Wall clock time and date at job start Tue Mar 31 2020 23:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46861 * 2 1 4 4 C 1.53006 * 109.46855 * 119.99630 * 2 1 3 5 5 N 1.46894 * 109.46763 * 65.00333 * 4 2 1 6 6 C 1.47848 * 111.00154 * 74.94038 * 5 4 2 7 7 C 1.54910 * 104.79353 * 146.35955 * 6 5 4 8 8 C 1.55139 * 101.65508 * 322.93162 * 7 6 5 9 9 C 1.47446 * 110.99533 * 195.78301 * 5 4 2 10 10 H 1.09006 * 109.88675 * 117.17848 * 9 5 4 11 11 C 1.50699 * 109.89053 * 356.14941 * 9 5 4 12 12 O 1.21279 * 119.99532 * 310.02684 * 11 9 5 13 13 N 1.34767 * 120.00010 * 130.02899 * 11 9 5 14 14 C 1.46507 * 120.00144 * 185.27922 * 13 11 9 15 15 C 1.52993 * 109.47157 * 185.34479 * 14 13 11 16 16 H 1.08998 * 109.68632 * 301.26366 * 15 14 13 17 17 C 1.53300 * 109.68115 * 180.74653 * 15 14 13 18 18 O 1.42960 * 109.22555 * 187.97625 * 17 15 14 19 19 C 1.42965 * 114.16872 * 62.57539 * 18 17 15 20 20 C 1.53297 * 109.22352 * 297.42439 * 19 18 17 21 21 N 1.47148 * 108.38351 * 52.30189 * 20 19 18 22 22 C 1.36939 * 120.98573 * 129.44638 * 21 20 19 23 23 H 1.07999 * 120.00494 * 212.61729 * 22 21 20 24 24 C 1.38820 * 119.99770 * 32.61019 * 22 21 20 25 25 N 1.31614 * 120.00140 * 8.67930 * 24 22 21 26 26 Si 1.86791 * 119.99795 * 188.67728 * 24 22 21 27 27 H 1.48498 * 109.47494 * 5.01457 * 26 24 22 28 28 H 1.48507 * 109.47178 * 125.01397 * 26 24 22 29 29 H 1.48502 * 109.47118 * 245.01077 * 26 24 22 30 30 H 1.08995 * 109.46675 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46968 * 300.00439 * 1 2 3 32 32 H 1.08996 * 109.46958 * 60.00359 * 1 2 3 33 33 H 1.08992 * 109.47318 * 239.99657 * 2 1 3 34 34 H 1.09004 * 109.46516 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47042 * 299.99590 * 3 2 1 36 36 H 1.08990 * 109.47144 * 60.00182 * 3 2 1 37 37 H 1.08995 * 109.47162 * 305.00133 * 4 2 1 38 38 H 1.08995 * 109.46490 * 185.00117 * 4 2 1 39 39 H 1.08990 * 110.37406 * 265.18689 * 6 5 4 40 40 H 1.09000 * 110.37077 * 27.53522 * 6 5 4 41 41 H 1.09004 * 110.98923 * 81.02224 * 7 6 5 42 42 H 1.09005 * 110.99159 * 204.83876 * 7 6 5 43 43 H 1.09004 * 110.70630 * 277.26934 * 8 7 6 44 44 H 1.09000 * 110.70644 * 154.04010 * 8 7 6 45 45 H 0.97004 * 120.00757 * 5.27991 * 13 11 9 46 46 H 1.08991 * 109.46872 * 65.34324 * 14 13 11 47 47 H 1.09004 * 109.46763 * 305.34332 * 14 13 11 48 48 H 1.09005 * 109.51064 * 307.89483 * 17 15 14 49 49 H 1.08999 * 109.51102 * 68.04702 * 17 15 14 50 50 H 1.08999 * 109.51460 * 177.49869 * 19 18 17 51 51 H 1.09007 * 109.54833 * 57.37054 * 19 18 17 52 52 H 1.08995 * 109.68197 * 292.57503 * 20 19 18 53 53 H 1.08999 * 109.70931 * 172.04137 * 20 19 18 54 54 H 0.96999 * 120.00095 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6514 -2.1366 1.1905 6 6 2.4899 -2.8765 0.2233 7 6 2.6317 -4.2958 0.8275 8 6 2.7313 -3.9826 2.3436 9 6 1.7838 -2.7762 2.5124 10 1 0.8076 -3.1142 2.8602 11 6 2.3691 -1.7986 3.4987 12 8 3.3753 -1.1826 3.2174 13 7 1.7745 -1.6089 4.6931 14 6 2.2746 -0.5768 5.6047 15 6 1.5172 -0.6578 6.9315 16 1 0.4502 -0.5232 6.7541 17 6 2.0239 0.4324 7.8827 18 8 1.4478 0.2338 9.1759 19 6 1.8117 -1.0023 9.7953 20 6 1.2941 -2.1659 8.9421 21 7 1.7546 -1.9678 7.5586 22 6 2.3856 -2.9725 6.8748 23 1 3.1492 -2.7350 6.1490 24 6 2.0439 -4.2964 7.1148 25 7 1.0025 -4.5812 7.8675 26 14 3.0621 -5.6736 6.3694 27 1 4.2391 -5.0970 5.6713 28 1 3.5235 -6.5866 7.4460 29 1 2.2332 -6.4323 5.3985 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6054 -0.2617 2.1370 38 1 3.1263 -0.6442 1.2952 39 1 1.9966 -2.9249 -0.7474 40 1 3.4679 -2.4044 0.1299 41 1 1.7521 -4.9021 0.6110 42 1 3.5382 -4.7839 0.4692 43 1 3.7518 -3.7121 2.6151 44 1 2.3857 -4.8299 2.9358 45 1 1.0153 -2.1558 4.9494 46 1 2.1226 0.4061 5.1590 47 1 3.3383 -0.7343 5.7833 48 1 3.1101 0.3760 7.9555 49 1 1.7342 1.4116 7.5015 50 1 1.3693 -1.0552 10.7900 51 1 2.8971 -1.0643 9.8756 52 1 0.2046 -2.1835 8.9674 53 1 1.6855 -3.1072 9.3279 54 1 0.7635 -5.5063 8.0349 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050999399.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:22 Heat of formation + Delta-G solvation = -68.214895 kcal Electronic energy + Delta-G solvation = -32593.955174 eV Core-core repulsion = 28565.753558 eV Total energy + Delta-G solvation = -4028.201616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.79591 -40.22673 -38.83052 -36.88482 -36.58211 -35.32905 -33.33697 -32.23195 -32.08308 -30.48792 -28.97165 -27.92423 -27.02724 -26.26612 -25.25484 -23.77293 -22.73401 -22.50491 -21.49046 -20.99212 -20.55588 -18.76144 -18.03247 -17.61456 -17.44389 -16.92121 -16.51173 -16.26798 -16.20449 -15.99409 -15.97128 -15.58140 -15.37939 -14.97651 -14.67620 -14.61238 -14.37472 -14.23723 -14.14719 -13.53122 -13.30518 -13.19982 -13.07394 -12.92585 -12.82697 -12.75185 -12.67461 -12.51910 -12.41826 -12.15952 -12.09012 -12.02272 -11.89707 -11.81306 -11.77538 -11.56514 -11.38995 -11.31663 -10.98673 -10.67409 -10.57714 -9.87369 -9.26959 -8.60803 -7.87737 -5.40171 1.36585 1.43716 1.50211 1.58245 2.28321 2.44278 2.96232 3.01258 3.28962 3.42025 3.49930 3.66958 3.81493 3.97401 4.00852 4.11643 4.14017 4.20806 4.31044 4.33010 4.34932 4.45711 4.48676 4.56675 4.61403 4.62741 4.63849 4.70921 4.72196 4.77371 4.80860 4.85291 4.94502 4.97543 4.98431 5.02120 5.08373 5.09765 5.17634 5.22646 5.26224 5.28542 5.45080 5.53557 5.56691 5.63203 5.68185 5.85084 6.00506 6.28096 6.37160 6.64692 7.10645 7.27705 7.75299 8.32324 9.16858 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011212 B = 0.004366 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.707108 B = 6412.004985 C = 8330.819217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 C -0.143 4.143 4 C 0.060 3.940 5 N -0.500 5.500 6 C 0.041 3.959 7 C -0.116 4.116 8 C -0.133 4.133 9 C 0.056 3.944 10 H 0.105 0.895 11 C 0.501 3.499 12 O -0.585 6.585 13 N -0.691 5.691 14 C 0.144 3.856 15 C 0.126 3.874 16 H 0.038 0.962 17 C 0.058 3.942 18 O -0.397 6.397 19 C 0.046 3.954 20 C 0.150 3.850 21 N -0.604 5.604 22 C -0.236 4.236 23 H 0.062 0.938 24 C -0.028 4.028 25 N -0.926 5.926 26 Si 0.938 3.062 27 H -0.280 1.280 28 H -0.296 1.296 29 H -0.279 1.279 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.104 0.896 40 H 0.041 0.959 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.409 0.591 46 H 0.077 0.923 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.117 0.883 50 H 0.105 0.895 51 H 0.042 0.958 52 H 0.007 0.993 53 H 0.065 0.935 54 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.274 6.425 -13.044 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.107 4.107 3 C -0.200 4.200 4 C -0.068 4.068 5 N -0.224 5.224 6 C -0.087 4.087 7 C -0.154 4.154 8 C -0.172 4.172 9 C -0.055 4.055 10 H 0.123 0.877 11 C 0.288 3.712 12 O -0.466 6.466 13 N -0.340 5.340 14 C 0.019 3.981 15 C 0.020 3.980 16 H 0.055 0.945 17 C -0.021 4.021 18 O -0.315 6.315 19 C -0.032 4.032 20 C 0.025 3.975 21 N -0.330 5.330 22 C -0.366 4.366 23 H 0.080 0.920 24 C -0.225 4.225 25 N -0.571 5.571 26 Si 0.767 3.233 27 H -0.205 1.205 28 H -0.223 1.223 29 H -0.205 1.205 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.122 0.878 40 H 0.059 0.941 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.245 0.755 46 H 0.095 0.905 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.135 0.865 50 H 0.123 0.877 51 H 0.060 0.940 52 H 0.025 0.975 53 H 0.083 0.917 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.291 6.853 -13.254 14.924 hybrid contribution 1.211 -1.512 0.669 2.050 sum 0.920 5.341 -12.585 13.702 Atomic orbital electron populations 1.21670 0.94224 1.02071 1.00976 1.21119 0.96894 0.95708 0.96954 1.21778 1.00584 0.95592 1.02093 1.22565 0.98446 0.87783 0.98016 1.64083 1.52202 1.02659 1.03485 1.23221 0.95508 0.93070 0.96853 1.22712 1.03818 0.96935 0.91891 1.22726 0.98375 0.96563 0.99501 1.22574 1.00216 0.93382 0.89321 0.87740 1.21212 0.83781 0.83279 0.82953 1.90622 1.26283 1.51579 1.78140 1.46031 1.34846 1.37205 1.15901 1.21079 0.97740 0.90639 0.88601 1.21546 0.97052 0.87631 0.91754 0.94480 1.22984 0.97020 0.98798 0.83284 1.87805 1.73190 1.38743 1.31803 1.23225 0.98831 0.84426 0.96734 1.21228 0.95582 0.96376 0.84345 1.44270 1.68698 1.09715 1.10345 1.19177 1.12949 0.85424 1.19098 0.92040 1.25600 0.97201 0.99334 1.00376 1.70081 1.27123 1.17737 1.42188 0.85660 0.78858 0.80667 0.78073 1.20545 1.22335 1.20513 0.92199 0.94108 0.92020 0.90763 0.93365 0.90926 0.93433 0.93420 0.94122 0.87794 0.94086 0.88956 0.89102 0.92842 0.90588 0.75464 0.90494 0.93442 0.93493 0.86472 0.87725 0.93953 0.97459 0.91676 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.08 71.98 0.65 -2.04 16 2 C -0.09 -1.92 2.97 -10.79 -0.03 -1.95 16 3 C -0.14 -2.85 9.19 71.98 0.66 -2.19 16 4 C 0.06 1.69 2.78 86.31 0.24 1.93 16 5 N -0.50 -13.44 4.58 -864.90 -3.96 -17.40 16 6 C 0.04 0.92 6.00 86.77 0.52 1.44 16 7 C -0.12 -2.52 7.08 31.98 0.23 -2.30 16 8 C -0.13 -3.95 6.46 31.77 0.21 -3.74 16 9 C 0.06 1.75 3.83 44.51 0.17 1.92 16 10 H 0.10 3.15 7.99 -2.38 -0.02 3.13 16 11 C 0.50 18.23 4.88 87.66 0.43 18.65 16 12 O -0.58 -23.91 13.73 -3.03 -0.04 -23.96 16 13 N -0.69 -25.49 3.70 -463.08 -1.71 -27.21 16 14 C 0.14 5.18 4.47 86.38 0.39 5.57 16 15 C 0.13 4.79 3.18 44.96 0.14 4.93 16 16 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 17 C 0.06 1.91 6.29 72.08 0.45 2.36 16 18 O -0.40 -14.57 10.74 -148.98 -1.60 -16.17 16 19 C 0.05 1.69 6.99 72.08 0.50 2.20 16 20 C 0.15 6.83 5.37 86.36 0.46 7.29 16 21 N -0.60 -27.61 3.03 -673.73 -2.04 -29.65 16 22 C -0.24 -11.68 7.21 84.04 0.61 -11.08 16 23 H 0.06 3.16 5.89 -2.91 -0.02 3.14 16 24 C -0.03 -1.46 5.10 84.86 0.43 -1.03 16 25 N -0.93 -50.22 11.12 21.65 0.24 -49.98 16 26 Si 0.94 42.58 29.56 68.60 2.03 44.61 16 27 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 28 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 29 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 30 H 0.06 1.30 7.75 -2.39 -0.02 1.28 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.50 7.59 -2.39 -0.02 1.48 16 34 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 1.54 6.49 -2.39 -0.02 1.52 16 38 H 0.04 1.35 6.06 -2.39 -0.01 1.34 16 39 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.00 7.53 -2.39 -0.02 0.98 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.05 1.82 7.76 -2.38 -0.02 1.80 16 44 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.41 15.83 7.58 -92.71 -0.70 15.13 16 46 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.05 1.93 7.44 -2.39 -0.02 1.91 16 48 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 49 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 50 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 51 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 52 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 53 H 0.06 3.31 6.37 -2.39 -0.02 3.29 16 54 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 Total: -1.00 -59.76 405.67 -0.86 -60.61 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.16 Total: 37.16 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 6.06 Total: 21.98 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -7.47 Total: -124.23 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.64 Total: -40.13 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -59.76 -0.86 -60.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050999399.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.600 kcal (2) G-P(sol) polarization free energy of solvation -59.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds