 44 H 0.04 1.66 7.61 -2.39 -0.02 1.64 16 45 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 48 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 50 H 0.06 2.72 4.69 -2.39 -0.01 2.71 16 51 H 0.04 1.45 6.63 -2.39 -0.02 1.44 16 52 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 53 H 0.07 2.42 6.84 -2.39 -0.02 2.41 16 54 H 0.07 1.84 7.47 -2.39 -0.02 1.82 16 Total: -1.00 -61.59 403.37 -0.83 -62.43 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: 0.07 Total: 38.92 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 6.44 Total: 20.58 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -7.35 Total: -125.86 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -1.65 Total: -39.84 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.66 Total: 43.78 kcal Total: -61.59 -0.83 -62.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050954349.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.138 kcal (2) G-P(sol) polarization free energy of solvation -61.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds