Wall clock time and date at job start Tue Mar 31 2020 23:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99770 * 2 1 4 4 H 1.09002 * 109.47187 * 339.93605 * 3 2 1 5 5 C 1.50707 * 109.46901 * 219.94109 * 3 2 1 6 6 O 1.21277 * 119.99746 * 345.82086 * 5 3 2 7 7 N 1.34779 * 119.99699 * 165.82232 * 5 3 2 8 8 C 1.47018 * 125.65116 * 5.20557 * 7 5 3 9 9 C 1.54322 * 107.27502 * 178.90526 * 8 7 5 10 10 C 1.55163 * 102.93805 * 337.80600 * 9 8 7 11 11 H 1.08997 * 111.03558 * 277.41447 * 10 9 8 12 12 N 1.46901 * 111.00349 * 153.57560 * 10 9 8 13 13 C 1.46900 * 110.99929 * 77.80456 * 12 10 9 14 14 C 1.53239 * 109.33806 * 187.25379 * 13 12 10 15 15 N 1.47079 * 108.52488 * 306.16868 * 14 13 12 16 16 C 1.36927 * 120.88231 * 231.19224 * 15 14 13 17 17 H 1.08002 * 120.00430 * 31.35982 * 16 15 14 18 18 C 1.38811 * 119.99883 * 211.64312 * 16 15 14 19 19 N 1.31616 * 120.00036 * 10.26475 * 18 16 15 20 20 Si 1.86802 * 120.00058 * 190.26944 * 18 16 15 21 21 H 1.48499 * 109.47070 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47145 * 119.99879 * 20 18 16 23 23 H 1.48500 * 109.47056 * 239.99561 * 20 18 16 24 24 C 1.47080 * 118.23348 * 51.45333 * 15 14 13 25 25 C 1.46895 * 110.99982 * 202.10468 * 12 10 9 26 26 C 1.47423 * 125.64414 * 185.16056 * 7 5 3 27 27 C 1.53001 * 109.46984 * 99.93970 * 3 2 1 28 28 C 1.52997 * 109.47411 * 299.19921 * 27 3 2 29 29 C 1.53004 * 109.47034 * 59.20400 * 27 3 2 30 30 H 1.08997 * 109.47439 * 65.16661 * 1 2 3 31 31 H 1.09003 * 109.47232 * 185.16628 * 1 2 3 32 32 H 1.08996 * 109.46954 * 305.16570 * 1 2 3 33 33 H 1.09002 * 109.87883 * 298.32215 * 8 7 5 34 34 H 1.09007 * 109.88489 * 59.32989 * 8 7 5 35 35 H 1.08998 * 110.72323 * 219.44398 * 9 8 7 36 36 H 1.08998 * 110.71997 * 96.16287 * 9 8 7 37 37 H 1.08997 * 109.49729 * 67.29200 * 13 12 10 38 38 H 1.09004 * 109.49256 * 307.20937 * 13 12 10 39 39 H 1.09000 * 109.62725 * 186.45462 * 14 13 12 40 40 H 1.09003 * 109.78878 * 65.97308 * 14 13 12 41 41 H 0.96999 * 120.00383 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.62670 * 68.26098 * 24 15 14 43 43 H 1.08998 * 109.62673 * 188.83239 * 24 15 14 44 44 H 1.09003 * 109.49546 * 292.70518 * 25 12 10 45 45 H 1.08997 * 109.49413 * 52.78504 * 25 12 10 46 46 H 1.09005 * 110.36652 * 85.33082 * 26 7 5 47 47 H 1.09000 * 110.46430 * 323.04781 * 26 7 5 48 48 H 1.09004 * 109.46806 * 179.20072 * 27 3 2 49 49 H 1.08998 * 109.47236 * 185.70601 * 28 27 3 50 50 H 1.08995 * 109.46957 * 305.71296 * 28 27 3 51 51 H 1.09001 * 109.46639 * 65.71085 * 28 27 3 52 52 H 1.09002 * 109.47256 * 59.99486 * 29 27 3 53 53 H 1.08999 * 109.47268 * 179.97438 * 29 27 3 54 54 H 1.09001 * 109.46731 * 299.99920 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2761 2.0300 -0.3526 5 6 3.2097 1.3213 -0.9122 6 8 3.6905 0.2775 -1.2999 7 7 3.7481 2.4954 -1.2971 8 6 3.3370 3.8239 -0.8202 9 6 4.2474 4.8608 -1.5112 10 6 5.4917 4.0222 -1.9061 11 1 6.1777 3.9202 -1.0652 12 7 6.1725 4.6060 -3.0696 13 6 6.9790 5.7698 -2.6785 14 6 7.5239 6.4553 -3.9360 15 7 8.2317 5.4520 -4.7457 16 6 9.5059 5.6808 -5.1919 17 1 10.1833 6.2840 -4.6057 18 6 9.9250 5.1422 -6.4007 19 7 9.0504 4.5862 -7.2120 20 14 11.7305 5.2064 -6.8758 21 1 12.5019 5.8790 -5.7998 22 1 12.2424 3.8250 -7.0632 23 1 11.8823 5.9665 -8.1424 24 6 7.5324 4.1990 -5.0682 25 6 6.9893 3.5998 -3.7612 26 6 4.8475 2.6600 -2.2654 27 6 2.4451 1.6701 1.4209 28 6 1.2242 1.6735 2.3429 29 6 3.4607 0.6418 1.9231 30 1 -0.3634 0.4316 -0.9326 31 1 -0.3634 -1.0235 0.0925 32 1 -0.3633 0.5919 0.8401 33 1 2.2963 4.0079 -1.0873 34 1 3.4580 3.8834 0.2615 35 1 4.5222 5.6556 -0.8178 36 1 3.7619 5.2709 -2.3968 37 1 7.8099 5.4430 -2.0533 38 1 6.3584 6.4718 -2.1215 39 1 8.2144 7.2488 -3.6504 40 1 6.7005 6.8767 -4.5128 41 1 9.3434 4.2095 -8.0565 42 1 6.7077 4.4051 -5.7506 43 1 8.2286 3.4999 -5.5315 44 1 7.8202 3.3032 -3.1210 45 1 6.3762 2.7279 -3.9894 46 1 4.4568 2.6818 -3.2828 47 1 5.5751 1.8558 -2.1563 48 1 2.9013 2.6601 1.4184 49 1 1.5157 2.0308 3.3305 50 1 0.4589 2.3306 1.9300 51 1 0.8282 0.6613 2.4251 52 1 4.3305 0.6394 1.2661 53 1 3.7709 0.9018 2.9351 54 1 3.0045 -0.3481 1.9254 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052077204.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:05 Heat of formation + Delta-G solvation = -63.425364 kcal Electronic energy + Delta-G solvation = -31340.091186 eV Core-core repulsion = 27312.097259 eV Total energy + Delta-G solvation = -4027.993927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.63062 -40.17992 -38.91867 -37.96825 -35.94456 -35.45754 -33.38238 -32.06430 -31.43775 -30.12539 -29.15447 -28.15444 -27.63216 -26.47258 -25.08817 -24.45398 -23.58097 -21.63848 -21.58649 -20.85739 -20.41045 -18.83051 -18.36438 -17.91559 -17.34758 -17.03273 -16.74546 -16.47990 -15.93242 -15.79719 -15.44253 -15.30199 -15.21597 -14.96337 -14.81950 -14.73298 -14.53411 -14.16879 -14.00387 -13.85124 -13.55687 -13.31402 -13.19077 -13.06658 -12.99482 -12.75641 -12.64339 -12.53651 -12.43839 -12.29889 -12.20962 -12.05217 -12.02804 -11.95275 -11.79904 -11.57247 -11.42217 -11.33946 -11.05974 -10.62052 -10.40059 -9.73371 -9.31532 -8.62526 -7.88143 -5.39387 1.44644 1.45843 1.47118 1.56413 1.63129 2.48812 2.82314 3.00875 3.28450 3.30210 3.61879 3.66618 3.67027 3.70340 3.83251 4.03416 4.08948 4.20039 4.27540 4.32118 4.33973 4.38620 4.48059 4.53456 4.54142 4.56928 4.61005 4.69189 4.69965 4.78395 4.79932 4.83812 4.85611 4.89808 4.90779 4.97089 4.99842 5.11251 5.12901 5.14972 5.23384 5.29736 5.34834 5.37875 5.42259 5.61079 5.67693 6.05784 6.12053 6.24528 6.39295 6.44783 7.05526 7.13629 7.82830 8.38634 9.18218 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.002265 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.368223 B =12357.047817 C =12785.726443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.387 6.387 3 C 0.087 3.913 4 H 0.114 0.886 5 C 0.519 3.481 6 O -0.578 6.578 7 N -0.615 5.615 8 C 0.095 3.905 9 C -0.110 4.110 10 C 0.071 3.929 11 H 0.055 0.945 12 N -0.524 5.524 13 C 0.058 3.942 14 C 0.144 3.856 15 N -0.615 5.615 16 C -0.262 4.262 17 H 0.067 0.933 18 C -0.052 4.052 19 N -0.937 5.937 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.292 1.292 23 H -0.290 1.290 24 C 0.190 3.810 25 C 0.048 3.952 26 C 0.115 3.885 27 C -0.106 4.106 28 C -0.144 4.144 29 C -0.142 4.142 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.021 0.979 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.019 0.981 41 H 0.250 0.750 42 H 0.000 1.000 43 H 0.051 0.949 44 H 0.016 0.984 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.051 0.949 48 H 0.102 0.898 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.056 0.944 52 H 0.023 0.977 53 H 0.073 0.927 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.657 -0.496 22.234 30.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.305 6.305 3 C 0.026 3.974 4 H 0.131 0.869 5 C 0.308 3.692 6 O -0.456 6.456 7 N -0.350 5.350 8 C -0.027 4.027 9 C -0.148 4.148 10 C -0.038 4.038 11 H 0.073 0.927 12 N -0.249 5.249 13 C -0.071 4.071 14 C 0.018 3.982 15 N -0.340 5.340 16 C -0.393 4.393 17 H 0.085 0.915 18 C -0.247 4.247 19 N -0.583 5.583 20 Si 0.797 3.203 21 H -0.189 1.189 22 H -0.219 1.219 23 H -0.217 1.217 24 C 0.064 3.936 25 C -0.081 4.081 26 C -0.009 4.009 27 C -0.125 4.125 28 C -0.201 4.201 29 C -0.199 4.199 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.040 0.960 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.069 0.931 44 H 0.034 0.966 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.120 0.880 49 H 0.092 0.908 50 H 0.094 0.906 51 H 0.075 0.925 52 H 0.043 0.957 53 H 0.092 0.908 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.664 -1.184 21.595 29.912 hybrid contribution 1.839 -0.627 -0.737 2.078 sum -18.825 -1.810 20.858 28.155 Atomic orbital electron populations 1.23236 0.78881 1.04319 1.01516 1.88009 1.21701 1.25971 1.94859 1.22091 0.92920 0.87398 0.95032 0.86856 1.21003 0.85462 0.81848 0.80846 1.90699 1.63596 1.33244 1.58092 1.48488 1.35989 1.06974 1.43569 1.22509 1.00366 0.79530 1.00273 1.22683 0.93112 0.97144 1.01848 1.22786 0.96031 0.93181 0.91784 0.92685 1.61997 1.31000 1.07710 1.24186 1.22492 0.95137 0.92655 0.96769 1.21160 0.94538 0.91313 0.91173 1.44369 1.13378 1.15013 1.61201 1.19538 0.88992 1.30445 1.00280 0.91518 1.25967 1.01818 1.01410 0.95489 1.70145 1.33950 1.43718 1.10498 0.85173 0.80255 0.77013 0.77810 1.18896 1.21890 1.21708 1.20631 0.93465 0.87865 0.91617 1.22692 0.94543 0.94407 0.96491 1.22130 0.88984 0.96988 0.92767 1.21629 0.98302 1.00404 0.92138 1.21881 0.96196 1.02576 0.99401 1.21720 0.97750 0.99521 1.00935 0.93478 0.88715 0.90907 0.88449 0.88524 0.87352 0.89474 0.96036 0.87675 0.92009 0.96255 0.94109 0.98140 0.93097 0.96621 0.90986 0.91515 0.93042 0.88026 0.90782 0.90581 0.92477 0.95728 0.90803 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.30 113.37 1.17 1.37 16 2 O -0.39 -8.38 8.91 -130.33 -1.16 -9.54 16 3 C 0.09 1.54 1.82 29.85 0.05 1.60 16 4 H 0.11 1.29 7.40 -2.39 -0.02 1.27 16 5 C 0.52 13.92 5.94 87.66 0.52 14.45 16 6 O -0.58 -21.97 16.75 15.63 0.26 -21.71 16 7 N -0.61 -14.02 3.33 -811.78 -2.70 -16.72 16 8 C 0.09 1.22 6.12 86.73 0.53 1.75 16 9 C -0.11 -1.72 6.08 31.78 0.19 -1.53 16 10 C 0.07 1.77 2.79 46.31 0.13 1.90 16 11 H 0.06 1.38 8.07 -2.39 -0.02 1.36 16 12 N -0.52 -16.98 4.53 -860.97 -3.90 -20.88 16 13 C 0.06 1.85 5.51 86.38 0.48 2.33 16 14 C 0.14 5.85 6.69 86.35 0.58 6.43 16 15 N -0.62 -31.57 3.02 -697.25 -2.10 -33.67 16 16 C -0.26 -14.63 9.61 84.03 0.81 -13.82 16 17 H 0.07 3.60 7.85 -2.91 -0.02 3.58 16 18 C -0.05 -2.93 5.06 84.86 0.43 -2.50 16 19 N -0.94 -56.71 11.10 21.65 0.24 -56.47 16 20 Si 0.97 45.61 29.57 68.60 2.03 47.64 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.19 9.59 5.38 86.50 0.47 10.06 16 25 C 0.05 1.92 5.29 86.54 0.46 2.37 16 26 C 0.11 3.21 4.85 86.86 0.42 3.63 16 27 C -0.11 -1.39 2.72 -10.79 -0.03 -1.42 16 28 C -0.14 -1.11 7.82 71.98 0.56 -0.55 16 29 C -0.14 -2.63 8.80 71.98 0.63 -2.00 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 0.52 5.84 -2.39 -0.01 0.50 16 33 H 0.10 0.80 7.98 -2.39 -0.02 0.78 16 34 H 0.10 0.79 6.04 -2.38 -0.01 0.78 16 35 H 0.11 1.17 8.13 -2.39 -0.02 1.15 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.11 2.48 7.66 -2.39 -0.02 2.46 16 39 H 0.06 2.40 7.95 -2.39 -0.02 2.38 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 43 H 0.05 2.90 6.27 -2.39 -0.01 2.89 16 44 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 2.72 6.14 -2.39 -0.01 2.70 16 46 H 0.07 2.06 7.64 -2.38 -0.02 2.04 16 47 H 0.05 1.69 7.82 -2.39 -0.02 1.68 16 48 H 0.10 0.97 5.68 -2.38 -0.01 0.96 16 49 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 50 H 0.08 0.30 7.93 -2.39 -0.02 0.29 16 51 H 0.06 0.54 6.81 -2.39 -0.02 0.53 16 52 H 0.02 0.59 7.21 -2.39 -0.02 0.57 16 53 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 54 H 0.05 1.09 7.66 -2.39 -0.02 1.08 16 Total: -1.00 -77.78 404.97 0.92 -76.85 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.86 Total: 10.44 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 7.40 Total: 24.06 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -8.46 Total: -127.74 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.90 Total: -31.25 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -77.78 0.92 -76.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052077204.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.426 kcal (2) G-P(sol) polarization free energy of solvation -77.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds