Wall clock time and date at job start Tue Mar 31 2020 23:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47143 * 2 1 4 4 C 1.53006 * 109.47205 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47358 * 180.02562 * 4 3 2 6 6 C 1.47008 * 111.00135 * 313.63808 * 5 4 3 7 7 C 1.53100 * 109.26070 * 177.60561 * 6 5 4 8 8 O 1.43013 * 109.25694 * 56.84779 * 7 6 5 9 9 C 1.43017 * 113.73840 * 301.32984 * 8 7 6 10 10 C 1.47011 * 111.00388 * 189.99866 * 5 4 3 11 11 H 1.08994 * 109.50850 * 62.40988 * 10 5 4 12 12 C 1.50702 * 109.50414 * 302.32659 * 10 5 4 13 13 O 1.21285 * 120.00118 * 0.02562 * 12 10 5 14 14 N 1.34780 * 120.00219 * 179.97438 * 12 10 5 15 15 C 1.46500 * 120.00380 * 180.02562 * 14 12 10 16 16 C 1.52994 * 109.47262 * 180.02562 * 15 14 12 17 17 H 1.09003 * 112.85156 * 43.79901 * 16 15 14 18 18 C 1.53781 * 113.61620 * 174.99790 * 16 15 14 19 19 C 1.53781 * 87.08131 * 139.98066 * 18 16 15 20 20 H 1.09000 * 113.61724 * 89.20383 * 19 18 16 21 21 N 1.46506 * 113.61270 * 220.02225 * 19 18 16 22 22 C 1.36938 * 119.99589 * 203.47195 * 21 19 18 23 23 H 1.07999 * 120.00325 * 359.97438 * 22 21 19 24 24 C 1.38815 * 119.99817 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99673 * 359.71804 * 24 22 21 26 26 Si 1.86795 * 120.00115 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47163 * 59.99668 * 26 24 22 28 28 H 1.48505 * 109.47234 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47124 * 299.99692 * 26 24 22 30 30 C 1.53782 * 87.17496 * 334.60808 * 19 18 16 31 31 H 1.08998 * 109.47354 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46754 * 300.00149 * 1 2 3 33 33 H 1.09000 * 109.46979 * 59.99584 * 1 2 3 34 34 H 1.09007 * 109.47063 * 240.00099 * 2 1 3 35 35 H 1.09000 * 109.46979 * 120.00416 * 2 1 3 36 36 H 1.09001 * 109.47417 * 60.00257 * 3 2 1 37 37 H 1.09000 * 109.47523 * 300.00083 * 3 2 1 38 38 H 1.08995 * 109.47335 * 59.99630 * 4 3 2 39 39 H 1.09000 * 109.46883 * 299.99539 * 4 3 2 40 40 H 1.09007 * 109.50670 * 297.53951 * 6 5 4 41 41 H 1.08999 * 109.51271 * 57.66719 * 6 5 4 42 42 H 1.09005 * 109.50774 * 176.77576 * 7 6 5 43 43 H 1.08993 * 109.50742 * 296.87052 * 7 6 5 44 44 H 1.09011 * 109.50333 * 298.73550 * 9 8 7 45 45 H 1.08995 * 109.51261 * 178.61201 * 9 8 7 46 46 H 0.97002 * 119.99248 * 0.02562 * 14 12 10 47 47 H 1.08997 * 109.47115 * 59.99481 * 15 14 12 48 48 H 1.08999 * 109.46704 * 300.00016 * 15 14 12 49 49 H 1.09003 * 113.61141 * 25.42888 * 18 16 15 50 50 H 1.08993 * 113.61478 * 254.52829 * 18 16 15 51 51 H 0.96999 * 120.00080 * 23.46685 * 21 19 18 52 52 H 0.97000 * 120.00043 * 180.02562 * 25 24 22 53 53 H 1.08994 * 113.61532 * 139.93563 * 30 19 18 54 54 H 1.09000 * 113.61410 * 270.84686 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.3420 3.6404 -0.9925 7 6 3.8406 5.0860 -0.9168 8 8 5.2560 5.1081 -1.1204 9 6 5.9864 4.3269 -0.1708 10 6 5.5096 2.8738 -0.2389 11 1 5.7293 2.4637 -1.2246 12 6 6.2191 2.0615 0.8136 13 8 5.5809 1.4986 1.6778 14 7 7.5630 1.9597 0.7941 15 6 8.2527 1.1696 1.8169 16 6 9.7615 1.2185 1.5677 17 1 10.1179 2.2192 1.3233 18 6 10.5891 0.5191 2.6589 19 6 11.4806 -0.0191 1.5274 20 1 12.3088 0.6419 1.2720 21 7 11.9013 -1.4089 1.7224 22 6 13.0334 -1.8740 1.1084 23 1 13.6160 -1.2166 0.4801 24 6 13.4318 -3.1910 1.2926 25 7 12.7242 -3.9909 2.0620 26 14 14.9757 -3.8258 0.4545 27 1 16.1461 -3.0305 0.9050 28 1 15.1810 -5.2529 0.8102 29 1 14.8278 -3.6984 -1.0175 30 6 10.2635 0.1316 0.5997 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8899 38 1 3.9330 0.9287 -0.8908 39 1 3.9337 0.9285 0.8892 40 1 3.5270 3.2434 -1.9907 41 1 2.2730 3.6126 -0.7815 42 1 3.3525 5.6803 -1.6894 43 1 3.6067 5.5008 0.0636 44 1 5.8156 4.7195 0.8317 45 1 7.0502 4.3723 -0.4036 46 1 8.0733 2.4096 0.1027 47 1 7.9097 0.1361 1.7704 48 1 8.0341 1.5810 2.8024 49 1 10.0415 -0.2588 3.1910 50 1 11.1021 1.2100 3.3279 51 1 11.3779 -1.9994 2.2864 52 1 13.0027 -4.9111 2.1911 53 1 10.5139 0.5101 -0.3912 54 1 9.6267 -0.7525 0.5678 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086158553.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:30 Heat of formation + Delta-G solvation = -72.066142 kcal Electronic energy + Delta-G solvation = -29952.823069 eV Core-core repulsion = 25924.454450 eV Total energy + Delta-G solvation = -4028.368619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.68581 -40.24709 -39.42653 -37.66625 -36.04859 -35.15538 -35.04817 -32.81445 -32.02967 -30.56952 -28.77729 -27.35616 -26.45845 -26.07847 -25.41318 -23.68468 -22.81235 -22.32412 -21.52882 -21.15646 -20.42058 -19.07257 -18.47014 -17.62333 -17.35218 -17.05597 -16.77810 -16.52397 -16.29349 -16.07858 -15.86134 -15.72721 -15.45632 -15.20007 -15.07559 -14.97506 -14.52251 -14.35937 -13.85493 -13.66714 -13.41991 -13.31279 -13.23323 -13.01709 -12.93975 -12.89286 -12.61239 -12.57641 -12.27271 -12.23593 -12.12028 -12.03258 -11.86486 -11.64537 -11.56920 -11.53671 -11.38109 -11.06417 -10.93552 -10.80785 -10.47620 -10.09817 -9.40932 -8.97447 -7.94392 -5.22683 1.46930 1.49937 1.50963 1.56002 1.97619 2.56754 2.61951 2.91020 3.37221 3.61292 3.64365 3.75200 3.75648 3.89217 3.91931 3.95001 3.97959 4.05644 4.16867 4.24503 4.26668 4.31297 4.35940 4.39456 4.43201 4.54036 4.57348 4.64368 4.67708 4.72351 4.78115 4.79721 4.89230 4.94450 4.97107 4.98147 4.99206 5.05489 5.11659 5.21042 5.23373 5.33128 5.37820 5.40989 5.46505 5.53620 5.74238 5.78284 5.94544 6.04943 6.27849 6.52150 7.20582 7.33202 8.12108 8.33478 9.28928 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.001994 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.648543 B =14038.840187 C =15300.889992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.110 4.110 4 C 0.044 3.956 5 N -0.528 5.528 6 C 0.013 3.987 7 C 0.058 3.942 8 O -0.390 6.390 9 C 0.079 3.921 10 C 0.034 3.966 11 H 0.081 0.919 12 C 0.516 3.484 13 O -0.560 6.560 14 N -0.711 5.711 15 C 0.141 3.859 16 C -0.094 4.094 17 H 0.125 0.875 18 C -0.136 4.136 19 C 0.142 3.858 20 H 0.081 0.919 21 N -0.731 5.731 22 C -0.242 4.242 23 H 0.079 0.921 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.974 3.026 27 H -0.276 1.276 28 H -0.298 1.298 29 H -0.278 1.278 30 C -0.154 4.154 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.021 0.979 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.109 0.891 42 H 0.124 0.876 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.126 0.874 46 H 0.415 0.585 47 H 0.044 0.956 48 H 0.067 0.933 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.371 0.629 52 H 0.250 0.750 53 H 0.068 0.932 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.638 21.179 -7.727 31.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.148 4.148 4 C -0.083 4.083 5 N -0.254 5.254 6 C -0.114 4.114 7 C -0.019 4.019 8 O -0.308 6.308 9 C 0.002 3.998 10 C -0.078 4.078 11 H 0.099 0.901 12 C 0.302 3.698 13 O -0.438 6.438 14 N -0.364 5.364 15 C 0.017 3.983 16 C -0.113 4.113 17 H 0.142 0.858 18 C -0.175 4.175 19 C 0.033 3.967 20 H 0.099 0.901 21 N -0.368 5.368 22 C -0.374 4.374 23 H 0.097 0.903 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.803 3.197 27 H -0.202 1.202 28 H -0.225 1.225 29 H -0.204 1.204 30 C -0.194 4.194 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.040 0.960 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.144 0.856 46 H 0.252 0.748 47 H 0.063 0.937 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.098 0.902 51 H 0.203 0.797 52 H 0.059 0.941 53 H 0.086 0.914 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.898 21.071 -6.890 31.871 hybrid contribution 0.942 -1.755 -0.799 2.146 sum -21.957 19.316 -7.689 30.238 Atomic orbital electron populations 1.21729 0.94488 1.02031 1.02224 1.21482 0.96941 0.96330 1.01583 1.21667 0.93073 0.97329 1.02683 1.22453 0.96455 0.88280 1.01087 1.62072 1.01371 1.12371 1.49537 1.23038 1.00671 0.94246 0.93465 1.22920 0.80486 0.95231 1.03258 1.88009 1.19342 1.69463 1.54004 1.22646 0.97458 0.85924 0.93785 1.22329 0.90263 0.98395 0.96823 0.90095 1.20581 0.82527 0.80861 0.85809 1.90634 1.66126 1.48028 1.39016 1.45912 1.06060 1.52280 1.32104 1.21208 0.91105 0.94698 0.91284 1.22505 0.91946 0.99687 0.97149 0.85753 1.23305 0.97728 0.99496 0.97021 1.21976 0.93992 0.85300 0.95467 0.90135 1.42636 1.28545 1.08507 1.57119 1.19698 1.01455 0.94671 1.21575 0.90276 1.25613 1.02599 0.97196 1.01913 1.69821 1.42232 1.06233 1.44041 0.85204 0.79639 0.76628 0.78259 1.20238 1.22484 1.20362 1.23752 0.99325 0.97567 0.98786 0.92461 0.92532 0.91938 0.92298 0.93066 0.91525 0.90534 0.96041 0.90023 0.93804 0.87258 0.85861 0.92016 0.92085 0.85625 0.74791 0.93709 0.91494 0.91610 0.90195 0.79707 0.94137 0.91351 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.13 -1.98 5.93 30.59 0.18 -1.80 16 3 C -0.11 -1.75 4.48 30.59 0.14 -1.62 16 4 C 0.04 0.93 4.62 86.31 0.40 1.33 16 5 N -0.53 -10.08 4.51 -874.41 -3.94 -14.02 16 6 C 0.01 0.18 4.94 86.32 0.43 0.60 16 7 C 0.06 0.69 7.01 72.02 0.50 1.19 16 8 O -0.39 -6.15 10.83 -148.98 -1.61 -7.76 16 9 C 0.08 1.15 6.16 72.01 0.44 1.60 16 10 C 0.03 0.62 2.36 44.18 0.10 0.72 16 11 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 12 C 0.52 11.96 6.88 87.66 0.60 12.56 16 13 O -0.56 -17.68 13.70 -3.05 -0.04 -17.72 16 14 N -0.71 -13.66 5.46 -463.06 -2.53 -16.19 16 15 C 0.14 3.34 5.51 86.38 0.48 3.81 16 16 C -0.09 -2.16 3.75 -10.21 -0.04 -2.19 16 17 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 18 C -0.14 -4.03 7.39 31.12 0.23 -3.80 16 19 C 0.14 5.25 4.47 45.52 0.20 5.46 16 20 H 0.08 2.87 8.11 -2.39 -0.02 2.86 16 21 N -0.73 -36.62 5.41 -320.43 -1.73 -38.35 16 22 C -0.24 -13.35 9.97 84.03 0.84 -12.51 16 23 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 24 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 25 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16 26 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 29 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 30 C -0.15 -4.73 7.45 31.18 0.23 -4.50 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 0.96 6.28 -2.39 -0.01 0.94 16 38 H 0.02 0.46 8.08 -2.39 -0.02 0.44 16 39 H 0.08 2.28 5.49 -2.39 -0.01 2.27 16 40 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.11 1.15 6.05 -2.39 -0.01 1.14 16 42 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.13 1.19 7.68 -2.39 -0.02 1.18 16 46 H 0.42 5.38 7.97 -92.71 -0.74 4.64 16 47 H 0.04 1.31 7.85 -2.39 -0.02 1.29 16 48 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 50 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.37 20.30 7.91 -92.71 -0.73 19.57 16 52 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 53 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 54 H 0.05 1.93 7.90 -2.39 -0.02 1.91 16 Total: -1.00 -71.64 419.84 -2.22 -73.86 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.59 Total: 36.46 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 5.92 Total: -4.49 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -7.92 Total: -128.50 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -1.65 Total: -25.48 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -71.64 -2.22 -73.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086158553.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.795 kcal (2) G-P(sol) polarization free energy of solvation -71.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds