Wall clock time and date at job start Tue Mar 31 2020 23:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47534 * 2 1 4 4 C 1.52996 * 109.47059 * 120.00582 * 2 1 3 5 5 N 1.46900 * 109.47802 * 62.07032 * 4 2 1 6 6 C 1.48562 * 111.00289 * 193.79147 * 5 4 2 7 7 C 1.54374 * 104.59263 * 200.95671 * 6 5 4 8 8 C 1.54262 * 105.06333 * 23.85198 * 7 6 5 9 9 C 1.48553 * 111.00069 * 78.36725 * 5 4 2 10 10 H 1.09004 * 110.41120 * 40.26691 * 9 5 4 11 11 C 1.50698 * 110.41310 * 277.94389 * 9 5 4 12 12 O 1.21288 * 120.00072 * 336.40662 * 11 9 5 13 13 N 1.34775 * 120.00391 * 156.41223 * 11 9 5 14 14 C 1.46502 * 120.00255 * 179.97438 * 13 11 9 15 15 C 1.53005 * 109.47087 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.67539 * 59.10746 * 15 14 13 17 17 C 1.53294 * 109.68280 * 179.66420 * 15 14 13 18 18 O 1.42957 * 109.22569 * 172.02666 * 17 15 14 19 19 C 1.42966 * 114.16327 * 297.42046 * 18 17 15 20 20 C 1.53291 * 109.22426 * 62.58251 * 19 18 17 21 21 N 1.47151 * 108.38331 * 307.69322 * 20 19 18 22 22 C 1.36938 * 120.98380 * 230.55588 * 21 20 19 23 23 H 1.08002 * 119.99618 * 144.27123 * 22 21 20 24 24 C 1.38811 * 120.00078 * 324.27474 * 22 21 20 25 25 N 1.31620 * 119.99923 * 1.30681 * 24 22 21 26 26 Si 1.86794 * 119.99903 * 181.30554 * 24 22 21 27 27 H 1.48502 * 109.47346 * 359.97438 * 26 24 22 28 28 H 1.48508 * 109.47197 * 120.00088 * 26 24 22 29 29 H 1.48502 * 109.47146 * 240.00235 * 26 24 22 30 30 H 1.08996 * 109.47229 * 66.59858 * 1 2 3 31 31 H 1.08995 * 109.47897 * 186.60356 * 1 2 3 32 32 H 1.09007 * 109.46886 * 306.60130 * 1 2 3 33 33 H 1.09004 * 109.46731 * 240.00150 * 2 1 3 34 34 H 1.09002 * 109.47229 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47351 * 300.00266 * 3 2 1 36 36 H 1.09004 * 109.46989 * 60.00307 * 3 2 1 37 37 H 1.09009 * 109.46876 * 302.06837 * 4 2 1 38 38 H 1.09002 * 109.47532 * 182.07412 * 4 2 1 39 39 H 1.08994 * 110.40688 * 319.73343 * 6 5 4 40 40 H 1.08997 * 110.40940 * 82.17934 * 6 5 4 41 41 H 1.08999 * 110.32371 * 264.95583 * 7 6 5 42 42 H 1.09003 * 110.32603 * 142.74417 * 7 6 5 43 43 H 1.08994 * 110.32430 * 241.10384 * 8 7 6 44 44 H 1.09000 * 110.32869 * 118.89023 * 8 7 6 45 45 H 0.97007 * 119.99854 * 359.97438 * 13 11 9 46 46 H 1.08990 * 109.47071 * 299.99908 * 14 13 11 47 47 H 1.08996 * 109.46715 * 60.00027 * 14 13 11 48 48 H 1.09002 * 109.50724 * 291.95304 * 17 15 14 49 49 H 1.09002 * 109.50980 * 52.10329 * 17 15 14 50 50 H 1.08995 * 109.51400 * 302.65064 * 19 18 17 51 51 H 1.09000 * 109.54669 * 182.52687 * 19 18 17 52 52 H 1.09004 * 109.68484 * 187.97297 * 20 19 18 53 53 H 1.09004 * 109.68576 * 67.41719 * 20 19 18 54 54 H 0.96997 * 119.99546 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.5916 -2.1201 1.2244 6 6 1.7753 -2.7617 2.5517 7 6 1.7922 -4.2761 2.2526 8 6 2.2240 -4.3883 0.7759 9 6 2.4316 -2.9322 0.3070 10 1 3.4800 -2.6486 0.4003 11 6 1.9678 -2.7648 -1.1170 12 8 0.8276 -2.4211 -1.3470 13 7 2.8198 -2.9971 -2.1351 14 6 2.3687 -2.8349 -3.5195 15 6 3.5214 -3.1571 -4.4726 16 1 3.8600 -4.1798 -4.3064 17 6 3.0522 -2.9970 -5.9231 18 8 4.1766 -3.1171 -6.7977 19 6 5.1723 -2.1080 -6.6126 20 6 5.7503 -2.2227 -5.1975 21 7 4.6339 -2.2226 -4.2388 22 6 4.6300 -1.3776 -3.1613 23 1 3.7017 -0.9465 -2.8165 24 6 5.8192 -1.0750 -2.5123 25 7 6.9538 -1.5799 -2.9483 26 14 5.8091 0.0486 -1.0201 27 1 4.4172 0.4808 -0.7353 28 1 6.3511 -0.6821 0.1536 29 1 6.6511 1.2411 -1.2928 30 1 -0.3633 0.4081 -0.9431 31 1 -0.3635 -1.0207 0.1182 32 1 -0.3633 0.6128 0.8251 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9562 0.8900 37 1 1.6466 -0.2294 2.1388 38 1 3.1293 -0.6893 1.2680 39 1 2.7209 -2.4514 2.9962 40 1 0.9443 -2.5138 3.2120 41 1 0.7974 -4.7001 2.3895 42 1 2.5118 -4.7812 2.8969 43 1 1.4411 -4.8674 0.1880 44 1 3.1555 -4.9485 0.6953 45 1 3.7319 -3.2717 -1.9512 46 1 1.5371 -3.5125 -3.7123 47 1 2.0438 -1.8066 -3.6775 48 1 2.3238 -3.7732 -6.1578 49 1 2.5943 -2.0162 -6.0514 50 1 4.7222 -1.1240 -6.7435 51 1 5.9695 -2.2439 -7.3435 52 1 6.4051 -1.3743 -4.9984 53 1 6.3135 -3.1514 -5.1050 54 1 7.7848 -1.3682 -2.4949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050999401.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:26 Heat of formation + Delta-G solvation = -68.283957 kcal Electronic energy + Delta-G solvation = -33289.603185 eV Core-core repulsion = 29261.398574 eV Total energy + Delta-G solvation = -4028.204611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.34824 -40.17012 -38.87930 -36.82830 -36.64216 -35.19968 -33.27607 -32.24139 -32.08740 -30.40555 -28.95943 -27.95335 -26.94424 -26.32550 -25.23199 -23.78176 -22.83720 -21.92420 -21.43368 -21.01883 -20.52483 -18.81139 -18.03689 -17.55407 -17.43154 -17.05217 -16.50159 -16.32031 -16.04781 -15.87035 -15.70152 -15.33258 -15.25273 -15.08467 -14.85094 -14.62819 -14.35432 -14.27041 -13.96660 -13.57213 -13.46488 -13.11159 -13.07982 -12.91897 -12.90486 -12.72634 -12.70384 -12.45870 -12.37142 -12.17903 -12.04963 -11.98410 -11.91766 -11.64092 -11.55708 -11.47356 -11.33307 -11.29366 -10.75172 -10.57890 -10.45016 -9.73663 -9.45264 -8.54806 -7.86994 -5.42949 1.35458 1.43949 1.51604 1.82050 2.30341 2.44497 3.01258 3.09717 3.29570 3.46090 3.61987 3.65174 3.89200 4.00208 4.06498 4.10761 4.15783 4.22551 4.26443 4.32787 4.36973 4.48103 4.50608 4.58699 4.61506 4.63733 4.65620 4.67636 4.69090 4.77313 4.79318 4.84261 4.88653 4.99272 5.00919 5.01858 5.08963 5.14053 5.16326 5.22844 5.29467 5.33148 5.46095 5.62151 5.67122 5.69164 5.72295 5.84589 6.02048 6.30487 6.41378 6.81936 7.12722 7.50118 7.76097 8.34605 9.16122 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011446 B = 0.004782 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.788522 B = 5853.861308 C = 6533.243809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.150 4.150 4 C 0.052 3.948 5 N -0.492 5.492 6 C 0.029 3.971 7 C -0.112 4.112 8 C -0.108 4.108 9 C 0.042 3.958 10 H 0.056 0.944 11 C 0.520 3.480 12 O -0.555 6.555 13 N -0.702 5.702 14 C 0.150 3.850 15 C 0.127 3.873 16 H 0.037 0.963 17 C 0.057 3.943 18 O -0.398 6.398 19 C 0.045 3.955 20 C 0.148 3.852 21 N -0.605 5.605 22 C -0.230 4.230 23 H 0.065 0.935 24 C -0.029 4.029 25 N -0.928 5.928 26 Si 0.921 3.079 27 H -0.239 1.239 28 H -0.295 1.295 29 H -0.304 1.304 30 H 0.029 0.971 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.020 0.980 39 H 0.048 0.952 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.406 0.594 46 H 0.076 0.924 47 H 0.044 0.956 48 H 0.117 0.883 49 H 0.046 0.954 50 H 0.041 0.959 51 H 0.103 0.897 52 H 0.070 0.930 53 H 0.005 0.995 54 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.862 -3.151 7.615 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.076 4.076 5 N -0.217 5.217 6 C -0.098 4.098 7 C -0.150 4.150 8 C -0.147 4.147 9 C -0.070 4.070 10 H 0.074 0.926 11 C 0.306 3.694 12 O -0.433 6.433 13 N -0.353 5.353 14 C 0.025 3.975 15 C 0.021 3.979 16 H 0.054 0.946 17 C -0.021 4.021 18 O -0.317 6.317 19 C -0.033 4.033 20 C 0.023 3.977 21 N -0.331 5.331 22 C -0.360 4.360 23 H 0.083 0.917 24 C -0.225 4.225 25 N -0.574 5.574 26 Si 0.751 3.249 27 H -0.163 1.163 28 H -0.222 1.222 29 H -0.232 1.232 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.039 0.961 39 H 0.066 0.934 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.241 0.759 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.134 0.866 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.121 0.879 52 H 0.088 0.912 53 H 0.023 0.977 54 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.086 -3.003 7.214 12.758 hybrid contribution 2.192 1.025 0.916 2.588 sum -7.893 -1.978 8.130 11.503 Atomic orbital electron populations 1.21463 0.93740 1.02227 0.99546 1.21037 0.97470 0.95198 0.97243 1.21967 1.00446 0.96130 1.02217 1.22345 0.96626 0.89320 0.99332 1.65122 1.49362 1.01108 1.06075 1.23251 1.01441 0.94689 0.90426 1.22271 1.03125 0.95154 0.94470 1.22236 1.02626 0.92106 0.97702 1.22664 0.95690 0.97315 0.91365 0.92595 1.20371 0.85353 0.76661 0.86975 1.90618 1.19829 1.47423 1.85476 1.46023 1.15208 1.68502 1.05537 1.20988 0.95435 1.00276 0.80793 1.21552 0.88783 0.93289 0.94298 0.94553 1.22983 0.88116 1.01972 0.89043 1.87800 1.32028 1.52867 1.58967 1.23233 0.91196 0.90337 0.98508 1.21287 0.90072 0.99608 0.86747 1.44259 1.20262 1.41510 1.27091 1.19172 0.93181 1.19421 1.04220 0.91707 1.25738 0.96185 1.00839 0.99763 1.70066 0.97761 1.48004 1.41553 0.85937 0.79244 0.78590 0.81122 1.16254 1.22185 1.23215 0.95137 0.91744 0.92658 0.93850 0.93883 0.92991 0.90858 0.88859 0.96124 0.93384 0.88278 0.89893 0.89051 0.91245 0.89518 0.75853 0.90575 0.93736 0.86551 0.93519 0.94063 0.87935 0.91212 0.97713 0.94288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.48 8.40 71.98 0.60 -2.88 16 2 C -0.09 -2.99 2.41 -10.80 -0.03 -3.02 16 3 C -0.15 -4.56 9.17 71.98 0.66 -3.90 16 4 C 0.05 1.53 4.28 86.30 0.37 1.90 16 5 N -0.49 -14.01 3.94 -861.05 -3.39 -17.40 16 6 C 0.03 0.61 6.43 86.45 0.56 1.17 16 7 C -0.11 -2.07 7.00 31.49 0.22 -1.85 16 8 C -0.11 -2.57 6.54 31.49 0.21 -2.37 16 9 C 0.04 1.28 2.66 44.32 0.12 1.39 16 10 H 0.06 1.86 7.70 -2.38 -0.02 1.84 16 11 C 0.52 18.63 4.97 87.66 0.44 19.07 16 12 O -0.55 -22.19 13.33 -3.06 -0.04 -22.23 16 13 N -0.70 -25.68 3.90 -463.06 -1.80 -27.48 16 14 C 0.15 5.36 4.45 86.38 0.38 5.75 16 15 C 0.13 4.80 3.20 44.97 0.14 4.94 16 16 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 17 C 0.06 1.91 6.29 72.08 0.45 2.37 16 18 O -0.40 -14.74 10.74 -148.98 -1.60 -16.34 16 19 C 0.05 1.69 6.98 72.08 0.50 2.20 16 20 C 0.15 6.78 5.36 86.35 0.46 7.24 16 21 N -0.61 -27.49 3.04 -673.71 -2.05 -29.53 16 22 C -0.23 -11.20 6.92 84.03 0.58 -10.62 16 23 H 0.07 3.26 6.05 -2.91 -0.02 3.24 16 24 C -0.03 -1.48 5.28 84.86 0.45 -1.03 16 25 N -0.93 -50.64 10.86 21.65 0.24 -50.40 16 26 Si 0.92 41.45 29.55 68.60 2.03 43.48 16 27 H -0.24 -10.06 4.71 99.48 0.47 -9.60 16 28 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 29 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 30 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 2.22 6.33 -2.39 -0.02 2.20 16 32 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.04 1.75 5.28 -2.39 -0.01 1.74 16 34 H 0.04 1.43 5.77 -2.39 -0.01 1.42 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 2.30 8.03 -2.38 -0.02 2.28 16 38 H 0.02 0.66 7.68 -2.39 -0.02 0.64 16 39 H 0.05 0.97 8.00 -2.39 -0.02 0.95 16 40 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.75 7.86 -2.39 -0.02 1.73 16 44 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.41 15.80 7.39 -92.70 -0.69 15.12 16 46 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.04 1.78 7.50 -2.39 -0.02 1.77 16 48 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 49 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 52 H 0.07 3.58 6.29 -2.38 -0.01 3.57 16 53 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 54 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 Total: -1.00 -60.32 398.90 -0.55 -60.87 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.05 Total: 38.69 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 6.12 Total: 20.36 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -7.01 Total: -124.82 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.64 Total: -38.57 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -60.32 -0.55 -60.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050999401.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.414 kcal (2) G-P(sol) polarization free energy of solvation -60.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds