Wall clock time and date at job start Tue Mar 31 2020 23:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46737 * 2 1 4 4 C 1.52998 * 109.47000 * 119.99844 * 2 1 3 5 5 N 1.46900 * 109.47015 * 176.88224 * 4 2 1 6 6 C 1.48559 * 110.99982 * 284.37575 * 5 4 2 7 7 C 1.54378 * 104.59601 * 200.95990 * 6 5 4 8 8 C 1.54259 * 105.06157 * 23.85464 * 7 6 5 9 9 H 1.08997 * 110.32554 * 241.00416 * 8 7 6 10 10 C 1.50698 * 110.32206 * 118.89269 * 8 7 6 11 11 O 1.21280 * 120.00092 * 241.45349 * 10 8 7 12 12 N 1.34779 * 119.99934 * 61.45843 * 10 8 7 13 13 C 1.46504 * 119.99868 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.46727 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.67727 * 300.83571 * 14 13 12 16 16 C 1.53297 * 109.67815 * 180.32117 * 14 13 12 17 17 O 1.42965 * 109.22018 * 187.93715 * 16 14 13 18 18 C 1.42962 * 114.16793 * 62.58133 * 17 16 14 19 19 C 1.53300 * 109.21914 * 297.41577 * 18 17 16 20 20 N 1.47148 * 108.38436 * 52.30804 * 19 18 17 21 21 C 1.36932 * 120.98678 * 129.44110 * 20 19 18 22 22 H 1.08003 * 120.00437 * 209.70150 * 21 20 19 23 23 C 1.38815 * 119.99611 * 29.70247 * 21 20 19 24 24 N 1.31615 * 120.00495 * 13.82897 * 23 21 20 25 25 Si 1.86809 * 119.99697 * 193.82866 * 23 21 20 26 26 H 1.48498 * 109.47096 * 89.99979 * 25 23 21 27 27 H 1.48505 * 109.46727 * 209.99815 * 25 23 21 28 28 H 1.48499 * 109.47015 * 329.99881 * 25 23 21 29 29 C 1.48554 * 110.99925 * 168.96041 * 5 4 2 30 30 H 1.08997 * 109.47433 * 295.45113 * 1 2 3 31 31 H 1.09007 * 109.47054 * 55.45216 * 1 2 3 32 32 H 1.08997 * 109.46626 * 175.44717 * 1 2 3 33 33 H 1.09000 * 109.47656 * 240.00581 * 2 1 3 34 34 H 1.09003 * 109.46868 * 179.97438 * 3 2 1 35 35 H 1.08991 * 109.47335 * 299.99907 * 3 2 1 36 36 H 1.08995 * 109.47257 * 60.00057 * 3 2 1 37 37 H 1.08999 * 109.47259 * 56.87878 * 4 2 1 38 38 H 1.09001 * 109.47523 * 296.87763 * 4 2 1 39 39 H 1.09010 * 110.40874 * 82.18336 * 6 5 4 40 40 H 1.08997 * 110.51305 * 319.79425 * 6 5 4 41 41 H 1.09000 * 110.32222 * 264.95841 * 7 6 5 42 42 H 1.09001 * 110.32251 * 142.75658 * 7 6 5 43 43 H 0.96997 * 120.00320 * 359.97438 * 12 10 8 44 44 H 1.08997 * 109.47063 * 59.99618 * 13 12 10 45 45 H 1.09000 * 109.46601 * 299.99598 * 13 12 10 46 46 H 1.09000 * 109.51672 * 68.01296 * 16 14 13 47 47 H 1.09002 * 109.55369 * 307.87948 * 16 14 13 48 48 H 1.08996 * 109.51339 * 177.49488 * 18 17 16 49 49 H 1.09002 * 109.55561 * 57.36452 * 18 17 16 50 50 H 1.09003 * 109.67533 * 172.02474 * 19 18 17 51 51 H 1.08997 * 109.67929 * 292.57848 * 19 18 17 52 52 H 0.96993 * 120.00307 * 180.02562 * 24 23 21 53 53 H 1.09005 * 110.41494 * 40.26210 * 29 5 4 54 54 H 1.09004 * 110.41271 * 277.81726 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5070 -0.7868 1.2122 6 6 3.9697 -1.8178 0.2478 7 6 5.4099 -2.1494 0.6940 8 6 5.4647 -1.7678 2.1876 9 1 6.2109 -0.9906 2.3526 10 6 5.7783 -2.9799 3.0264 11 8 4.9832 -3.3644 3.8575 12 7 6.9425 -3.6365 2.8530 13 6 7.2476 -4.8145 3.6688 14 6 8.6189 -5.3667 3.2743 15 1 8.6166 -5.6343 2.2177 16 6 8.9395 -6.6046 4.1197 17 8 10.2912 -7.0025 3.8777 18 6 11.2653 -6.0273 4.2572 19 6 11.0636 -4.7599 3.4187 20 7 9.6540 -4.3516 3.5263 21 6 9.3155 -3.0654 3.8517 22 1 8.3962 -2.8667 4.3827 23 6 10.1538 -2.0167 3.4990 24 7 11.1215 -2.2118 2.6285 25 14 9.9084 -0.3283 4.2598 26 1 10.7120 -0.2246 5.5042 27 1 10.3465 0.7159 3.2991 28 1 8.4716 -0.1341 4.5808 29 6 4.0529 -1.2376 2.5182 30 1 -0.3634 0.4416 0.9279 31 1 -0.3633 0.5828 -0.8465 32 1 -0.3632 -1.0244 -0.0816 33 1 1.8934 -0.5137 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8899 37 1 1.6317 -1.7314 1.2777 38 1 1.7231 -0.1761 2.1384 39 1 3.9685 -1.4176 -0.7662 40 1 3.3397 -2.7054 0.3061 41 1 6.1279 -1.5583 0.1256 42 1 5.6099 -3.2135 0.5675 43 1 7.5784 -3.3291 2.1881 44 1 6.4875 -5.5779 3.5032 45 1 7.2577 -4.5342 4.7221 46 1 8.2663 -7.4170 3.8459 47 1 8.8134 -6.3676 5.1761 48 1 12.2652 -6.4243 4.0823 49 1 11.1486 -5.7871 5.3140 50 1 11.7061 -3.9642 3.7960 51 1 11.3076 -4.9664 2.3767 52 1 11.7075 -1.4792 2.3823 53 1 3.4355 -2.0340 2.9339 54 1 4.1145 -0.4006 3.2138 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050954351.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:05 Heat of formation + Delta-G solvation = -77.097202 kcal Electronic energy + Delta-G solvation = -31454.337620 eV Core-core repulsion = 27425.750838 eV Total energy + Delta-G solvation = -4028.586782 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.34244 -40.18303 -39.26929 -36.97492 -36.45367 -35.31877 -33.42199 -32.48983 -31.83821 -30.03721 -28.99882 -27.91038 -27.38083 -26.09338 -25.23650 -23.66650 -22.83615 -22.35780 -21.42360 -21.00002 -20.37336 -18.73843 -18.02244 -17.53373 -17.38647 -17.10919 -16.65749 -16.28410 -16.21817 -16.04309 -15.61346 -15.42190 -15.32529 -14.98025 -14.83397 -14.65653 -14.46149 -14.24177 -14.00430 -13.53446 -13.46590 -13.15257 -13.11996 -12.90700 -12.78111 -12.72521 -12.57189 -12.50243 -12.42368 -12.27726 -12.12443 -12.01029 -11.84919 -11.82826 -11.75369 -11.60063 -11.37990 -11.30092 -10.88603 -10.59752 -10.53683 -9.86706 -9.47349 -8.64086 -7.86634 -5.35344 1.41677 1.48014 1.52373 1.68777 2.27382 2.46353 2.99975 3.06623 3.29257 3.44069 3.48498 3.63613 3.86837 3.97955 4.02873 4.09276 4.19192 4.24371 4.30737 4.33351 4.36910 4.46970 4.48476 4.57957 4.59995 4.63470 4.65513 4.66689 4.73963 4.74781 4.79328 4.82718 4.87586 4.96840 4.99817 5.05701 5.08272 5.10493 5.11677 5.17014 5.29112 5.29786 5.46973 5.55227 5.56571 5.63189 5.70345 5.81276 6.05374 6.29043 6.36645 6.68957 7.11002 7.31149 7.77395 8.33037 9.17952 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014757 B = 0.002992 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.907261 B = 9356.891881 C =10525.857468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.135 4.135 4 C 0.048 3.952 5 N -0.509 5.509 6 C 0.038 3.962 7 C -0.109 4.109 8 C -0.112 4.112 9 H 0.101 0.899 10 C 0.516 3.484 11 O -0.592 6.592 12 N -0.693 5.693 13 C 0.142 3.858 14 C 0.127 3.873 15 H 0.038 0.962 16 C 0.057 3.943 17 O -0.397 6.397 18 C 0.046 3.954 19 C 0.149 3.851 20 N -0.604 5.604 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.030 4.030 24 N -0.924 5.924 25 Si 0.942 3.058 26 H -0.293 1.293 27 H -0.293 1.293 28 H -0.275 1.275 29 C 0.055 3.945 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.412 0.588 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.117 0.883 47 H 0.048 0.952 48 H 0.104 0.896 49 H 0.043 0.957 50 H 0.065 0.935 51 H 0.008 0.992 52 H 0.250 0.750 53 H 0.049 0.951 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.471 0.079 -5.516 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.193 4.193 4 C -0.080 4.080 5 N -0.233 5.233 6 C -0.090 4.090 7 C -0.147 4.147 8 C -0.134 4.134 9 H 0.119 0.881 10 C 0.302 3.698 11 O -0.474 6.474 12 N -0.343 5.343 13 C 0.017 3.983 14 C 0.021 3.979 15 H 0.056 0.944 16 C -0.021 4.021 17 O -0.316 6.316 18 C -0.031 4.031 19 C 0.023 3.977 20 N -0.330 5.330 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.227 4.227 24 N -0.570 5.570 25 Si 0.772 3.228 26 H -0.221 1.221 27 H -0.220 1.220 28 H -0.200 1.200 29 C -0.073 4.073 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.249 0.751 44 H 0.097 0.903 45 H 0.067 0.933 46 H 0.135 0.865 47 H 0.067 0.933 48 H 0.122 0.878 49 H 0.061 0.939 50 H 0.083 0.917 51 H 0.026 0.974 52 H 0.059 0.941 53 H 0.067 0.933 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.681 0.278 -5.222 15.585 hybrid contribution 0.454 0.704 0.644 1.057 sum -14.227 0.983 -4.579 14.978 Atomic orbital electron populations 1.21803 0.94150 1.01938 1.02314 1.21037 0.95805 0.96771 0.96854 1.21683 1.01395 0.95083 1.01096 1.22405 0.86807 0.99241 0.99559 1.65416 1.10055 1.43398 1.04421 1.23151 0.94357 0.93477 0.97980 1.22295 0.98254 1.02053 0.92138 1.21978 0.99607 0.95341 0.96497 0.88081 1.20760 0.80964 0.84715 0.83312 1.90602 1.49591 1.69362 1.37835 1.46007 1.18859 1.29532 1.39871 1.21107 0.95078 0.87282 0.94804 1.21538 0.88414 0.90550 0.97443 0.94431 1.22992 0.83676 0.97045 0.98432 1.87807 1.15750 1.42151 1.85876 1.23209 0.92246 0.89965 0.97724 1.21241 0.86281 0.94247 0.95937 1.44293 1.00521 1.06462 1.81712 1.19280 1.06751 0.82560 1.28608 0.91328 1.25528 0.99509 0.99815 0.97841 1.70104 1.21391 1.31911 1.33598 0.85660 0.77816 0.81683 0.77647 1.22064 1.21952 1.19998 1.22844 0.92952 0.99009 0.92532 0.92582 0.91622 0.92646 0.91292 0.92771 0.92546 0.93357 0.94709 0.91018 0.88321 0.93772 0.89219 0.90861 0.75077 0.90335 0.93334 0.86488 0.93340 0.87772 0.93884 0.91669 0.97419 0.94071 0.93289 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.19 71.98 0.66 -1.27 16 2 C -0.09 -1.41 2.97 -10.79 -0.03 -1.44 16 3 C -0.14 -2.30 9.07 71.98 0.65 -1.65 16 4 C 0.05 0.96 4.25 86.30 0.37 1.33 16 5 N -0.51 -11.89 4.70 -881.48 -4.14 -16.03 16 6 C 0.04 0.82 5.94 86.45 0.51 1.33 16 7 C -0.11 -2.67 6.57 31.49 0.21 -2.46 16 8 C -0.11 -3.36 3.45 -10.64 -0.04 -3.39 16 9 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 10 C 0.52 18.41 6.96 87.66 0.61 19.02 16 11 O -0.59 -24.28 15.46 -3.03 -0.05 -24.33 16 12 N -0.69 -24.96 3.65 -463.06 -1.69 -26.65 16 13 C 0.14 5.00 4.44 86.38 0.38 5.38 16 14 C 0.13 4.70 3.20 44.97 0.14 4.84 16 15 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 16 C 0.06 1.85 6.29 72.08 0.45 2.31 16 17 O -0.40 -14.36 10.74 -148.98 -1.60 -15.96 16 18 C 0.05 1.69 6.99 72.08 0.50 2.20 16 19 C 0.15 6.65 5.40 86.36 0.47 7.12 16 20 N -0.60 -27.09 3.03 -673.73 -2.04 -29.13 16 21 C -0.24 -11.75 7.16 84.03 0.60 -11.14 16 22 H 0.07 3.40 5.76 -2.91 -0.02 3.39 16 23 C -0.03 -1.53 4.99 84.86 0.42 -1.10 16 24 N -0.92 -49.74 11.21 21.65 0.24 -49.49 16 25 Si 0.94 42.54 29.58 68.60 2.03 44.57 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 27 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 29 C 0.05 1.54 5.77 86.45 0.50 2.04 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 1.14 7.40 -2.39 -0.02 1.12 16 34 H 0.05 1.09 7.69 -2.39 -0.02 1.07 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.03 0.71 7.75 -2.39 -0.02 0.69 16 38 H 0.07 1.45 8.07 -2.39 -0.02 1.43 16 39 H 0.10 1.81 7.80 -2.38 -0.02 1.79 16 40 H 0.04 0.95 7.74 -2.39 -0.02 0.93 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.07 1.80 7.65 -2.39 -0.02 1.78 16 43 H 0.41 15.61 7.36 -92.71 -0.68 14.93 16 44 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.05 1.90 7.53 -2.39 -0.02 1.89 16 46 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 47 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 49 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.06 3.27 6.31 -2.39 -0.02 3.25 16 51 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 52 H 0.25 13.28 8.31 -92.71 -0.77 12.51 16 53 H 0.05 1.52 6.79 -2.38 -0.02 1.51 16 54 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -59.04 410.61 -0.66 -59.70 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: 0.18 Total: 34.21 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: 6.42 Total: 23.11 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -7.64 Total: -121.30 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -1.65 Total: -40.28 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -59.04 -0.66 -59.70 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050954351.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.398 kcal (2) G-P(sol) polarization free energy of solvation -59.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds