Wall clock time and date at job start Tue Mar 31 2020 23:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46830 * 2 1 4 4 C 1.53000 * 109.47615 * 119.99998 * 2 1 3 5 5 N 1.46904 * 109.46863 * 65.16950 * 4 2 1 6 6 C 1.47443 * 110.99896 * 74.63215 * 5 4 2 7 7 C 1.54314 * 107.23369 * 123.25709 * 6 5 4 8 8 C 1.55140 * 103.01864 * 22.28127 * 7 6 5 9 9 C 1.47851 * 110.99738 * 195.47249 * 5 4 2 10 10 H 1.09003 * 110.37169 * 332.58216 * 9 5 4 11 11 C 1.50704 * 110.37131 * 94.80932 * 9 5 4 12 12 O 1.21280 * 120.00294 * 359.97438 * 11 9 5 13 13 N 1.34773 * 119.99564 * 179.97438 * 11 9 5 14 14 C 1.46503 * 119.99708 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.46796 * 180.02562 * 14 13 11 16 16 H 1.08992 * 109.68278 * 301.02803 * 15 14 13 17 17 C 1.53304 * 109.68086 * 180.51615 * 15 14 13 18 18 O 1.42954 * 109.26526 * 187.91150 * 17 15 14 19 19 C 1.43053 * 114.11120 * 62.54838 * 18 17 15 20 20 C 1.53291 * 109.25312 * 297.45851 * 19 18 17 21 21 N 1.47145 * 109.71680 * 61.57488 * 15 14 13 22 22 C 1.36941 * 120.97981 * 350.29128 * 21 15 14 23 23 H 1.08001 * 120.00010 * 31.24992 * 22 21 15 24 24 C 1.38811 * 120.00269 * 211.24574 * 22 21 15 25 25 N 1.31618 * 120.00037 * 10.29534 * 24 22 21 26 26 Si 1.86797 * 120.00229 * 190.29571 * 24 22 21 27 27 H 1.48509 * 109.46810 * 90.00294 * 26 24 22 28 28 H 1.48499 * 109.47461 * 209.99731 * 26 24 22 29 29 H 1.48491 * 109.47289 * 330.00395 * 26 24 22 30 30 H 1.08998 * 109.47198 * 299.99633 * 1 2 3 31 31 H 1.08995 * 109.47417 * 60.00109 * 1 2 3 32 32 H 1.09004 * 109.46827 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47198 * 240.00367 * 2 1 3 34 34 H 1.09001 * 109.47114 * 175.19671 * 3 2 1 35 35 H 1.08999 * 109.46745 * 295.19565 * 3 2 1 36 36 H 1.08999 * 109.47032 * 55.19400 * 3 2 1 37 37 H 1.08998 * 109.46878 * 305.17126 * 4 2 1 38 38 H 1.08998 * 109.47578 * 185.17074 * 4 2 1 39 39 H 1.08997 * 109.88571 * 242.66271 * 6 5 4 40 40 H 1.08998 * 109.88845 * 3.84740 * 6 5 4 41 41 H 1.09000 * 110.70768 * 140.66533 * 7 6 5 42 42 H 1.09001 * 110.70118 * 263.90166 * 7 6 5 43 43 H 1.09006 * 110.98862 * 206.26037 * 8 7 6 44 44 H 1.08994 * 110.99029 * 82.44237 * 8 7 6 45 45 H 0.96996 * 120.00601 * 359.97438 * 13 11 9 46 46 H 1.08994 * 109.47282 * 59.99996 * 14 13 11 47 47 H 1.09006 * 109.47149 * 299.99713 * 14 13 11 48 48 H 1.09003 * 109.50967 * 307.86465 * 17 15 14 49 49 H 1.09005 * 109.51050 * 67.95944 * 17 15 14 50 50 H 1.08997 * 109.49382 * 177.52534 * 19 18 17 51 51 H 1.08999 * 109.53947 * 57.41797 * 19 18 17 52 52 H 1.08998 * 109.68224 * 292.58135 * 20 19 18 53 53 H 1.09003 * 109.68011 * 172.02809 * 20 19 18 54 54 H 0.97002 * 120.00841 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6550 -2.1376 1.1884 6 6 2.4893 -2.8708 0.2188 7 6 3.1554 -4.0371 0.9787 8 6 2.2196 -4.2384 2.1996 9 6 1.7947 -2.7819 2.5118 10 1 2.5623 -2.2785 3.0997 11 6 0.4783 -2.7651 3.2451 12 8 -0.4980 -2.2653 2.7274 13 7 0.3859 -3.3055 4.4763 14 6 -0.8940 -3.2896 5.1890 15 6 -0.7260 -3.9604 6.5538 16 1 -0.3829 -4.9861 6.4190 17 6 -2.0659 -3.9580 7.2987 18 8 -1.8622 -4.4160 8.6375 19 6 -0.9987 -3.5819 9.4154 20 6 0.3958 -3.5651 8.7790 21 7 0.2530 -3.2118 7.3577 22 6 1.0088 -2.2155 6.7996 23 1 0.6090 -1.6237 5.9895 24 6 2.2888 -1.9661 7.2753 25 7 2.8539 -2.8065 8.1159 26 14 3.2094 -0.4376 6.7223 27 1 2.9141 0.6817 7.6526 28 1 4.6690 -0.7109 6.7245 29 1 2.7769 -0.0684 5.3506 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1265 1.4438 0.0861 35 1 1.7485 1.9309 -0.9299 36 1 1.6079 1.9806 0.8438 37 1 1.6031 -0.2637 2.1368 38 1 3.1261 -0.6417 1.2967 39 1 1.8664 -3.2605 -0.5863 40 1 3.2536 -2.2088 -0.1881 41 1 3.1814 -4.9348 0.3609 42 1 4.1589 -3.7623 1.3034 43 1 2.7611 -4.6754 3.0387 44 1 1.3565 -4.8485 1.9336 45 1 1.1665 -3.7055 4.8903 46 1 -1.6405 -3.8305 4.6073 47 1 -1.2194 -2.2587 5.3288 48 1 -2.4701 -2.9458 7.3176 49 1 -2.7665 -4.6203 6.7899 50 1 -0.9311 -3.9744 10.4300 51 1 -1.3986 -2.5683 9.4429 52 1 0.8520 -4.5510 8.8681 53 1 1.0192 -2.8249 9.2805 54 1 3.7483 -2.6321 8.4486 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050999404.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:29 Heat of formation + Delta-G solvation = -72.999532 kcal Electronic energy + Delta-G solvation = -32314.108741 eV Core-core repulsion = 28285.699647 eV Total energy + Delta-G solvation = -4028.409094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.24105 -40.19084 -39.10332 -36.86584 -36.55904 -35.25053 -33.30409 -32.24623 -31.96611 -30.46245 -28.96568 -27.95504 -26.92964 -26.34143 -25.24710 -23.75919 -22.82242 -22.38718 -21.42284 -20.71396 -20.47200 -18.78366 -18.03471 -17.58217 -17.45751 -17.08154 -16.37254 -16.26930 -16.13619 -15.96764 -15.67763 -15.44163 -15.26244 -15.12538 -14.84856 -14.48463 -14.28833 -14.17208 -13.91812 -13.78223 -13.50401 -13.15293 -13.13846 -12.92520 -12.78345 -12.76522 -12.66158 -12.53521 -12.46817 -12.15664 -12.11430 -11.99970 -11.86185 -11.82410 -11.68475 -11.58509 -11.47340 -11.31105 -10.81571 -10.58705 -10.50587 -9.78135 -9.25412 -8.62353 -7.87761 -5.38607 1.36434 1.42686 1.47141 1.82225 2.23635 2.42861 3.00245 3.09467 3.28155 3.44091 3.57655 3.65443 3.89374 3.95399 4.04825 4.08076 4.13208 4.20484 4.24512 4.28654 4.35338 4.47478 4.51452 4.56738 4.61018 4.64463 4.64775 4.66587 4.73043 4.76217 4.82380 4.83141 4.92042 4.93704 5.00678 5.03927 5.06643 5.09071 5.12036 5.22919 5.29726 5.30921 5.43730 5.56170 5.60620 5.66549 5.70578 5.90487 6.13464 6.28891 6.37129 6.80398 7.10657 7.46874 7.75934 8.32204 9.16549 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.003870 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.015654 B = 7233.473704 C = 7933.686181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.080 4.080 3 C -0.145 4.145 4 C 0.059 3.941 5 N -0.516 5.516 6 C 0.043 3.957 7 C -0.131 4.131 8 C -0.113 4.113 9 C 0.054 3.946 10 H 0.066 0.934 11 C 0.515 3.485 12 O -0.569 6.569 13 N -0.699 5.699 14 C 0.146 3.854 15 C 0.128 3.872 16 H 0.038 0.962 17 C 0.057 3.943 18 O -0.397 6.397 19 C 0.045 3.955 20 C 0.150 3.850 21 N -0.605 5.605 22 C -0.236 4.236 23 H 0.065 0.935 24 C -0.030 4.030 25 N -0.925 5.925 26 Si 0.941 3.059 27 H -0.293 1.293 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.027 0.973 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.038 0.962 38 H 0.042 0.958 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.408 0.592 46 H 0.076 0.924 47 H 0.044 0.956 48 H 0.047 0.953 49 H 0.117 0.883 50 H 0.105 0.895 51 H 0.042 0.958 52 H 0.008 0.992 53 H 0.066 0.934 54 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 -1.074 -13.233 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.099 4.099 3 C -0.203 4.203 4 C -0.069 4.069 5 N -0.240 5.240 6 C -0.084 4.084 7 C -0.169 4.169 8 C -0.151 4.151 9 C -0.058 4.058 10 H 0.084 0.916 11 C 0.301 3.699 12 O -0.448 6.448 13 N -0.351 5.351 14 C 0.022 3.978 15 C 0.022 3.978 16 H 0.056 0.944 17 C -0.022 4.022 18 O -0.315 6.315 19 C -0.032 4.032 20 C 0.024 3.976 21 N -0.331 5.331 22 C -0.367 4.367 23 H 0.083 0.917 24 C -0.227 4.227 25 N -0.571 5.571 26 Si 0.771 3.229 27 H -0.220 1.220 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.245 0.755 46 H 0.095 0.905 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.135 0.865 50 H 0.123 0.877 51 H 0.060 0.940 52 H 0.026 0.974 53 H 0.084 0.916 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.463 -0.880 -13.623 13.730 hybrid contribution 1.989 1.171 0.848 2.458 sum 0.526 0.291 -12.775 12.789 Atomic orbital electron populations 1.21577 0.95189 1.01551 1.00055 1.21027 0.96142 0.95873 0.96866 1.21821 1.01069 0.95203 1.02160 1.22354 0.97456 0.88357 0.98759 1.63038 1.54270 1.02026 1.04699 1.22965 0.95129 0.95207 0.95143 1.22779 0.98387 0.99673 0.96076 1.22648 1.00240 0.92479 0.99754 1.22426 0.93376 0.98187 0.91762 0.91615 1.20681 0.90612 0.77502 0.81080 1.90599 1.39621 1.46458 1.68108 1.45972 1.13490 1.59584 1.16013 1.21029 0.85844 0.99817 0.91142 1.21532 0.91366 0.94544 0.90389 0.94389 1.22986 0.96089 1.00072 0.83011 1.87826 1.67654 1.52034 1.24013 1.23237 0.90995 0.93957 0.95056 1.21237 0.93479 0.98108 0.84742 1.44293 1.44006 1.39572 1.05222 1.19215 0.93349 1.07816 1.16280 0.91749 1.25556 0.96960 0.99720 1.00426 1.70081 1.14718 1.36336 1.35961 0.85675 0.78121 0.80997 0.78089 1.22010 1.21725 1.20352 0.95364 0.92166 0.93118 0.89996 0.92124 0.90958 0.93819 0.94293 0.93992 0.89825 0.91223 0.88221 0.90610 0.89467 0.90460 0.75518 0.90548 0.93777 0.93464 0.86489 0.87737 0.93954 0.97411 0.91577 0.94055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 9.08 71.98 0.65 -2.73 16 2 C -0.08 -1.88 2.95 -10.79 -0.03 -1.91 16 3 C -0.14 -2.89 9.19 71.98 0.66 -2.23 16 4 C 0.06 1.66 3.96 86.30 0.34 2.00 16 5 N -0.52 -14.74 3.76 -864.97 -3.26 -18.00 16 6 C 0.04 0.89 6.21 86.65 0.54 1.43 16 7 C -0.13 -2.44 6.94 31.77 0.22 -2.22 16 8 C -0.11 -2.74 6.47 31.98 0.21 -2.53 16 9 C 0.05 1.70 2.76 44.64 0.12 1.82 16 10 H 0.07 2.21 7.81 -2.39 -0.02 2.20 16 11 C 0.52 19.41 7.19 87.66 0.63 20.04 16 12 O -0.57 -24.65 16.49 -3.03 -0.05 -24.70 16 13 N -0.70 -26.20 3.80 -463.05 -1.76 -27.96 16 14 C 0.15 5.36 4.44 86.38 0.38 5.75 16 15 C 0.13 4.86 3.20 44.97 0.14 5.00 16 16 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 17 C 0.06 1.90 6.28 72.08 0.45 2.35 16 18 O -0.40 -14.58 10.75 -148.98 -1.60 -16.18 16 19 C 0.05 1.68 6.98 72.08 0.50 2.19 16 20 C 0.15 6.79 5.38 86.35 0.46 7.25 16 21 N -0.61 -27.61 3.03 -673.75 -2.04 -29.65 16 22 C -0.24 -11.66 7.12 84.03 0.60 -11.07 16 23 H 0.06 3.29 5.82 -2.91 -0.02 3.27 16 24 C -0.03 -1.54 5.07 84.86 0.43 -1.11 16 25 N -0.93 -49.97 11.11 21.65 0.24 -49.73 16 26 Si 0.94 42.87 29.57 68.60 2.03 44.89 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 28 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 29 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 30 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.57 7.76 -2.38 -0.02 1.56 16 33 H 0.08 1.67 7.39 -2.39 -0.02 1.65 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.04 1.35 8.01 -2.39 -0.02 1.33 16 38 H 0.04 1.08 7.81 -2.39 -0.02 1.06 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.26 7.16 -2.39 -0.02 1.24 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.09 2.04 8.14 -2.38 -0.02 2.03 16 44 H 0.08 1.92 8.05 -2.39 -0.02 1.90 16 45 H 0.41 15.95 7.41 -92.71 -0.69 15.26 16 46 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.04 1.81 7.51 -2.38 -0.02 1.79 16 48 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.12 3.12 8.14 -2.38 -0.02 3.10 16 50 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 51 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 53 H 0.07 3.35 6.32 -2.39 -0.02 3.33 16 54 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 Total: -1.00 -61.80 412.68 0.05 -61.75 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.17 Total: 35.52 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: 6.32 Total: 24.05 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -6.82 Total: -125.34 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -1.65 Total: -40.88 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -61.80 0.05 -61.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050999404.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.249 kcal (2) G-P(sol) polarization free energy of solvation -61.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds