Wall clock time and date at job start Tue Mar 31 2020 23:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47305 * 2 1 4 4 C 1.53001 * 109.46972 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47014 * 180.02562 * 4 3 2 6 6 C 1.46852 * 110.99728 * 308.23044 * 5 4 3 7 7 C 1.53039 * 109.52155 * 174.16066 * 6 5 4 8 8 C 1.53124 * 109.27511 * 59.18114 * 7 6 5 9 9 C 1.53114 * 109.16215 * 302.34433 * 8 7 6 10 10 C 1.46839 * 110.99773 * 184.02499 * 5 4 3 11 11 H 1.09003 * 109.46753 * 65.83457 * 10 5 4 12 12 C 1.50699 * 109.46281 * 305.85185 * 10 5 4 13 13 O 1.21284 * 120.00151 * 331.11204 * 12 10 5 14 14 N 1.34782 * 120.00109 * 151.11737 * 12 10 5 15 15 C 1.46498 * 120.00005 * 179.72362 * 14 12 10 16 16 H 1.09003 * 110.63835 * 36.96081 * 15 14 12 17 17 C 1.54324 * 110.72142 * 273.82249 * 15 14 12 18 18 N 1.47024 * 107.26724 * 219.44677 * 17 15 14 19 19 C 1.36933 * 125.64526 * 178.90571 * 18 17 15 20 20 H 1.08001 * 120.00385 * 359.97438 * 19 18 17 21 21 C 1.38818 * 120.00058 * 179.97438 * 19 18 17 22 22 N 1.31612 * 119.99733 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00034 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47090 * 59.99733 * 23 21 19 25 25 H 1.48496 * 109.46945 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46827 * 299.99797 * 23 21 19 27 27 C 1.47425 * 108.70670 * 358.93522 * 18 17 15 28 28 C 1.54911 * 104.82805 * 24.13275 * 27 18 17 29 29 H 1.08996 * 111.00519 * 81.07047 * 28 27 18 30 30 O 1.42910 * 111.00070 * 204.91633 * 28 27 18 31 31 H 1.09005 * 109.47380 * 300.00473 * 1 2 3 32 32 H 1.09000 * 109.46902 * 59.99769 * 1 2 3 33 33 H 1.08996 * 109.47661 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46948 * 239.99803 * 2 1 3 35 35 H 1.09000 * 109.46902 * 120.00231 * 2 1 3 36 36 H 1.09007 * 109.46848 * 60.00089 * 3 2 1 37 37 H 1.09000 * 109.47329 * 299.99970 * 3 2 1 38 38 H 1.08994 * 109.47049 * 60.00315 * 4 3 2 39 39 H 1.09000 * 109.47398 * 300.00330 * 4 3 2 40 40 H 1.08996 * 109.46364 * 294.18029 * 6 5 4 41 41 H 1.09002 * 109.46184 * 54.15833 * 6 5 4 42 42 H 1.08996 * 109.49977 * 179.12142 * 7 6 5 43 43 H 1.08994 * 109.50408 * 299.19960 * 7 6 5 44 44 H 1.08997 * 109.51870 * 62.25054 * 8 7 6 45 45 H 1.09006 * 109.52099 * 182.37581 * 8 7 6 46 46 H 1.09005 * 109.50459 * 297.71743 * 9 8 7 47 47 H 1.08994 * 109.50589 * 177.60130 * 9 8 7 48 48 H 0.96998 * 119.99747 * 359.97438 * 14 12 10 49 49 H 1.08999 * 109.87902 * 338.85796 * 17 15 14 50 50 H 1.08997 * 109.88250 * 100.02710 * 17 15 14 51 51 H 0.97002 * 120.00072 * 180.02562 * 22 21 19 52 52 H 1.08995 * 110.36474 * 142.96678 * 27 18 17 53 53 H 1.09001 * 110.36524 * 265.29743 * 27 18 17 54 54 H 0.96696 * 113.99819 * 292.19439 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0598 2.8274 0.0013 6 6 3.4358 3.6066 -1.0757 7 6 3.8561 5.0732 -0.9554 8 6 5.3815 5.1710 -1.0471 9 6 6.0073 4.3121 0.0552 10 6 5.5245 2.8676 -0.0943 11 1 5.8360 2.4793 -1.0640 12 6 6.1225 2.0224 1.0007 13 8 5.5282 1.8773 2.0479 14 7 7.3180 1.4278 0.8163 15 6 7.9022 0.6112 1.8831 16 1 7.1267 0.0538 2.4086 17 6 8.7045 1.4896 2.8661 18 7 9.9143 0.7395 3.2340 19 6 10.9025 1.1807 4.0729 20 1 10.8294 2.1582 4.5264 21 6 11.9983 0.3717 4.3406 22 7 12.0872 -0.8197 3.7884 23 14 13.3461 0.9734 5.4857 24 1 12.7695 1.2515 6.8257 25 1 14.3958 -0.0700 5.6058 26 1 13.9438 2.2168 4.9362 27 6 9.8877 -0.5660 2.5496 28 6 8.9812 -0.3467 1.3127 29 1 9.5346 0.1267 0.5017 30 8 8.3971 -1.5775 0.8812 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6767 1.9563 0.8901 37 1 1.6767 1.9563 -0.8900 38 1 3.9337 0.9285 -0.8891 39 1 3.9330 0.9286 0.8908 40 1 3.7570 3.2147 -2.0407 41 1 2.3512 3.5322 -0.9964 42 1 3.4053 5.6484 -1.7641 43 1 3.5224 5.4700 0.0033 44 1 5.7116 4.8106 -2.0214 45 1 5.6883 6.2092 -0.9197 46 1 5.7081 4.6967 1.0302 47 1 7.0934 4.3437 -0.0313 48 1 7.7932 1.5437 -0.0213 49 1 8.9818 2.4270 2.3839 50 1 8.1077 1.6902 3.7558 51 1 12.8527 -1.3852 3.9757 52 1 10.8924 -0.8513 2.2378 53 1 9.4612 -1.3278 3.2022 54 1 9.0330 -2.2083 0.5169 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077980496.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:05 Heat of formation + Delta-G solvation = -88.981679 kcal Electronic energy + Delta-G solvation = -31215.908750 eV Core-core repulsion = 27186.806618 eV Total energy + Delta-G solvation = -4029.102132 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.59524 -40.05320 -38.79783 -36.71693 -36.57575 -35.57244 -33.88571 -33.70592 -32.22278 -30.18732 -29.48746 -28.77068 -26.61575 -25.67965 -24.86519 -23.23430 -22.53021 -21.96200 -21.64006 -21.35320 -20.61237 -19.13136 -18.58060 -18.13227 -17.39457 -16.97100 -16.59522 -16.38523 -16.22086 -15.71323 -15.57490 -15.38615 -15.11772 -15.00730 -14.78095 -14.51699 -14.32878 -14.17103 -14.02336 -13.87641 -13.67943 -13.44808 -13.22578 -13.14646 -13.12560 -12.83526 -12.71116 -12.37487 -12.27816 -12.12346 -12.07247 -11.94328 -11.82739 -11.79060 -11.62968 -11.49161 -11.45759 -11.10208 -11.08324 -10.79103 -10.59655 -10.18807 -9.26551 -8.99826 -7.83702 -5.30206 1.46215 1.49636 1.55437 1.56323 1.94498 2.45674 2.84689 3.04798 3.27679 3.53974 3.60579 3.79724 3.85825 3.92357 3.95256 4.01374 4.04853 4.10216 4.17662 4.22525 4.27060 4.30521 4.37898 4.39607 4.57142 4.57706 4.62774 4.67061 4.79017 4.80391 4.81680 4.91862 4.92186 4.97244 4.98858 5.06878 5.12182 5.19873 5.23520 5.29146 5.34885 5.36730 5.41494 5.42594 5.44516 5.48778 5.65207 5.96317 6.15392 6.18927 6.53972 6.83777 7.02866 7.23405 7.66755 8.29178 9.17990 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014523 B = 0.002663 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.541515 B =10512.385719 C =11665.459931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.108 4.108 4 C 0.052 3.948 5 N -0.534 5.534 6 C 0.051 3.949 7 C -0.117 4.117 8 C -0.113 4.113 9 C -0.106 4.106 10 C 0.081 3.919 11 H 0.080 0.920 12 C 0.513 3.487 13 O -0.564 6.564 14 N -0.704 5.704 15 C 0.159 3.841 16 H 0.071 0.929 17 C 0.134 3.866 18 N -0.619 5.619 19 C -0.246 4.246 20 H 0.080 0.920 21 C -0.061 4.061 22 N -0.946 5.946 23 Si 0.984 3.016 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.273 1.273 27 C 0.134 3.866 28 C 0.093 3.907 29 H 0.089 0.911 30 O -0.568 6.568 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.055 0.945 47 H 0.081 0.919 48 H 0.414 0.586 49 H 0.041 0.959 50 H 0.010 0.990 51 H 0.251 0.749 52 H 0.092 0.908 53 H -0.011 1.011 54 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.473 7.787 -18.124 26.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.145 4.145 4 C -0.076 4.076 5 N -0.260 5.260 6 C -0.076 4.076 7 C -0.155 4.155 8 C -0.150 4.150 9 C -0.145 4.145 10 C -0.030 4.030 11 H 0.098 0.902 12 C 0.300 3.700 13 O -0.441 6.441 14 N -0.356 5.356 15 C 0.053 3.947 16 H 0.089 0.911 17 C 0.007 3.993 18 N -0.346 5.346 19 C -0.375 4.375 20 H 0.098 0.902 21 C -0.253 4.253 22 N -0.595 5.595 23 Si 0.811 3.189 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.198 1.198 27 C 0.008 3.992 28 C 0.033 3.967 29 H 0.107 0.893 30 O -0.376 6.376 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.074 0.926 47 H 0.099 0.901 48 H 0.251 0.749 49 H 0.059 0.941 50 H 0.028 0.972 51 H 0.061 0.939 52 H 0.110 0.890 53 H 0.007 0.993 54 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -18.400 8.116 -16.655 26.111 hybrid contribution 1.838 -0.822 0.174 2.021 sum -16.561 7.294 -16.480 24.476 Atomic orbital electron populations 1.21727 0.94487 1.02063 1.02165 1.21490 0.96970 0.96217 1.01626 1.21622 0.92894 0.97320 1.02682 1.22193 0.96877 0.88619 0.99910 1.61688 1.03500 1.12864 1.47907 1.22338 1.00188 0.93842 0.91238 1.21634 0.95903 0.95160 1.02784 1.21565 0.95419 1.00131 0.97915 1.21567 1.00807 0.91393 1.00707 1.21585 0.89437 0.96699 0.95312 0.90247 1.21139 0.80476 0.79165 0.89188 1.90690 1.61788 1.61914 1.29737 1.45848 1.20835 1.50531 1.18413 1.21481 0.94233 0.90495 0.88522 0.91115 1.21651 0.87379 0.94854 0.95426 1.44543 1.20292 1.15621 1.54178 1.19401 0.97765 1.00512 1.19784 0.90227 1.25641 1.00915 0.96542 1.02241 1.69945 1.31202 1.10282 1.48112 0.85079 0.78198 0.77224 0.78360 1.20901 1.21523 1.19825 1.22369 0.99816 0.86515 0.90481 1.23239 0.92257 0.85029 0.96219 0.89319 1.86387 1.39321 1.27934 1.83919 0.92954 0.91688 0.92285 0.91642 0.93533 0.92305 0.89968 0.94826 0.92996 0.93759 0.89032 0.89077 0.92277 0.90479 0.90187 0.92608 0.90086 0.74902 0.94111 0.97184 0.93914 0.89012 0.99254 0.75232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.38 16 2 C -0.12 -2.23 5.93 30.59 0.18 -2.05 16 3 C -0.11 -2.04 4.71 30.59 0.14 -1.89 16 4 C 0.05 1.23 4.58 86.30 0.40 1.62 16 5 N -0.53 -12.16 4.36 -875.49 -3.82 -15.98 16 6 C 0.05 0.79 5.03 86.33 0.43 1.22 16 7 C -0.12 -1.57 6.09 30.65 0.19 -1.38 16 8 C -0.11 -1.51 6.00 30.67 0.18 -1.33 16 9 C -0.11 -2.10 5.36 30.65 0.16 -1.93 16 10 C 0.08 1.84 2.23 44.19 0.10 1.94 16 11 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 12 C 0.51 16.07 6.00 87.66 0.53 16.60 16 13 O -0.56 -23.08 14.87 -3.04 -0.05 -23.13 16 14 N -0.70 -20.93 5.13 -436.91 -2.24 -23.18 16 15 C 0.16 6.12 2.97 46.18 0.14 6.26 16 16 H 0.07 3.15 7.70 -2.39 -0.02 3.13 16 17 C 0.13 6.02 6.99 86.73 0.61 6.63 16 18 N -0.62 -32.56 3.39 -691.98 -2.35 -34.91 16 19 C -0.25 -13.94 10.27 84.04 0.86 -13.08 16 20 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 21 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16 22 N -0.95 -54.99 10.09 21.65 0.22 -54.77 16 23 Si 0.98 45.22 29.55 68.60 2.03 47.25 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 27 C 0.13 6.55 5.62 86.86 0.49 7.04 16 28 C 0.09 3.42 4.04 31.99 0.13 3.55 16 29 H 0.09 2.84 8.00 -2.39 -0.02 2.82 16 30 O -0.57 -18.70 13.47 -148.98 -2.01 -20.71 16 31 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.08 1.21 6.19 -2.39 -0.01 1.20 16 38 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 1.66 6.10 -2.39 -0.01 1.64 16 40 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.09 1.27 5.84 -2.39 -0.01 1.26 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 46 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 47 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.41 9.38 8.52 -92.71 -0.79 8.59 16 49 H 0.04 1.74 8.03 -2.39 -0.02 1.73 16 50 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 52 H 0.09 4.88 5.88 -2.39 -0.01 4.86 16 53 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 54 H 0.40 9.58 9.12 -74.06 -0.68 8.91 16 Total: -1.00 -73.14 413.34 -3.08 -76.22 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: -0.58 Total: 30.33 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 5.72 Total: 18.88 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -8.19 Total: -128.84 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -2.05 Total: -43.84 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -73.14 -3.08 -76.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077980496.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.766 kcal (2) G-P(sol) polarization free energy of solvation -73.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds