Wall clock time and date at job start Tue Mar 31 2020 23:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99998 * 2 1 4 4 H 1.08994 * 109.47192 * 16.70135 * 3 2 1 5 5 C 1.50701 * 109.47183 * 136.70145 * 3 2 1 6 6 O 1.21279 * 119.99870 * 14.42697 * 5 3 2 7 7 N 1.34775 * 119.99934 * 194.43241 * 5 3 2 8 8 C 1.47022 * 125.64957 * 355.40290 * 7 5 3 9 9 C 1.54319 * 107.26986 * 181.02700 * 8 7 5 10 10 C 1.55158 * 102.94649 * 22.19497 * 9 8 7 11 11 H 1.08998 * 111.03800 * 82.58258 * 10 9 8 12 12 N 1.46893 * 111.00601 * 206.42547 * 10 9 8 13 13 C 1.46904 * 111.00321 * 169.22400 * 12 10 9 14 14 C 1.53239 * 109.36523 * 187.23779 * 13 12 10 15 15 N 1.47085 * 108.51557 * 306.21191 * 14 13 12 16 16 C 1.36938 * 120.85762 * 231.12106 * 15 14 13 17 17 H 1.07998 * 120.00148 * 30.91220 * 16 15 14 18 18 C 1.38808 * 119.99913 * 210.91644 * 16 15 14 19 19 N 1.31619 * 120.00091 * 9.51355 * 18 16 15 20 20 Si 1.86803 * 120.00190 * 189.50949 * 18 16 15 21 21 H 1.48500 * 109.46897 * 89.99800 * 20 18 16 22 22 H 1.48497 * 109.47242 * 210.00412 * 20 18 16 23 23 H 1.48501 * 109.46903 * 329.99881 * 20 18 16 24 24 C 1.47074 * 118.26152 * 51.13954 * 15 14 13 25 25 C 1.46905 * 110.99872 * 293.52368 * 12 10 9 26 26 C 1.47422 * 125.64611 * 175.37016 * 7 5 3 27 27 C 1.53003 * 109.47057 * 256.70036 * 3 2 1 28 28 C 1.52999 * 109.47259 * 303.79157 * 27 3 2 29 29 C 1.52997 * 109.47017 * 63.79449 * 27 3 2 30 30 H 1.09003 * 109.47186 * 303.25881 * 1 2 3 31 31 H 1.09000 * 109.47298 * 63.25659 * 1 2 3 32 32 H 1.08995 * 109.47110 * 183.25625 * 1 2 3 33 33 H 1.09001 * 109.88130 * 300.44531 * 8 7 5 34 34 H 1.08995 * 109.87878 * 61.60859 * 8 7 5 35 35 H 1.08998 * 110.72101 * 263.83181 * 9 8 7 36 36 H 1.09003 * 110.71769 * 140.56000 * 9 8 7 37 37 H 1.09000 * 109.49024 * 307.21225 * 13 12 10 38 38 H 1.09003 * 109.49003 * 67.26168 * 13 12 10 39 39 H 1.09004 * 109.62338 * 65.89060 * 14 13 12 40 40 H 1.08998 * 109.62413 * 186.47291 * 14 13 12 41 41 H 0.97001 * 119.99978 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.63171 * 189.12443 * 24 15 14 43 43 H 1.09000 * 109.62828 * 68.54435 * 24 15 14 44 44 H 1.08997 * 109.49229 * 292.70641 * 25 12 10 45 45 H 1.08993 * 109.49351 * 52.76293 * 25 12 10 46 46 H 1.09001 * 110.37092 * 37.06172 * 26 7 5 47 47 H 1.09007 * 110.46012 * 274.78614 * 26 7 5 48 48 H 1.09001 * 109.46537 * 183.78986 * 27 3 2 49 49 H 1.09003 * 109.46927 * 64.64824 * 28 27 3 50 50 H 1.08997 * 109.46927 * 184.65060 * 28 27 3 51 51 H 1.08997 * 109.47134 * 304.64924 * 28 27 3 52 52 H 1.09000 * 109.47349 * 296.90746 * 29 27 3 53 53 H 1.09000 * 109.47428 * 56.90533 * 29 27 3 54 54 H 1.09001 * 109.47064 * 176.90588 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2588 2.0377 0.2953 5 6 3.1592 1.3438 0.9744 6 8 3.6208 0.3098 1.4086 7 7 3.6736 2.5272 1.3634 8 6 3.2767 3.8454 0.8472 9 6 4.1489 4.8989 1.5619 10 6 5.3790 4.0749 2.0260 11 1 6.1029 3.9642 1.2187 12 7 6.0029 4.6814 3.2095 13 6 6.9995 3.7782 3.8004 14 6 7.4941 4.3653 5.1267 15 7 7.9643 5.7376 4.8836 16 6 9.2014 6.1419 5.3093 17 1 10.0132 5.4316 5.3619 18 6 9.4120 7.4647 5.6735 19 7 8.3899 8.2858 5.7903 20 14 11.1458 8.0796 5.9978 21 1 11.7331 8.5936 4.7344 22 1 11.1039 9.1708 7.0042 23 1 11.9787 6.9632 6.5127 24 6 7.0709 6.6640 4.1717 25 6 6.5936 5.9862 2.8829 26 6 4.7271 2.7143 2.3776 27 6 2.5208 1.6364 -1.4038 28 6 3.5053 0.5562 -1.8563 29 6 1.3407 1.6905 -2.3761 30 1 -0.3634 0.5636 0.8593 31 1 -0.3634 0.4624 -0.9177 32 1 -0.3633 -1.0260 0.0584 33 1 3.4488 3.8894 -0.2283 34 1 2.2241 4.0267 1.0640 35 1 3.6214 5.3197 2.4179 36 1 4.4501 5.6845 0.8689 37 1 6.5455 2.8038 3.9808 38 1 7.8404 3.6667 3.1159 39 1 6.6766 4.3810 5.8475 40 1 8.3142 3.7595 5.5119 41 1 8.5371 9.2103 6.0444 42 1 7.6117 7.5780 3.9260 43 1 6.2127 6.9008 4.8005 44 1 7.4403 5.8443 2.2114 45 1 5.8455 6.6128 2.3975 46 1 5.4631 1.9130 2.3125 47 1 4.2924 2.7489 3.3766 48 1 3.0238 2.6033 -1.3889 49 1 2.9823 -0.3955 -1.9507 50 1 3.9315 0.8339 -2.8203 51 1 4.3035 0.4607 -1.1202 52 1 0.8711 0.7085 -2.4325 53 1 0.6129 2.4215 -2.0239 54 1 1.6973 1.9801 -3.3646 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052077205.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:09 Heat of formation + Delta-G solvation = -64.150120 kcal Electronic energy + Delta-G solvation = -31277.081715 eV Core-core repulsion = 27249.056360 eV Total energy + Delta-G solvation = -4028.025354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.61429 -40.16895 -38.90780 -37.96059 -35.94475 -35.47808 -33.40362 -31.83282 -31.68936 -30.07805 -29.11048 -28.14492 -27.64561 -26.49928 -25.05906 -24.45990 -23.56250 -21.64501 -21.57804 -20.83861 -20.43604 -18.84534 -18.34964 -17.89942 -17.30021 -17.03229 -16.78822 -16.47722 -15.92625 -15.72384 -15.47682 -15.27430 -15.20244 -14.95351 -14.88023 -14.76966 -14.53936 -14.16049 -13.98631 -13.85934 -13.57103 -13.31586 -13.27315 -12.98803 -12.92059 -12.75808 -12.63423 -12.51813 -12.45550 -12.29369 -12.17067 -12.03754 -12.02407 -11.91063 -11.86986 -11.56249 -11.45483 -11.35521 -11.08641 -10.59597 -10.38125 -9.73133 -9.32734 -8.62088 -7.87161 -5.38178 1.46807 1.47035 1.47849 1.56504 1.64230 2.49644 2.82652 2.99743 3.28959 3.29518 3.63558 3.65374 3.68072 3.69985 3.83416 4.03484 4.10911 4.20121 4.28238 4.31799 4.32050 4.38017 4.47462 4.53515 4.55441 4.57839 4.60381 4.68532 4.69710 4.79628 4.80576 4.84953 4.87594 4.88088 4.92101 5.00260 5.01294 5.02776 5.14119 5.15895 5.19919 5.26584 5.35380 5.38673 5.42672 5.61145 5.73228 6.05995 6.13145 6.23386 6.40349 6.44620 7.05959 7.15367 7.83285 8.38742 9.18850 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029531 B = 0.002165 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.939437 B =12927.498630 C =13161.931398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.385 6.385 3 C 0.087 3.913 4 H 0.113 0.887 5 C 0.519 3.481 6 O -0.575 6.575 7 N -0.615 5.615 8 C 0.097 3.903 9 C -0.116 4.116 10 C 0.071 3.929 11 H 0.051 0.949 12 N -0.525 5.525 13 C 0.053 3.947 14 C 0.146 3.854 15 N -0.615 5.615 16 C -0.265 4.265 17 H 0.062 0.938 18 C -0.048 4.048 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.283 1.283 22 H -0.293 1.293 23 H -0.272 1.272 24 C 0.186 3.814 25 C 0.055 3.945 26 C 0.120 3.880 27 C -0.106 4.106 28 C -0.141 4.141 29 C -0.143 4.143 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.021 0.979 39 H 0.017 0.983 40 H 0.056 0.944 41 H 0.251 0.749 42 H 0.058 0.942 43 H 0.001 0.999 44 H 0.017 0.983 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.098 0.902 49 H 0.054 0.946 50 H 0.070 0.930 51 H 0.024 0.976 52 H 0.057 0.943 53 H 0.074 0.926 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.906 -9.556 -18.806 28.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.303 6.303 3 C 0.025 3.975 4 H 0.131 0.869 5 C 0.308 3.692 6 O -0.454 6.454 7 N -0.350 5.350 8 C -0.024 4.024 9 C -0.154 4.154 10 C -0.038 4.038 11 H 0.069 0.931 12 N -0.250 5.250 13 C -0.076 4.076 14 C 0.020 3.980 15 N -0.340 5.340 16 C -0.396 4.396 17 H 0.080 0.920 18 C -0.243 4.243 19 N -0.580 5.580 20 Si 0.798 3.202 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.196 1.196 24 C 0.061 3.939 25 C -0.074 4.074 26 C -0.004 4.004 27 C -0.124 4.124 28 C -0.198 4.198 29 C -0.200 4.200 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.019 0.981 44 H 0.035 0.965 45 H 0.110 0.890 46 H 0.076 0.924 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.044 0.956 52 H 0.076 0.924 53 H 0.093 0.907 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.956 -10.128 -18.199 28.162 hybrid contribution 1.742 0.369 0.334 1.812 sum -17.214 -9.759 -17.865 26.659 Atomic orbital electron populations 1.23217 0.78927 1.04110 1.01585 1.88005 1.21631 1.25890 1.94791 1.22106 0.93600 0.87423 0.94342 0.86909 1.21005 0.84688 0.81696 0.81764 1.90692 1.62456 1.33995 1.58238 1.48488 1.39072 1.06806 1.40662 1.22450 1.00537 0.79835 0.99613 1.22703 0.94077 0.97253 1.01349 1.22744 0.96116 0.93582 0.91367 0.93122 1.61953 1.32208 1.03382 1.27492 1.22466 0.93012 0.95740 0.96383 1.21088 0.96402 0.86115 0.94365 1.44358 1.15662 1.08741 1.65192 1.19480 0.87646 0.94637 1.37803 0.91994 1.25913 1.00848 0.98148 0.99419 1.70124 1.30322 1.05153 1.52402 0.85229 0.79929 0.77667 0.77351 1.20980 1.21912 1.19642 1.20647 0.91316 0.92423 0.89545 1.22596 0.96879 0.90360 0.97610 1.22058 0.89833 0.96425 0.92039 1.21602 0.98293 1.00158 0.92388 1.21700 0.98187 0.99201 1.00727 1.21870 0.96674 1.02601 0.98886 0.93208 0.91287 0.88779 0.88693 0.88418 0.89521 0.88049 0.89786 0.96038 0.96515 0.92537 0.93961 0.92326 0.98089 0.96454 0.88977 0.92424 0.91104 0.88379 0.92714 0.91086 0.95631 0.92367 0.90661 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.42 113.37 1.18 1.38 16 2 O -0.39 -8.00 8.88 -130.35 -1.16 -9.16 16 3 C 0.09 1.49 1.77 29.85 0.05 1.54 16 4 H 0.11 1.25 7.30 -2.39 -0.02 1.23 16 5 C 0.52 13.30 6.05 87.66 0.53 13.83 16 6 O -0.58 -20.76 16.65 15.60 0.26 -20.50 16 7 N -0.61 -13.47 3.33 -811.80 -2.70 -16.17 16 8 C 0.10 1.31 6.12 86.73 0.53 1.84 16 9 C -0.12 -2.01 5.56 31.78 0.18 -1.83 16 10 C 0.07 1.77 2.72 46.31 0.13 1.90 16 11 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 12 N -0.53 -17.09 4.53 -861.90 -3.90 -21.00 16 13 C 0.05 1.88 5.44 86.38 0.47 2.35 16 14 C 0.15 6.31 6.69 86.35 0.58 6.89 16 15 N -0.62 -31.59 3.03 -698.12 -2.11 -33.70 16 16 C -0.27 -14.81 9.62 84.03 0.81 -14.00 16 17 H 0.06 3.40 7.85 -2.91 -0.02 3.38 16 18 C -0.05 -2.67 5.09 84.86 0.43 -2.24 16 19 N -0.93 -54.94 11.02 21.65 0.24 -54.70 16 20 Si 0.97 44.95 29.56 68.60 2.03 46.98 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 C 0.19 8.96 5.35 86.35 0.46 9.42 16 25 C 0.05 1.97 5.51 86.38 0.48 2.45 16 26 C 0.12 3.12 5.11 86.86 0.44 3.57 16 27 C -0.11 -1.39 2.69 -10.79 -0.03 -1.42 16 28 C -0.14 -2.56 8.81 71.98 0.63 -1.92 16 29 C -0.14 -1.14 8.21 71.98 0.59 -0.55 16 30 H 0.05 0.51 8.07 -2.39 -0.02 0.49 16 31 H 0.07 0.49 6.22 -2.39 -0.01 0.48 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 0.87 6.06 -2.39 -0.01 0.85 16 34 H 0.10 0.86 7.97 -2.39 -0.02 0.84 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.10 1.42 7.96 -2.39 -0.02 1.40 16 37 H 0.08 2.63 6.65 -2.39 -0.02 2.61 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 2.38 7.95 -2.39 -0.02 2.36 16 41 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 42 H 0.06 3.16 6.21 -2.38 -0.01 3.14 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.02 0.65 8.14 -2.39 -0.02 0.64 16 45 H 0.09 2.77 7.05 -2.39 -0.02 2.75 16 46 H 0.06 1.71 7.71 -2.39 -0.02 1.69 16 47 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 48 H 0.10 1.02 5.71 -2.39 -0.01 1.00 16 49 H 0.05 1.09 7.74 -2.39 -0.02 1.07 16 50 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.02 0.61 7.08 -2.39 -0.02 0.59 16 52 H 0.06 0.54 6.60 -2.39 -0.02 0.53 16 53 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 54 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -74.74 405.47 0.98 -73.77 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.86 Total: 11.28 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 7.46 Total: 23.21 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -8.48 Total: -125.58 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.90 Total: -29.66 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -74.74 0.98 -73.77 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052077205.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.618 kcal (2) G-P(sol) polarization free energy of solvation -74.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds