Wall clock time and date at job start Tue Mar 31 2020 23:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47416 * 2 1 4 4 C 1.52997 * 109.47416 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47335 * 180.02562 * 4 3 2 6 6 C 1.47017 * 111.00273 * 75.68261 * 5 4 3 7 7 C 1.53087 * 109.29544 * 182.41477 * 6 5 4 8 8 O 1.43016 * 109.26452 * 303.13417 * 7 6 5 9 9 C 1.43018 * 113.73790 * 58.66651 * 8 7 6 10 10 C 1.47102 * 111.06231 * 199.30447 * 5 4 3 11 11 H 1.08996 * 109.49345 * 297.56485 * 10 5 4 12 12 C 1.50695 * 109.53128 * 57.66117 * 10 5 4 13 13 O 1.21287 * 120.00089 * 27.96069 * 12 10 5 14 14 N 1.34769 * 120.00288 * 207.95651 * 12 10 5 15 15 C 1.46504 * 120.00487 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.47374 * 180.02562 * 15 14 12 17 17 H 1.08999 * 112.84841 * 45.33189 * 16 15 14 18 18 C 1.53782 * 113.61072 * 176.52687 * 16 15 14 19 19 C 1.53781 * 87.07624 * 139.98305 * 18 16 15 20 20 H 1.08998 * 113.61867 * 89.11576 * 19 18 16 21 21 N 1.46507 * 113.61231 * 219.93249 * 19 18 16 22 22 C 1.36937 * 120.00208 * 204.99727 * 21 19 18 23 23 H 1.08001 * 120.00085 * 0.02562 * 22 21 19 24 24 C 1.38810 * 119.99904 * 179.97438 * 22 21 19 25 25 N 1.31620 * 119.99494 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00127 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.47107 * 89.99995 * 26 24 22 28 28 H 1.48506 * 109.47229 * 209.99892 * 26 24 22 29 29 H 1.48495 * 109.47056 * 330.00067 * 26 24 22 30 30 C 1.53781 * 113.61124 * 274.13493 * 16 15 14 31 31 H 1.08997 * 109.47316 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46849 * 300.00035 * 1 2 3 33 33 H 1.09006 * 109.46867 * 59.99681 * 1 2 3 34 34 H 1.09009 * 109.47194 * 240.00458 * 2 1 3 35 35 H 1.08999 * 109.47508 * 120.00371 * 2 1 3 36 36 H 1.09009 * 109.46565 * 60.00073 * 3 2 1 37 37 H 1.08999 * 109.47085 * 300.00630 * 3 2 1 38 38 H 1.09000 * 109.46849 * 59.99965 * 4 3 2 39 39 H 1.08997 * 109.47025 * 300.00187 * 4 3 2 40 40 H 1.09007 * 109.49988 * 62.46189 * 6 5 4 41 41 H 1.08996 * 109.50524 * 302.38174 * 6 5 4 42 42 H 1.09004 * 109.50832 * 63.06899 * 7 6 5 43 43 H 1.09001 * 109.50623 * 183.19644 * 7 6 5 44 44 H 1.08999 * 109.50506 * 61.26985 * 9 8 7 45 45 H 1.08997 * 109.50917 * 181.40072 * 9 8 7 46 46 H 0.97006 * 119.99846 * 0.02562 * 14 12 10 47 47 H 1.09002 * 109.46521 * 299.99982 * 15 14 12 48 48 H 1.08994 * 109.47342 * 59.99544 * 15 14 12 49 49 H 1.09002 * 113.61421 * 254.52412 * 18 16 15 50 50 H 1.08992 * 113.61699 * 25.43341 * 18 16 15 51 51 H 0.96997 * 119.99596 * 25.00057 * 21 19 18 52 52 H 0.97005 * 119.99738 * 179.97438 * 25 24 22 53 53 H 1.08999 * 113.61637 * 334.56542 * 30 16 15 54 54 H 1.08996 * 113.61249 * 105.47489 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0013 6 6 3.9148 3.4370 1.3313 7 6 4.3795 4.8945 1.2731 8 8 5.7287 4.9411 0.8011 9 6 5.9068 4.3572 -0.4922 10 6 5.4576 2.8941 -0.4519 11 1 6.0909 2.3379 0.2391 12 6 5.5695 2.2952 -1.8302 13 8 4.6178 2.3211 -2.5818 14 7 6.7269 1.7310 -2.2279 15 6 6.8359 1.1493 -3.5681 16 6 8.2423 0.5796 -3.7640 17 1 8.5856 -0.0035 -2.9095 18 6 8.4360 -0.1322 -5.1134 19 6 9.8296 0.5159 -5.1658 20 1 10.6082 -0.0839 -4.6947 21 7 10.2062 0.9907 -6.4997 22 6 11.5282 1.1083 -6.8367 23 1 12.2933 0.8507 -6.1193 24 6 11.8849 1.5576 -8.1007 25 7 13.1556 1.6701 -8.4247 26 14 10.5616 2.0025 -9.3417 27 1 10.2138 3.4394 -9.2009 28 1 11.0652 1.7474 -10.7153 29 1 9.3537 1.1745 -9.0956 30 6 9.2655 1.6189 -4.2517 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6767 1.9564 -0.8899 38 1 3.9337 0.9285 -0.8891 39 1 3.9329 0.9288 0.8908 40 1 4.5236 2.8893 2.0508 41 1 2.8691 3.4001 1.6365 42 1 3.7368 5.4546 0.5938 43 1 4.3271 5.3333 2.2695 44 1 5.3085 4.9016 -1.2228 45 1 6.9589 4.4073 -0.7725 46 1 7.4880 1.7101 -1.6268 47 1 6.1022 0.3507 -3.6782 48 1 6.6485 1.9204 -4.3153 49 1 8.4628 -1.2190 -5.0339 50 1 7.7612 0.2196 -5.8935 51 1 9.5190 1.2217 -7.1441 52 1 13.4050 1.9837 -9.3081 53 1 8.8177 2.4504 -4.7960 54 1 9.9607 1.9436 -3.4777 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086158552.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:26 Heat of formation + Delta-G solvation = -75.182400 kcal Electronic energy + Delta-G solvation = -30044.215592 eV Core-core repulsion = 26015.711842 eV Total energy + Delta-G solvation = -4028.503750 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.65296 -40.29328 -39.44578 -37.56197 -36.11348 -35.23753 -35.03018 -32.93910 -32.44769 -30.65682 -28.94204 -27.39404 -26.47461 -26.03141 -25.20271 -23.66553 -22.65035 -22.15476 -21.83972 -21.22303 -20.60672 -19.36370 -18.46285 -17.73558 -17.50860 -17.08551 -16.61246 -16.51491 -16.32793 -16.11594 -15.95455 -15.55710 -15.49993 -15.19086 -15.12071 -14.71658 -14.49613 -14.39599 -13.96464 -13.87948 -13.81021 -13.36963 -13.25564 -13.18420 -13.05079 -12.95654 -12.68658 -12.50776 -12.22347 -12.15981 -12.01790 -11.92596 -11.91488 -11.72129 -11.65771 -11.56617 -11.37462 -11.16037 -10.98366 -10.86473 -10.59950 -10.09811 -9.44643 -9.26541 -8.02965 -5.35131 1.37189 1.39628 1.46856 1.48397 1.96867 2.47501 2.59992 2.89285 3.27479 3.57974 3.60873 3.66673 3.74286 3.83603 3.88513 3.89678 3.96829 4.08106 4.09734 4.21720 4.25249 4.27374 4.28877 4.37661 4.38901 4.52161 4.55039 4.62520 4.63402 4.69903 4.75866 4.78494 4.88890 4.94468 4.95584 4.96875 4.97281 5.03187 5.05464 5.22159 5.23527 5.32315 5.36388 5.42130 5.44224 5.65698 5.76822 5.78267 5.92025 6.02195 6.23049 6.52238 7.07993 7.19462 7.86554 8.03892 9.18481 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.002084 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.663759 B =13429.893520 C =14506.581137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.102 4.102 4 C 0.058 3.942 5 N -0.533 5.533 6 C 0.021 3.979 7 C 0.055 3.945 8 O -0.389 6.389 9 C 0.079 3.921 10 C 0.039 3.961 11 H 0.087 0.913 12 C 0.517 3.483 13 O -0.560 6.560 14 N -0.713 5.713 15 C 0.140 3.860 16 C -0.096 4.096 17 H 0.119 0.881 18 C -0.136 4.136 19 C 0.145 3.855 20 H 0.077 0.923 21 N -0.744 5.744 22 C -0.230 4.230 23 H 0.060 0.940 24 C -0.067 4.067 25 N -0.984 5.984 26 Si 0.953 3.047 27 H -0.281 1.281 28 H -0.297 1.297 29 H -0.252 1.252 30 C -0.154 4.154 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.106 0.894 42 H 0.056 0.944 43 H 0.125 0.875 44 H 0.052 0.948 45 H 0.118 0.882 46 H 0.415 0.585 47 H 0.066 0.934 48 H 0.051 0.949 49 H 0.081 0.919 50 H 0.075 0.925 51 H 0.365 0.635 52 H 0.257 0.743 53 H 0.065 0.935 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.841 -0.128 26.266 36.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.140 4.140 4 C -0.070 4.070 5 N -0.259 5.259 6 C -0.106 4.106 7 C -0.021 4.021 8 O -0.307 6.307 9 C 0.001 3.999 10 C -0.074 4.074 11 H 0.104 0.896 12 C 0.303 3.697 13 O -0.437 6.437 14 N -0.366 5.366 15 C 0.016 3.984 16 C -0.115 4.115 17 H 0.137 0.863 18 C -0.176 4.176 19 C 0.036 3.964 20 H 0.095 0.905 21 N -0.385 5.385 22 C -0.361 4.361 23 H 0.078 0.922 24 C -0.258 4.258 25 N -0.634 5.634 26 Si 0.780 3.220 27 H -0.208 1.208 28 H -0.223 1.223 29 H -0.177 1.177 30 C -0.195 4.195 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.124 0.876 42 H 0.075 0.925 43 H 0.143 0.857 44 H 0.070 0.930 45 H 0.136 0.864 46 H 0.252 0.748 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.099 0.901 50 H 0.094 0.906 51 H 0.198 0.802 52 H 0.066 0.934 53 H 0.083 0.917 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.411 0.218 25.505 36.003 hybrid contribution 0.473 -0.191 -0.821 0.967 sum -24.938 0.027 24.683 35.088 Atomic orbital electron populations 1.21741 0.95052 1.02007 1.01915 1.21472 0.96589 0.96083 1.01853 1.21453 0.93396 0.97057 1.02130 1.22171 0.96880 0.87509 1.00419 1.61972 1.17089 1.19871 1.26969 1.22938 1.03530 0.95807 0.88345 1.22925 0.82416 0.95271 1.01492 1.88018 1.29039 1.80032 1.33643 1.22534 1.02654 0.89080 0.85652 1.22283 0.92110 0.99243 0.93732 0.89581 1.20510 0.82536 0.77803 0.88891 1.90719 1.38851 1.58159 1.55985 1.45979 1.14442 1.59013 1.17166 1.21236 0.96783 0.97101 0.83278 1.22461 0.92908 0.97820 0.98340 0.86285 1.23354 0.96900 1.00640 0.96673 1.21973 0.94721 0.94985 0.84718 0.90450 1.42799 1.03033 1.79515 1.13166 1.19130 0.84196 1.35261 0.97552 0.92214 1.25508 0.97937 1.02624 0.99763 1.69882 1.16857 1.55097 1.21595 0.85439 0.79652 0.78465 0.78404 1.20751 1.22346 1.17688 1.23760 0.98295 0.97788 0.99616 0.92175 0.91983 0.93342 0.93116 0.91212 0.90922 0.93096 0.92548 0.93436 0.93010 0.87620 0.92524 0.85734 0.93009 0.86436 0.74836 0.91604 0.93013 0.90056 0.90613 0.80223 0.93442 0.91651 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.12 -1.59 5.93 30.59 0.18 -1.41 16 3 C -0.10 -1.53 5.32 30.59 0.16 -1.37 16 4 C 0.06 0.95 4.64 86.30 0.40 1.35 16 5 N -0.53 -9.16 4.21 -874.20 -3.68 -12.84 16 6 C 0.02 0.25 5.47 86.31 0.47 0.72 16 7 C 0.06 0.69 7.01 72.01 0.50 1.19 16 8 O -0.39 -6.67 10.83 -148.98 -1.61 -8.28 16 9 C 0.08 1.34 6.28 72.02 0.45 1.79 16 10 C 0.04 0.65 2.38 44.16 0.10 0.76 16 11 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 12 C 0.52 11.20 5.69 87.66 0.50 11.70 16 13 O -0.56 -17.03 15.65 -3.05 -0.05 -17.08 16 14 N -0.71 -12.62 5.56 -463.07 -2.57 -15.19 16 15 C 0.14 2.95 5.50 86.38 0.47 3.43 16 16 C -0.10 -1.99 3.75 -10.27 -0.04 -2.03 16 17 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 18 C -0.14 -3.57 7.40 31.12 0.23 -3.34 16 19 C 0.14 5.02 4.48 45.58 0.20 5.22 16 20 H 0.08 2.76 8.10 -2.39 -0.02 2.74 16 21 N -0.74 -33.90 5.21 -320.15 -1.67 -35.57 16 22 C -0.23 -12.98 10.45 84.03 0.88 -12.10 16 23 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 24 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 25 N -0.98 -63.17 13.97 21.65 0.30 -62.87 16 26 Si 0.95 45.86 27.74 68.60 1.90 47.76 16 27 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 28 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 29 H -0.25 -10.96 6.52 99.48 0.65 -10.32 16 30 C -0.15 -4.32 7.45 31.18 0.23 -4.09 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.87 6.89 -2.38 -0.02 0.86 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.20 5.97 -2.39 -0.01 1.18 16 39 H 0.05 0.64 7.99 -2.39 -0.02 0.62 16 40 H 0.05 0.56 8.13 -2.38 -0.02 0.54 16 41 H 0.11 0.95 6.81 -2.39 -0.02 0.94 16 42 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.41 5.02 8.47 -92.70 -0.79 4.23 16 47 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 1.32 7.88 -2.39 -0.02 1.30 16 49 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.08 2.07 8.08 -2.39 -0.02 2.05 16 51 H 0.36 16.15 5.79 -92.71 -0.54 15.62 16 52 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 53 H 0.06 2.03 7.92 -2.39 -0.02 2.01 16 54 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -74.15 421.56 -1.94 -76.10 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -0.51 Total: 30.64 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 5.94 Total: -2.68 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -7.62 Total: -126.47 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -1.66 Total: -25.36 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.76 kcal Total: -74.15 -1.94 -76.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086158552.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.916 kcal (2) G-P(sol) polarization free energy of solvation -74.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds