Wall clock time and date at job start Tue Mar 31 2020 23:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47342 * 2 1 4 4 C 1.52999 * 109.46614 * 119.99988 * 2 1 3 5 5 N 1.46905 * 109.47227 * 65.00084 * 4 2 1 6 6 C 1.47439 * 110.99815 * 69.87387 * 5 4 2 7 7 C 1.54322 * 107.23198 * 123.26088 * 6 5 4 8 8 C 1.55136 * 103.02229 * 22.27792 * 7 6 5 9 9 H 1.09007 * 110.98507 * 82.43992 * 8 7 6 10 10 C 1.50699 * 110.99242 * 206.21942 * 8 7 6 11 11 O 1.21273 * 119.99844 * 111.46669 * 10 8 7 12 12 N 1.34777 * 119.99796 * 291.46759 * 10 8 7 13 13 C 1.46503 * 119.99741 * 184.62829 * 12 10 8 14 14 C 1.53006 * 109.46952 * 182.75266 * 13 12 10 15 15 H 1.08995 * 109.67585 * 300.21673 * 14 13 12 16 16 C 1.53290 * 109.68091 * 179.69582 * 14 13 12 17 17 O 1.42958 * 109.22527 * 187.97468 * 16 14 13 18 18 C 1.42969 * 114.16454 * 62.58075 * 17 16 14 19 19 C 1.53291 * 109.22197 * 297.41953 * 18 17 16 20 20 N 1.47152 * 109.67926 * 60.77005 * 14 13 12 21 21 C 1.36934 * 120.98443 * 350.23717 * 20 14 13 22 22 H 1.08002 * 120.00070 * 33.24005 * 21 20 14 23 23 C 1.38815 * 119.99983 * 213.23794 * 21 20 14 24 24 N 1.31619 * 119.99871 * 8.46627 * 23 21 20 25 25 Si 1.86800 * 119.99858 * 188.46972 * 23 21 20 26 26 H 1.48496 * 109.47398 * 64.72152 * 25 23 21 27 27 H 1.48505 * 109.46756 * 184.72085 * 25 23 21 28 28 H 1.48503 * 109.46945 * 304.71702 * 25 23 21 29 29 C 1.47852 * 110.99876 * 190.71418 * 5 4 2 30 30 H 1.08998 * 109.46344 * 60.00245 * 1 2 3 31 31 H 1.08996 * 109.47243 * 300.00103 * 1 2 3 32 32 H 1.08996 * 109.47072 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47320 * 239.99683 * 2 1 3 34 34 H 1.09000 * 109.46714 * 60.00148 * 3 2 1 35 35 H 1.08997 * 109.47166 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47059 * 299.99989 * 3 2 1 37 37 H 1.09008 * 109.47077 * 184.99540 * 4 2 1 38 38 H 1.08995 * 109.47594 * 304.99744 * 4 2 1 39 39 H 1.09007 * 109.88818 * 242.66170 * 6 5 4 40 40 H 1.08995 * 109.89659 * 3.85069 * 6 5 4 41 41 H 1.08999 * 110.70336 * 140.66644 * 7 6 5 42 42 H 1.09006 * 110.70315 * 263.72083 * 7 6 5 43 43 H 0.97001 * 120.00356 * 4.62341 * 12 10 8 44 44 H 1.09000 * 109.46728 * 302.74887 * 13 12 10 45 45 H 1.08999 * 109.47294 * 62.75360 * 13 12 10 46 46 H 1.09006 * 109.51385 * 307.89993 * 16 14 13 47 47 H 1.08999 * 109.51130 * 68.04761 * 16 14 13 48 48 H 1.09003 * 109.50979 * 57.34615 * 18 17 16 49 49 H 1.09001 * 109.51162 * 177.44474 * 18 17 16 50 50 H 1.08997 * 109.68027 * 172.02439 * 19 18 17 51 51 H 1.09000 * 109.68580 * 292.54187 * 19 18 17 52 52 H 0.97004 * 120.00001 * 179.97438 * 24 23 21 53 53 H 1.08999 * 110.37448 * 332.46495 * 29 5 4 54 54 H 1.09000 * 110.36945 * 94.80786 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6513 -2.1367 1.1904 6 6 2.4041 -2.8482 0.1412 7 6 3.1297 -4.0289 0.8201 8 6 2.2963 -4.2572 2.1085 9 1 1.4143 -4.8631 1.9007 10 6 3.1364 -4.8850 3.1907 11 8 3.4225 -4.2482 4.1823 12 7 3.5696 -6.1542 3.0565 13 6 4.2995 -6.7986 4.1512 14 6 4.7337 -8.2006 3.7189 15 1 3.8558 -8.7951 3.4662 16 6 5.5047 -8.8766 4.8583 17 8 6.0641 -10.1040 4.3849 18 6 7.0169 -9.9448 3.3309 19 6 6.3233 -9.3236 2.1132 20 7 5.6221 -8.1057 2.5496 21 6 5.7911 -6.9192 1.8871 22 1 5.7578 -5.9871 2.4317 23 6 6.0052 -6.9145 0.5156 24 7 5.8809 -8.0289 -0.1737 25 14 6.4698 -5.3267 -0.3517 26 1 7.7977 -4.8693 0.1306 27 1 6.5295 -5.5621 -1.8168 28 1 5.4514 -4.2863 -0.0587 29 6 1.8981 -2.8082 2.4844 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 3.1263 -0.6445 1.2952 38 1 1.6054 -0.2618 2.1370 39 1 1.7179 -3.2222 -0.6187 40 1 3.1329 -2.1766 -0.3125 41 1 3.1055 -4.9134 0.1836 42 1 4.1573 -3.7602 1.0652 43 1 3.3980 -6.6410 2.2353 44 1 5.1800 -6.2058 4.3992 45 1 3.6528 -6.8720 5.0255 46 1 6.3049 -8.2185 5.1971 47 1 4.8257 -9.0813 5.6861 48 1 7.8226 -9.2907 3.6642 49 1 7.4265 -10.9181 3.0603 50 1 7.0666 -9.0685 1.3579 51 1 5.6063 -10.0318 1.6980 52 1 6.0301 -8.0256 -1.1322 53 1 2.7121 -2.3171 3.0175 54 1 0.9921 -2.8087 3.0904 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050954350.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:01 Heat of formation + Delta-G solvation = -75.985801 kcal Electronic energy + Delta-G solvation = -31831.174706 eV Core-core repulsion = 27802.636118 eV Total energy + Delta-G solvation = -4028.538588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.29392 -40.19323 -39.35545 -36.95609 -36.44730 -35.28232 -33.38789 -32.43372 -31.83446 -30.13481 -28.99119 -27.91902 -27.35968 -26.15558 -25.22146 -23.75222 -22.98799 -22.22633 -21.43348 -20.90913 -20.36506 -18.80952 -18.07408 -17.59734 -17.29975 -17.09654 -16.63568 -16.27791 -16.22799 -16.01943 -15.65474 -15.36361 -15.23818 -15.13669 -14.87826 -14.53464 -14.42882 -14.23984 -14.04849 -13.71575 -13.50383 -13.17524 -13.08933 -12.98375 -12.80936 -12.77737 -12.55359 -12.54314 -12.44921 -12.26883 -12.03087 -11.93367 -11.89236 -11.79963 -11.64926 -11.55965 -11.41420 -11.30639 -10.87733 -10.56924 -10.53314 -9.83208 -9.34472 -8.57792 -7.85243 -5.38805 1.41422 1.48383 1.50948 1.69498 2.29574 2.46974 2.97188 3.04446 3.31989 3.45030 3.53992 3.58339 3.84199 3.95020 4.04012 4.08310 4.19112 4.26534 4.27846 4.31567 4.37180 4.38633 4.46799 4.55131 4.60668 4.64165 4.65796 4.67879 4.73291 4.75625 4.79797 4.86923 4.88129 4.92372 5.00146 5.05487 5.08054 5.11303 5.12432 5.18401 5.28220 5.30066 5.45899 5.55199 5.58582 5.64446 5.70027 5.90774 6.06939 6.29527 6.38818 6.71286 7.12383 7.33717 7.77389 8.35000 9.18740 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016137 B = 0.003258 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.704137 B = 8591.338707 C = 9805.912382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 C -0.145 4.145 4 C 0.053 3.947 5 N -0.521 5.521 6 C 0.048 3.952 7 C -0.130 4.130 8 C -0.110 4.110 9 H 0.126 0.874 10 C 0.518 3.482 11 O -0.592 6.592 12 N -0.691 5.691 13 C 0.142 3.858 14 C 0.126 3.874 15 H 0.038 0.962 16 C 0.057 3.943 17 O -0.397 6.397 18 C 0.046 3.954 19 C 0.150 3.850 20 N -0.604 5.604 21 C -0.240 4.240 22 H 0.063 0.937 23 C -0.023 4.023 24 N -0.926 5.926 25 Si 0.925 3.075 26 H -0.304 1.304 27 H -0.301 1.301 28 H -0.236 1.236 29 C 0.070 3.930 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.411 0.589 44 H 0.046 0.954 45 H 0.080 0.920 46 H 0.047 0.953 47 H 0.118 0.882 48 H 0.041 0.959 49 H 0.104 0.896 50 H 0.063 0.937 51 H 0.008 0.992 52 H 0.249 0.751 53 H 0.040 0.960 54 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.808 9.577 2.005 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.075 4.075 5 N -0.245 5.245 6 C -0.080 4.080 7 C -0.169 4.169 8 C -0.132 4.132 9 H 0.144 0.856 10 C 0.305 3.695 11 O -0.474 6.474 12 N -0.340 5.340 13 C 0.018 3.982 14 C 0.020 3.980 15 H 0.056 0.944 16 C -0.022 4.022 17 O -0.316 6.316 18 C -0.032 4.032 19 C 0.025 3.975 20 N -0.330 5.330 21 C -0.370 4.370 22 H 0.080 0.920 23 C -0.220 4.220 24 N -0.571 5.571 25 Si 0.755 3.245 26 H -0.231 1.231 27 H -0.228 1.228 28 H -0.160 1.160 29 C -0.058 4.058 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.248 0.752 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.065 0.935 47 H 0.136 0.864 48 H 0.060 0.940 49 H 0.122 0.878 50 H 0.081 0.919 51 H 0.026 0.974 52 H 0.058 0.942 53 H 0.058 0.942 54 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.194 9.799 2.493 13.666 hybrid contribution 1.773 0.481 -1.137 2.161 sum -7.421 10.280 1.355 12.751 Atomic orbital electron populations 1.21657 0.93937 1.02050 1.01267 1.21103 0.97235 0.95852 0.96724 1.21804 1.00635 0.95276 1.02529 1.22433 0.97280 0.88139 0.99678 1.63720 1.54575 1.02413 1.03761 1.22846 0.95921 0.94147 0.95084 1.22909 0.98288 1.00133 0.95526 1.22379 0.99042 0.98094 0.93639 0.85636 1.20636 0.79976 0.81494 0.87384 1.90614 1.60416 1.62845 1.33562 1.45959 1.54829 1.13755 1.19501 1.21104 0.95548 0.92202 0.89396 1.21549 0.93007 0.94210 0.89221 0.94394 1.22996 0.97305 0.86088 0.95780 1.87805 1.59577 1.30588 1.53622 1.23217 0.90554 1.01215 0.88215 1.21210 0.95055 0.87246 0.94000 1.44252 1.49543 1.06980 1.32266 1.19113 1.43490 0.85652 0.88708 0.91961 1.25589 1.01206 0.98245 0.96977 1.70081 1.53694 1.26952 1.06412 0.86107 0.78726 0.82633 0.77030 1.23145 1.22814 1.16029 1.22742 1.00631 0.90966 0.91499 0.92615 0.92899 0.92460 0.91826 0.92151 0.93261 0.91557 0.95885 0.90400 0.88927 0.92642 0.90058 0.92813 0.75181 0.93519 0.90189 0.93510 0.86421 0.94041 0.87824 0.91883 0.97417 0.94191 0.94184 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.08 71.98 0.65 -1.57 16 2 C -0.09 -1.65 2.89 -10.79 -0.03 -1.69 16 3 C -0.14 -2.24 9.19 71.98 0.66 -1.58 16 4 C 0.05 1.16 3.93 86.30 0.34 1.50 16 5 N -0.52 -12.64 4.61 -885.52 -4.08 -16.72 16 6 C 0.05 1.21 6.13 86.65 0.53 1.74 16 7 C -0.13 -3.93 5.67 31.77 0.18 -3.75 16 8 C -0.11 -3.17 3.43 -10.16 -0.03 -3.21 16 9 H 0.13 3.12 8.14 -2.38 -0.02 3.10 16 10 C 0.52 18.31 7.15 87.66 0.63 18.93 16 11 O -0.59 -24.28 15.72 -3.01 -0.05 -24.33 16 12 N -0.69 -24.68 3.74 -463.05 -1.73 -26.41 16 13 C 0.14 4.99 4.46 86.38 0.38 5.38 16 14 C 0.13 4.69 3.20 44.97 0.14 4.83 16 15 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 16 C 0.06 1.86 6.29 72.08 0.45 2.31 16 17 O -0.40 -14.46 10.74 -148.98 -1.60 -16.06 16 18 C 0.05 1.69 6.98 72.08 0.50 2.19 16 19 C 0.15 6.77 5.36 86.35 0.46 7.23 16 20 N -0.60 -27.12 3.02 -673.73 -2.04 -29.16 16 21 C -0.24 -11.54 7.04 84.03 0.59 -10.95 16 22 H 0.06 3.10 5.92 -2.91 -0.02 3.08 16 23 C -0.02 -1.16 5.10 84.86 0.43 -0.73 16 24 N -0.93 -49.52 11.16 21.65 0.24 -49.28 16 25 Si 0.93 40.82 29.56 68.60 2.03 42.85 16 26 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 28 H -0.24 -9.35 4.32 99.48 0.43 -8.92 16 29 C 0.07 1.90 5.81 86.77 0.50 2.40 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 1.10 7.75 -2.39 -0.02 1.08 16 33 H 0.06 1.25 7.05 -2.38 -0.02 1.23 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.02 0.56 7.96 -2.38 -0.02 0.54 16 38 H 0.08 1.63 8.07 -2.39 -0.02 1.61 16 39 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.06 1.40 6.94 -2.39 -0.02 1.39 16 41 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.05 1.92 6.19 -2.38 -0.01 1.91 16 43 H 0.41 15.40 7.47 -92.71 -0.69 14.70 16 44 H 0.05 1.85 7.54 -2.39 -0.02 1.83 16 45 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 48 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 50 H 0.06 3.18 6.42 -2.39 -0.02 3.16 16 51 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 52 H 0.25 13.24 8.31 -92.71 -0.77 12.46 16 53 H 0.04 1.26 7.06 -2.39 -0.02 1.25 16 54 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -58.60 405.74 -0.93 -59.53 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.10 Total: 36.55 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 6.40 Total: 23.04 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -7.61 Total: -121.57 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.65 Total: -40.39 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -58.60 -0.93 -59.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050954350.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.458 kcal (2) G-P(sol) polarization free energy of solvation -58.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds