Wall clock time and date at job start Tue Mar 31 2020 23:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46816 * 2 1 4 4 C 1.52992 * 109.47257 * 119.99676 * 2 1 3 5 5 N 1.46899 * 109.47731 * 175.32442 * 4 2 1 6 6 C 1.47439 * 111.00756 * 172.79845 * 5 4 2 7 7 C 1.54310 * 107.23304 * 123.25581 * 6 5 4 8 8 C 1.55142 * 103.02166 * 22.28870 * 7 6 5 9 9 C 1.47847 * 111.00044 * 293.64691 * 5 4 2 10 10 H 1.09001 * 110.36871 * 332.57532 * 9 5 4 11 11 C 1.50697 * 110.37404 * 94.80086 * 9 5 4 12 12 O 1.21278 * 120.00543 * 25.98802 * 11 9 5 13 13 N 1.34784 * 119.99806 * 205.98785 * 11 9 5 14 14 C 1.46500 * 119.99780 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.47029 * 179.97438 * 14 13 11 16 16 H 1.09006 * 109.67359 * 59.73047 * 15 14 13 17 17 C 1.53296 * 109.71268 * 180.26609 * 15 14 13 18 18 O 1.42967 * 109.22039 * 172.04321 * 17 15 14 19 19 C 1.42953 * 114.16881 * 297.42194 * 18 17 15 20 20 C 1.52884 * 109.29879 * 62.45181 * 19 18 17 21 21 N 1.47148 * 108.60407 * 307.93308 * 20 19 18 22 22 C 1.36939 * 120.98255 * 230.49934 * 21 20 19 23 23 H 1.07995 * 119.99991 * 150.61475 * 22 21 20 24 24 C 1.38807 * 119.99891 * 330.89482 * 22 21 20 25 25 N 1.31624 * 120.00413 * 346.11607 * 24 22 21 26 26 Si 1.86807 * 120.00303 * 166.11851 * 24 22 21 27 27 H 1.48501 * 109.47079 * 89.99717 * 26 24 22 28 28 H 1.48493 * 109.47328 * 210.00081 * 26 24 22 29 29 H 1.48507 * 109.46871 * 329.99884 * 26 24 22 30 30 H 1.08996 * 109.46986 * 300.00213 * 1 2 3 31 31 H 1.09007 * 109.46849 * 60.00405 * 1 2 3 32 32 H 1.09000 * 109.46903 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47395 * 240.00137 * 2 1 3 34 34 H 1.09002 * 109.47198 * 292.00942 * 3 2 1 35 35 H 1.08997 * 109.47138 * 52.01295 * 3 2 1 36 36 H 1.09006 * 109.47175 * 172.01446 * 3 2 1 37 37 H 1.09006 * 109.47145 * 55.32467 * 4 2 1 38 38 H 1.09006 * 109.47207 * 295.32676 * 4 2 1 39 39 H 1.08997 * 109.88862 * 242.66626 * 6 5 4 40 40 H 1.09000 * 109.88228 * 3.85129 * 6 5 4 41 41 H 1.09002 * 110.70643 * 140.67049 * 7 6 5 42 42 H 1.09000 * 110.71186 * 263.90036 * 7 6 5 43 43 H 1.08994 * 110.99338 * 206.25293 * 8 7 6 44 44 H 1.09004 * 110.98761 * 82.43430 * 8 7 6 45 45 H 0.96997 * 119.99809 * 0.02562 * 13 11 9 46 46 H 1.09002 * 109.46928 * 60.00165 * 14 13 11 47 47 H 1.08997 * 109.47526 * 300.00042 * 14 13 11 48 48 H 1.08992 * 109.51607 * 291.96946 * 17 15 14 49 49 H 1.08996 * 109.51169 * 52.12626 * 17 15 14 50 50 H 1.09006 * 109.51537 * 182.50372 * 19 18 17 51 51 H 1.08994 * 109.51595 * 302.60496 * 19 18 17 52 52 H 1.08994 * 109.61836 * 188.11436 * 20 19 18 53 53 H 1.08996 * 109.52309 * 67.69812 * 20 19 18 54 54 H 0.96999 * 120.00651 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 3.5047 -0.8197 1.1942 6 6 4.0462 -1.3542 2.4571 7 6 4.8695 -2.6112 2.1057 8 6 5.2179 -2.3939 0.6096 9 6 3.9352 -1.7002 0.0873 10 1 3.1644 -2.4391 -0.1316 11 6 4.2432 -0.8849 -1.1421 12 8 4.5829 0.2741 -1.0319 13 7 4.1412 -1.4439 -2.3644 14 6 4.4401 -0.6512 -3.5596 15 6 4.2488 -1.5167 -4.8066 16 1 3.2194 -1.8725 -4.8520 17 6 4.5666 -0.6943 -6.0606 18 8 4.5660 -1.5561 -7.2013 19 6 5.5631 -2.5797 -7.1621 20 6 5.3005 -3.4954 -5.9663 21 7 5.1682 -2.6647 -4.7590 22 6 5.8839 -2.9481 -3.6264 23 1 6.1658 -2.1526 -2.9526 24 6 6.2520 -4.2570 -3.3475 25 7 5.6951 -5.2518 -4.0053 26 14 7.5379 -4.6069 -2.0384 27 1 6.8712 -4.7764 -0.7224 28 1 8.2719 -5.8503 -2.3853 29 1 8.4930 -3.4720 -1.9669 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.7979 1.9135 -0.9528 35 1 1.5647 1.9959 0.8099 36 1 3.1206 1.4460 0.1428 37 1 1.6099 -1.7218 1.2921 38 1 1.7467 -0.1612 2.1372 39 1 4.6880 -0.6106 2.9295 40 1 3.2291 -1.6215 3.1272 41 1 5.7759 -2.6594 2.7094 42 1 4.2708 -3.5128 2.2351 43 1 5.3804 -3.3459 0.1043 44 1 6.0856 -1.7431 0.5014 45 1 3.8692 -2.3707 -2.4526 46 1 5.4716 -0.3016 -3.5151 47 1 3.7678 0.2056 -3.6049 48 1 3.8108 0.0804 -6.1892 49 1 5.5481 -0.2324 -5.9539 50 1 5.5242 -3.1614 -8.0831 51 1 6.5483 -2.1246 -7.0604 52 1 6.1334 -4.1880 -5.8459 53 1 4.3789 -4.0537 -6.1306 54 1 5.9521 -6.1666 -3.8101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050999406.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:33 Heat of formation + Delta-G solvation = -68.811757 kcal Electronic energy + Delta-G solvation = -32872.885279 eV Core-core repulsion = 28844.657781 eV Total energy + Delta-G solvation = -4028.227498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.34903 -40.21060 -38.96842 -36.84490 -36.56674 -35.21838 -33.28118 -32.23966 -32.01708 -30.48002 -28.97086 -27.89285 -26.97922 -26.28193 -25.23487 -23.78695 -22.90556 -22.02576 -21.40531 -20.97895 -20.51776 -18.80220 -17.96215 -17.62116 -17.34039 -17.07746 -16.33766 -16.28228 -16.20071 -15.90053 -15.78436 -15.36603 -15.18065 -14.96401 -14.71165 -14.57363 -14.41685 -14.32319 -14.08177 -13.56614 -13.31240 -13.16112 -13.02330 -12.94767 -12.89637 -12.75214 -12.65623 -12.46770 -12.30731 -12.20123 -12.07966 -11.98474 -11.87192 -11.81861 -11.72744 -11.57007 -11.37052 -11.29383 -10.80995 -10.53840 -10.47159 -9.73090 -9.22466 -8.62892 -7.85304 -5.32959 1.39799 1.46813 1.52770 1.83487 2.24931 2.47134 3.00898 3.14021 3.30822 3.45004 3.56685 3.69033 3.87887 3.97258 4.04963 4.08849 4.13603 4.18450 4.23825 4.33365 4.36288 4.47367 4.49153 4.56637 4.61461 4.64186 4.66692 4.69528 4.72127 4.77074 4.82548 4.85584 4.87917 4.92317 5.00324 5.00955 5.08312 5.11690 5.15468 5.25074 5.30307 5.30966 5.44474 5.59189 5.64056 5.71198 5.76427 5.91593 6.15623 6.29258 6.37621 6.82529 7.12376 7.51187 7.78965 8.34277 9.19816 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010698 B = 0.004786 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.709994 B = 5848.988554 C = 7749.180039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.134 4.134 4 C 0.058 3.942 5 N -0.521 5.521 6 C 0.048 3.952 7 C -0.131 4.131 8 C -0.123 4.123 9 C 0.065 3.935 10 H 0.074 0.926 11 C 0.521 3.479 12 O -0.561 6.561 13 N -0.703 5.703 14 C 0.148 3.852 15 C 0.127 3.873 16 H 0.035 0.965 17 C 0.058 3.942 18 O -0.397 6.397 19 C 0.046 3.954 20 C 0.148 3.852 21 N -0.604 5.604 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.032 4.032 25 N -0.927 5.927 26 Si 0.935 3.065 27 H -0.267 1.267 28 H -0.300 1.300 29 H -0.286 1.286 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.033 0.967 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.407 0.593 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.116 0.884 49 H 0.048 0.952 50 H 0.105 0.895 51 H 0.042 0.958 52 H 0.066 0.934 53 H 0.006 0.994 54 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.571 6.494 8.864 13.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.191 4.191 4 C -0.069 4.069 5 N -0.246 5.246 6 C -0.079 4.079 7 C -0.170 4.170 8 C -0.162 4.162 9 C -0.047 4.047 10 H 0.092 0.908 11 C 0.307 3.693 12 O -0.440 6.440 13 N -0.354 5.354 14 C 0.024 3.976 15 C 0.021 3.979 16 H 0.053 0.947 17 C -0.021 4.021 18 O -0.316 6.316 19 C -0.032 4.032 20 C 0.023 3.977 21 N -0.329 5.329 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.228 4.228 25 N -0.574 5.574 26 Si 0.765 3.235 27 H -0.193 1.193 28 H -0.226 1.226 29 H -0.211 1.211 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.243 0.757 46 H 0.064 0.936 47 H 0.092 0.908 48 H 0.134 0.866 49 H 0.066 0.934 50 H 0.123 0.877 51 H 0.061 0.939 52 H 0.085 0.915 53 H 0.024 0.976 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.252 7.690 8.743 13.717 hybrid contribution 0.766 -1.972 0.474 2.168 sum -6.485 5.718 9.217 12.638 Atomic orbital electron populations 1.21765 0.93550 1.01973 1.02377 1.21091 0.96234 0.96951 0.96995 1.21694 1.02441 0.94968 0.99983 1.22446 0.86081 0.99235 0.99168 1.63099 1.10863 1.48407 1.02185 1.22850 0.98904 0.95424 0.90748 1.22780 1.01454 0.98681 0.94045 1.22666 0.95936 0.99916 0.97643 1.22349 0.98403 0.92783 0.91172 0.90850 1.20497 0.77058 0.87327 0.84425 1.90573 1.48297 1.18204 1.86889 1.46052 1.68336 1.15939 1.05093 1.20996 0.99893 0.93103 0.83650 1.21523 0.93419 0.89039 0.93921 0.94726 1.22981 1.01861 0.91957 0.85299 1.87804 1.57043 1.44773 1.41981 1.23139 0.90456 0.89782 0.99777 1.21155 0.99286 0.92350 0.84922 1.44288 1.47694 1.30563 1.10389 1.19292 1.26105 0.91120 1.00191 0.91245 1.25505 1.01276 0.95878 1.00175 1.70119 1.44011 0.98295 1.44935 0.85796 0.80265 0.76534 0.80933 1.19293 1.22636 1.21139 0.91324 0.92704 0.92450 0.93976 0.94788 0.92504 0.91999 0.94051 0.89015 0.90193 0.90308 0.89124 0.90088 0.91095 0.92025 0.75708 0.93569 0.90820 0.86603 0.93362 0.87739 0.93922 0.91525 0.97603 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.19 71.98 0.66 -2.02 16 2 C -0.09 -2.32 2.51 -10.79 -0.03 -2.35 16 3 C -0.13 -3.62 8.81 71.98 0.63 -2.98 16 4 C 0.06 1.31 3.91 86.30 0.34 1.65 16 5 N -0.52 -14.01 3.84 -865.02 -3.32 -17.33 16 6 C 0.05 1.02 6.88 86.64 0.60 1.62 16 7 C -0.13 -2.93 6.94 31.77 0.22 -2.70 16 8 C -0.12 -3.77 6.48 31.98 0.21 -3.56 16 9 C 0.06 2.00 2.37 44.64 0.11 2.10 16 10 H 0.07 2.18 7.67 -2.39 -0.02 2.16 16 11 C 0.52 19.01 5.00 87.65 0.44 19.45 16 12 O -0.56 -23.20 14.35 -3.02 -0.04 -23.25 16 13 N -0.70 -26.12 3.74 -463.06 -1.73 -27.86 16 14 C 0.15 5.40 4.44 86.38 0.38 5.78 16 15 C 0.13 4.85 3.21 44.97 0.14 4.99 16 16 H 0.04 1.38 8.14 -2.38 -0.02 1.37 16 17 C 0.06 1.93 6.29 72.08 0.45 2.38 16 18 O -0.40 -14.67 10.74 -148.98 -1.60 -16.27 16 19 C 0.05 1.72 6.97 71.94 0.50 2.22 16 20 C 0.15 6.74 5.38 86.22 0.46 7.20 16 21 N -0.60 -27.45 3.04 -674.54 -2.05 -29.50 16 22 C -0.24 -11.58 7.15 84.03 0.60 -10.98 16 23 H 0.07 3.47 5.71 -2.91 -0.02 3.45 16 24 C -0.03 -1.63 5.00 84.86 0.42 -1.21 16 25 N -0.93 -50.12 11.17 21.65 0.24 -49.88 16 26 Si 0.94 41.93 29.55 68.60 2.03 43.96 16 27 H -0.27 -11.22 6.45 99.48 0.64 -10.58 16 28 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.04 1.26 6.00 -2.39 -0.01 1.24 16 34 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 36 H 0.06 2.07 5.53 -2.38 -0.01 2.06 16 37 H 0.04 0.86 7.93 -2.38 -0.02 0.85 16 38 H 0.09 1.76 8.10 -2.38 -0.02 1.74 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 1.31 7.58 -2.39 -0.02 1.29 16 41 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.07 2.38 7.46 -2.39 -0.02 2.36 16 44 H 0.06 2.10 8.05 -2.39 -0.02 2.08 16 45 H 0.41 16.07 7.34 -92.71 -0.68 15.39 16 46 H 0.05 1.86 7.57 -2.39 -0.02 1.85 16 47 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 48 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 49 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 51 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 52 H 0.07 3.37 6.27 -2.39 -0.01 3.36 16 53 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 54 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 Total: -1.00 -60.00 403.26 -0.21 -60.21 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: 0.12 Total: 38.34 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 6.15 Total: 21.58 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -6.86 Total: -124.57 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -1.64 Total: -39.52 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -60.00 -0.21 -60.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050999406.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.606 kcal (2) G-P(sol) polarization free energy of solvation -59.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds