Wall clock time and date at job start Tue Mar 31 2020 23:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47296 * 2 1 4 4 C 1.53007 * 109.47283 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47053 * 179.97438 * 4 3 2 6 6 C 1.46841 * 110.99924 * 75.67631 * 5 4 3 7 7 C 1.53031 * 109.52455 * 185.83721 * 6 5 4 8 8 C 1.53115 * 109.28055 * 300.82406 * 7 6 5 9 9 C 1.53119 * 109.16230 * 57.65104 * 8 7 6 10 10 C 1.46844 * 110.99683 * 199.88639 * 5 4 3 11 11 H 1.09001 * 109.46308 * 294.17376 * 10 5 4 12 12 C 1.50695 * 109.46363 * 54.14589 * 10 5 4 13 13 O 1.21285 * 120.00254 * 28.76665 * 12 10 5 14 14 N 1.34780 * 120.00041 * 208.76058 * 12 10 5 15 15 C 1.46496 * 119.99999 * 180.02562 * 14 12 10 16 16 H 1.09002 * 110.88758 * 31.12092 * 15 14 12 17 17 C 1.54918 * 111.00544 * 267.19949 * 15 14 12 18 18 N 1.47426 * 104.83080 * 204.91825 * 17 15 14 19 19 C 1.36939 * 125.64358 * 204.10186 * 18 17 15 20 20 H 1.08001 * 120.00035 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99477 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00426 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99610 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47096 * 60.00250 * 23 21 19 25 25 H 1.48502 * 109.47245 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47452 * 300.00367 * 23 21 19 27 27 C 1.47022 * 108.70504 * 24.12680 * 18 17 15 28 28 C 1.54327 * 107.26964 * 358.94238 * 27 18 17 29 29 H 1.08992 * 110.87166 * 96.24674 * 28 27 18 30 30 O 1.42905 * 110.71372 * 219.44508 * 28 27 18 31 31 H 1.09008 * 109.47045 * 60.00526 * 1 2 3 32 32 H 1.08998 * 109.47534 * 299.99925 * 1 2 3 33 33 H 1.09003 * 109.47325 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.47244 * 119.99980 * 2 1 3 35 35 H 1.09007 * 109.47517 * 239.99965 * 2 1 3 36 36 H 1.08997 * 109.47350 * 299.99720 * 3 2 1 37 37 H 1.08996 * 109.47226 * 59.99870 * 3 2 1 38 38 H 1.08998 * 109.46685 * 299.99727 * 4 3 2 39 39 H 1.08996 * 109.46911 * 59.99903 * 4 3 2 40 40 H 1.09002 * 109.46715 * 305.85737 * 6 5 4 41 41 H 1.09008 * 109.46590 * 65.83275 * 6 5 4 42 42 H 1.09004 * 109.50346 * 60.76187 * 7 6 5 43 43 H 1.09004 * 109.50654 * 180.84270 * 7 6 5 44 44 H 1.09001 * 109.52482 * 177.56066 * 8 7 6 45 45 H 1.09007 * 109.52177 * 297.68116 * 8 7 6 46 46 H 1.08999 * 109.50423 * 62.28823 * 9 8 7 47 47 H 1.08999 * 109.50046 * 182.37161 * 9 8 7 48 48 H 0.96996 * 119.99689 * 0.02562 * 14 12 10 49 49 H 1.08999 * 110.36183 * 323.75567 * 17 15 14 50 50 H 1.08992 * 110.36555 * 86.07533 * 17 15 14 51 51 H 0.96999 * 119.99684 * 179.97438 * 22 21 19 52 52 H 1.08996 * 109.88024 * 239.51990 * 27 18 17 53 53 H 1.08996 * 109.88310 * 118.35673 * 27 18 17 54 54 H 0.96696 * 114.00037 * 293.51665 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.9148 3.4374 1.3279 7 6 4.2970 4.9175 1.2553 8 6 5.7440 5.0428 0.7706 9 6 5.8788 4.3574 -0.5920 10 6 5.4507 2.8935 -0.4658 11 1 6.0979 2.3864 0.2499 12 6 5.5630 2.2200 -1.8091 13 8 4.6098 2.1996 -2.5589 14 7 6.7226 1.6403 -2.1776 15 6 6.8319 0.9861 -3.4838 16 1 6.1911 1.4745 -4.2179 17 6 6.5045 -0.5244 -3.3774 18 7 7.2118 -1.1447 -4.5125 19 6 6.8770 -2.3308 -5.1093 20 1 6.0286 -2.8950 -4.7511 21 6 7.6275 -2.8073 -6.1754 22 7 8.6611 -2.1195 -6.6123 23 14 7.1704 -4.4250 -6.9901 24 1 5.7919 -4.3329 -7.5346 25 1 8.1214 -4.7091 -8.0947 26 1 7.2348 -5.5194 -5.9883 27 6 8.3363 -0.2792 -4.8971 28 6 8.3058 0.9520 -3.9671 29 1 8.9850 0.8194 -3.1250 30 8 8.6279 2.1408 -4.6917 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 3.9329 0.9288 0.8909 39 1 3.9337 0.9285 -0.8891 40 1 2.8804 3.3452 1.6590 41 1 4.5692 2.9278 2.0351 42 1 3.6341 5.4307 0.5586 43 1 4.2036 5.3664 2.2442 44 1 6.0065 6.0965 0.6760 45 1 6.4110 4.5642 1.4878 46 1 5.2409 4.8618 -1.3177 47 1 6.9161 4.4066 -0.9229 48 1 7.4848 1.6564 -1.5779 49 1 6.8741 -0.9271 -2.4343 50 1 5.4303 -0.6868 -3.4652 51 1 9.1857 -2.4527 -7.3570 52 1 8.2231 0.0366 -5.9341 53 1 9.2768 -0.8156 -4.7713 54 1 9.5385 2.1694 -5.0158 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077980497.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:09 Heat of formation + Delta-G solvation = -92.949519 kcal Electronic energy + Delta-G solvation = -31376.653064 eV Core-core repulsion = 27347.378874 eV Total energy + Delta-G solvation = -4029.274190 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.57924 -40.01870 -38.75123 -36.69661 -36.55157 -35.55195 -33.89976 -33.69688 -32.18991 -30.16421 -29.56093 -28.78275 -26.58105 -25.57331 -24.81079 -23.21547 -22.42272 -21.99416 -21.75235 -21.50049 -20.59039 -19.13345 -18.50810 -18.03218 -17.48590 -16.89015 -16.62125 -16.31330 -16.09571 -15.90266 -15.62191 -15.29850 -15.14284 -14.94953 -14.53835 -14.47595 -14.36160 -14.16732 -14.10653 -13.80021 -13.74724 -13.46049 -13.19420 -13.17332 -13.13041 -12.78574 -12.71686 -12.39756 -12.21852 -12.14888 -12.05479 -11.90961 -11.88741 -11.77014 -11.61394 -11.56707 -11.44139 -11.13276 -11.05392 -10.78466 -10.59166 -10.16038 -9.26605 -8.99450 -7.90678 -5.28223 1.44012 1.47732 1.53687 1.58353 1.95077 2.45877 2.84521 3.10965 3.29819 3.53001 3.57306 3.82622 3.87512 3.92234 3.97172 4.03577 4.09787 4.10786 4.16846 4.23912 4.29373 4.31892 4.37178 4.42146 4.53734 4.58173 4.61481 4.69971 4.77201 4.80877 4.82865 4.92199 4.94896 4.98046 5.00902 5.06973 5.12110 5.21165 5.23964 5.30033 5.34034 5.38902 5.41494 5.43868 5.45321 5.50706 5.63891 5.98525 6.11310 6.16709 6.56700 6.85721 7.02538 7.26410 7.66894 8.29342 9.18755 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.003145 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.507817 B = 8901.735646 C =11094.505961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.099 4.099 4 C 0.054 3.946 5 N -0.535 5.535 6 C 0.055 3.945 7 C -0.117 4.117 8 C -0.112 4.112 9 C -0.104 4.104 10 C 0.080 3.920 11 H 0.081 0.919 12 C 0.514 3.486 13 O -0.564 6.564 14 N -0.702 5.702 15 C 0.155 3.845 16 H 0.068 0.932 17 C 0.134 3.866 18 N -0.621 5.621 19 C -0.251 4.251 20 H 0.080 0.920 21 C -0.060 4.060 22 N -0.947 5.947 23 Si 0.981 3.019 24 H -0.281 1.281 25 H -0.290 1.290 26 H -0.273 1.273 27 C 0.162 3.838 28 C 0.092 3.908 29 H 0.096 0.904 30 O -0.569 6.569 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.083 0.917 48 H 0.415 0.585 49 H 0.042 0.958 50 H 0.029 0.971 51 H 0.250 0.750 52 H 0.020 0.980 53 H 0.027 0.973 54 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.874 13.515 21.618 25.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.137 4.137 4 C -0.074 4.074 5 N -0.260 5.260 6 C -0.071 4.071 7 C -0.155 4.155 8 C -0.150 4.150 9 C -0.143 4.143 10 C -0.031 4.031 11 H 0.099 0.901 12 C 0.300 3.700 13 O -0.442 6.442 14 N -0.355 5.355 15 C 0.048 3.952 16 H 0.086 0.914 17 C 0.007 3.993 18 N -0.349 5.349 19 C -0.380 4.380 20 H 0.098 0.902 21 C -0.253 4.253 22 N -0.595 5.595 23 Si 0.808 3.192 24 H -0.207 1.207 25 H -0.216 1.216 26 H -0.199 1.199 27 C 0.036 3.964 28 C 0.031 3.969 29 H 0.113 0.887 30 O -0.377 6.377 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.102 0.898 48 H 0.252 0.748 49 H 0.060 0.940 50 H 0.048 0.952 51 H 0.059 0.941 52 H 0.038 0.962 53 H 0.045 0.955 54 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -6.377 13.805 20.732 25.711 hybrid contribution 1.213 -1.759 -0.714 2.253 sum -5.164 12.046 20.018 23.927 Atomic orbital electron populations 1.21727 0.94780 1.01976 1.01999 1.21489 0.96845 0.96386 1.01532 1.21424 0.93648 0.96677 1.01990 1.22154 0.96839 0.88366 0.99994 1.61637 1.18048 1.18657 1.27692 1.22263 1.02087 0.95512 0.87274 1.21625 0.96602 0.94922 1.02303 1.21563 0.97131 1.01360 0.94929 1.21555 1.01598 0.91425 0.99697 1.21603 0.91510 0.98238 0.91768 0.90107 1.21133 0.81960 0.77422 0.89443 1.90714 1.38760 1.59614 1.55081 1.45748 1.14996 1.56567 1.18197 1.21680 0.96004 0.92295 0.85202 0.91408 1.21895 0.95526 0.90802 0.91093 1.44500 1.32063 1.22271 1.36084 1.19403 1.10859 0.96324 1.11411 0.90206 1.25650 0.97898 1.02526 0.99225 1.70120 1.20540 1.39970 1.28921 0.85133 0.77120 0.79149 0.77799 1.20697 1.21581 1.19912 1.21628 0.90522 0.88715 0.95567 1.23159 0.94701 0.84889 0.94108 0.88665 1.86441 1.36728 1.39132 1.75350 0.93452 0.91529 0.92270 0.91127 0.93994 0.93448 0.90581 0.93652 0.93402 0.89740 0.93652 0.92312 0.89141 0.90101 0.90418 0.92721 0.89842 0.74785 0.94030 0.95227 0.94084 0.96211 0.95468 0.75378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.91 71.98 0.71 -1.93 16 2 C -0.12 -2.61 5.93 30.59 0.18 -2.43 16 3 C -0.10 -2.22 5.32 30.60 0.16 -2.05 16 4 C 0.05 1.31 4.60 86.30 0.40 1.70 16 5 N -0.53 -12.03 4.18 -875.51 -3.66 -15.69 16 6 C 0.06 0.85 5.29 86.32 0.46 1.31 16 7 C -0.12 -1.49 6.09 30.64 0.19 -1.31 16 8 C -0.11 -1.37 6.00 30.67 0.18 -1.18 16 9 C -0.10 -1.91 5.36 30.65 0.16 -1.74 16 10 C 0.08 1.75 2.23 44.19 0.10 1.85 16 11 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 12 C 0.51 15.74 5.63 87.65 0.49 16.23 16 13 O -0.56 -23.10 15.07 -3.05 -0.05 -23.14 16 14 N -0.70 -20.09 5.20 -435.96 -2.27 -22.35 16 15 C 0.16 5.90 3.15 46.39 0.15 6.05 16 16 H 0.07 3.13 7.54 -2.39 -0.02 3.11 16 17 C 0.13 5.82 6.93 86.86 0.60 6.42 16 18 N -0.62 -32.77 3.39 -691.98 -2.35 -35.12 16 19 C -0.25 -14.47 10.28 84.03 0.86 -13.60 16 20 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 21 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 22 N -0.95 -56.48 10.31 21.65 0.22 -56.26 16 23 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 27 C 0.16 7.86 5.15 86.73 0.45 8.31 16 28 C 0.09 3.30 3.98 31.78 0.13 3.42 16 29 H 0.10 2.75 8.00 -2.39 -0.02 2.73 16 30 O -0.57 -19.06 13.39 -148.98 -1.99 -21.06 16 31 H 0.05 0.91 8.14 -2.38 -0.02 0.90 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.38 6.83 -2.39 -0.02 1.36 16 38 H 0.05 0.93 8.00 -2.39 -0.02 0.92 16 39 H 0.05 1.50 5.67 -2.39 -0.01 1.49 16 40 H 0.08 1.20 6.71 -2.39 -0.02 1.19 16 41 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.41 8.60 8.57 -92.71 -0.79 7.80 16 49 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 52 H 0.02 1.11 7.29 -2.39 -0.02 1.09 16 53 H 0.03 1.42 7.51 -2.39 -0.02 1.40 16 54 H 0.40 9.74 9.12 -74.06 -0.68 9.07 16 Total: -1.00 -75.73 415.41 -2.97 -78.70 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.59 Total: 28.65 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 5.69 Total: 18.09 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -8.05 Total: -129.42 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -2.04 Total: -44.20 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -75.73 -2.97 -78.70 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077980497.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.254 kcal (2) G-P(sol) polarization free energy of solvation -75.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds