Wall clock time and date at job start Tue Mar 31 2020 23:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 C 1.52997 * 109.47304 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47583 * 179.97438 * 4 3 2 6 6 C 1.47009 * 110.99726 * 288.17249 * 5 4 3 7 7 C 1.53096 * 109.25611 * 177.60372 * 6 5 4 8 8 O 1.43016 * 109.25679 * 56.84918 * 7 6 5 9 9 C 1.43023 * 113.77652 * 301.35097 * 8 7 6 10 10 C 1.47008 * 111.00180 * 164.53335 * 5 4 3 11 11 H 1.09001 * 109.50565 * 62.41413 * 10 5 4 12 12 C 1.50704 * 109.51050 * 302.32792 * 10 5 4 13 13 O 1.21283 * 119.99574 * 331.69699 * 12 10 5 14 14 N 1.34770 * 120.00034 * 151.68948 * 12 10 5 15 15 C 1.46505 * 120.00225 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47035 * 180.02562 * 15 14 12 17 17 H 1.08990 * 112.85535 * 316.19812 * 16 15 14 18 18 C 1.53788 * 113.61129 * 87.50884 * 16 15 14 19 19 C 1.53781 * 87.08037 * 139.97474 * 18 16 15 20 20 H 1.08998 * 113.69114 * 219.99959 * 19 18 16 21 21 N 1.46503 * 113.61166 * 89.11577 * 19 18 16 22 22 C 1.36939 * 119.99866 * 107.50481 * 21 19 18 23 23 H 1.07993 * 120.00319 * 359.97438 * 22 21 19 24 24 C 1.38818 * 119.99698 * 180.02562 * 22 21 19 25 25 N 1.31614 * 119.99942 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99883 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47233 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.46906 * 299.99703 * 26 24 22 29 29 H 1.48502 * 109.47155 * 59.99409 * 26 24 22 30 30 C 1.53780 * 87.08429 * 334.56757 * 19 18 16 31 31 H 1.08998 * 109.47621 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47253 * 300.00320 * 1 2 3 33 33 H 1.09003 * 109.46930 * 59.99818 * 1 2 3 34 34 H 1.09000 * 109.47253 * 239.99679 * 2 1 3 35 35 H 1.09003 * 109.46930 * 120.00182 * 2 1 3 36 36 H 1.09000 * 109.47227 * 59.99663 * 3 2 1 37 37 H 1.09003 * 109.47276 * 299.99970 * 3 2 1 38 38 H 1.09000 * 109.47253 * 59.99679 * 4 3 2 39 39 H 1.09003 * 109.46930 * 300.00182 * 4 3 2 40 40 H 1.08994 * 109.50805 * 297.53987 * 6 5 4 41 41 H 1.09002 * 109.50532 * 57.62985 * 6 5 4 42 42 H 1.09003 * 109.51066 * 176.78455 * 7 6 5 43 43 H 1.09000 * 109.50960 * 296.91590 * 7 6 5 44 44 H 1.08997 * 109.47153 * 298.69182 * 9 8 7 45 45 H 1.09001 * 109.54590 * 178.56434 * 9 8 7 46 46 H 0.97002 * 120.00343 * 0.02562 * 14 12 10 47 47 H 1.08998 * 109.46514 * 60.00616 * 15 14 12 48 48 H 1.08994 * 109.46936 * 300.00695 * 15 14 12 49 49 H 1.08997 * 113.61519 * 25.43077 * 18 16 15 50 50 H 1.09001 * 113.61331 * 254.52520 * 18 16 15 51 51 H 0.96996 * 120.00195 * 287.49994 * 21 19 18 52 52 H 0.96999 * 119.99889 * 179.97438 * 25 24 22 53 53 H 1.09001 * 113.61676 * 139.97655 * 30 19 18 54 54 H 1.08997 * 113.61253 * 270.88139 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0598 2.8274 -0.0013 6 6 3.8313 3.4664 -1.3054 7 6 4.3005 4.9223 -1.2434 8 8 5.6769 4.9582 -0.8566 9 6 5.9364 4.3447 0.4091 10 6 5.4826 2.8833 0.3641 11 1 6.0703 2.3423 -0.3776 12 6 5.6794 2.2534 1.7190 13 8 4.7789 2.2683 2.5312 14 7 6.8561 1.6734 2.0280 15 6 7.0476 1.0615 3.3453 16 6 8.4598 0.4801 3.4370 17 1 8.7531 -0.0632 2.5389 18 6 9.5127 1.4925 3.9183 19 6 10.1211 0.3477 4.7453 20 1 10.4569 0.6536 5.7361 21 7 11.1276 -0.4305 4.0188 22 6 12.4531 -0.3029 4.3379 23 1 12.7567 0.3716 5.1247 24 6 13.4068 -1.0399 3.6491 25 7 13.0369 -1.8616 2.6898 26 14 15.2151 -0.8654 4.0838 27 1 16.0225 -1.7525 3.2084 28 1 15.6383 0.5440 3.8847 29 1 15.4221 -1.2485 5.5036 30 6 8.7237 -0.2943 4.7392 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9563 -0.8900 38 1 3.9330 0.9287 -0.8908 39 1 3.9337 0.9285 0.8891 40 1 4.3926 2.9355 -2.0741 41 1 2.7682 3.4358 -1.5444 42 1 4.1860 5.3838 -2.2243 43 1 3.7027 5.4667 -0.5123 44 1 5.3867 4.8727 1.1883 45 1 7.0043 4.3880 0.6232 46 1 7.5764 1.6617 1.3784 47 1 6.3167 0.2653 3.4857 48 1 6.9151 1.8171 4.1195 49 1 9.0988 2.2976 4.5254 50 1 10.1667 1.8531 3.1242 51 1 10.8550 -1.0361 3.3119 52 1 13.7033 -2.3763 2.2083 53 1 8.7408 -1.3762 4.6079 54 1 8.0942 0.0224 5.5708 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086438293.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:33 Heat of formation + Delta-G solvation = -75.724969 kcal Electronic energy + Delta-G solvation = -30128.169839 eV Core-core repulsion = 26099.642561 eV Total energy + Delta-G solvation = -4028.527278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.66143 -40.31447 -39.45710 -37.58199 -36.00138 -35.23575 -34.96467 -32.75999 -31.95017 -30.64889 -28.83064 -27.39683 -26.43446 -26.02238 -25.36932 -23.67373 -23.21010 -22.25639 -21.81774 -21.09709 -19.82873 -19.33479 -18.42244 -17.72565 -17.50681 -16.94156 -16.66402 -16.54913 -16.29273 -16.03106 -15.82762 -15.54117 -15.51889 -15.19329 -15.13302 -14.67111 -14.58730 -14.43564 -13.98551 -13.88205 -13.65589 -13.36804 -13.27622 -12.99624 -12.91762 -12.89695 -12.62174 -12.51050 -12.23454 -12.20312 -12.07677 -12.01878 -11.91587 -11.67490 -11.53117 -11.47385 -11.37306 -11.08701 -10.91842 -10.81691 -10.57832 -10.09436 -9.47498 -8.99809 -7.95365 -5.23448 1.47336 1.48130 1.50413 1.56483 1.97607 2.55896 2.59216 2.89131 3.37143 3.59727 3.66167 3.73227 3.78850 3.84064 3.87826 3.91043 3.95884 4.07770 4.15336 4.21092 4.24910 4.27743 4.32876 4.37950 4.40548 4.51111 4.61823 4.63284 4.68940 4.72753 4.75840 4.78004 4.88637 4.93312 4.94108 4.96824 4.99573 5.04988 5.11390 5.23052 5.27131 5.35172 5.35803 5.43062 5.47701 5.54564 5.66433 5.74754 5.89766 6.02400 6.28259 6.49072 7.16187 7.33374 8.10755 8.32887 9.27635 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.002089 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.580864 B =13398.735791 C =14329.454774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.101 4.101 4 C 0.055 3.945 5 N -0.528 5.528 6 C 0.019 3.981 7 C 0.057 3.943 8 O -0.390 6.390 9 C 0.081 3.919 10 C 0.035 3.965 11 H 0.078 0.922 12 C 0.520 3.480 13 O -0.556 6.556 14 N -0.717 5.717 15 C 0.143 3.857 16 C -0.102 4.102 17 H 0.081 0.919 18 C -0.152 4.152 19 C 0.143 3.857 20 H 0.059 0.941 21 N -0.719 5.719 22 C -0.243 4.243 23 H 0.076 0.924 24 C -0.075 4.075 25 N -0.969 5.969 26 Si 0.972 3.028 27 H -0.297 1.297 28 H -0.278 1.278 29 H -0.279 1.279 30 C -0.135 4.135 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.125 0.875 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.116 0.884 46 H 0.411 0.589 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.049 0.951 51 H 0.374 0.626 52 H 0.251 0.749 53 H 0.056 0.944 54 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.110 10.921 -9.053 27.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.139 4.139 4 C -0.073 4.073 5 N -0.254 5.254 6 C -0.108 4.108 7 C -0.020 4.020 8 O -0.309 6.309 9 C 0.003 3.997 10 C -0.077 4.077 11 H 0.096 0.904 12 C 0.305 3.695 13 O -0.434 6.434 14 N -0.369 5.369 15 C 0.019 3.981 16 C -0.120 4.120 17 H 0.099 0.901 18 C -0.193 4.193 19 C 0.033 3.967 20 H 0.077 0.923 21 N -0.358 5.358 22 C -0.375 4.375 23 H 0.094 0.906 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.801 3.199 27 H -0.223 1.223 28 H -0.204 1.204 29 H -0.205 1.205 30 C -0.174 4.174 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.127 0.873 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.134 0.866 46 H 0.247 0.753 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.110 0.890 50 H 0.067 0.933 51 H 0.206 0.794 52 H 0.060 0.940 53 H 0.075 0.925 54 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.693 11.322 -8.125 28.354 hybrid contribution 1.722 -1.151 -0.743 2.200 sum -22.971 10.171 -8.868 26.641 Atomic orbital electron populations 1.21730 0.94766 1.02027 1.02053 1.21481 0.96805 0.96132 1.01746 1.21458 0.92947 0.97108 1.02406 1.22200 0.97176 0.87675 1.00225 1.61995 1.14166 1.18757 1.30450 1.22964 1.03521 0.95737 0.88628 1.22930 0.81552 0.95130 1.02381 1.88015 1.27436 1.78664 1.36758 1.22522 1.02244 0.88499 0.86437 1.22286 0.91771 0.99338 0.94289 0.90426 1.20442 0.82017 0.77992 0.89027 1.90698 1.42467 1.58988 1.51250 1.46084 1.15351 1.57733 1.17752 1.21292 0.95789 0.96849 0.84151 1.22484 0.93016 0.98061 0.98474 0.90094 1.23706 0.97614 0.97487 1.00447 1.21390 0.88380 0.92429 0.94502 0.92261 1.42289 1.02276 1.49467 1.41734 1.19633 0.84468 1.19161 1.14198 0.90580 1.25546 1.02196 0.99816 0.99209 1.69798 1.33847 1.31417 1.26862 0.85228 0.80131 0.77260 0.77241 1.22304 1.20418 1.20476 1.23351 0.97229 0.99335 0.97501 0.92253 0.93029 0.91940 0.91572 0.93147 0.92558 0.90735 0.94105 0.92552 0.93460 0.87349 0.85747 0.92103 0.92376 0.86638 0.75347 0.92023 0.91262 0.88966 0.93253 0.79375 0.94038 0.92471 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.12 -1.84 5.93 30.59 0.18 -1.66 16 3 C -0.10 -1.65 5.26 30.59 0.16 -1.49 16 4 C 0.05 1.05 4.64 86.30 0.40 1.45 16 5 N -0.53 -10.20 4.23 -874.42 -3.70 -13.90 16 6 C 0.02 0.26 5.46 86.31 0.47 0.73 16 7 C 0.06 0.77 7.01 72.01 0.50 1.28 16 8 O -0.39 -7.37 10.82 -148.98 -1.61 -8.98 16 9 C 0.08 1.51 6.28 72.01 0.45 1.96 16 10 C 0.04 0.70 2.37 44.18 0.10 0.81 16 11 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 12 C 0.52 12.59 5.73 87.66 0.50 13.09 16 13 O -0.56 -17.54 15.61 -3.04 -0.05 -17.59 16 14 N -0.72 -15.75 5.56 -463.07 -2.57 -18.32 16 15 C 0.14 3.43 5.51 86.38 0.48 3.90 16 16 C -0.10 -2.78 3.63 -10.26 -0.04 -2.82 16 17 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 18 C -0.15 -4.66 7.43 31.12 0.23 -4.43 16 19 C 0.14 5.34 4.56 45.52 0.21 5.54 16 20 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 21 N -0.72 -35.08 5.31 -320.44 -1.70 -36.78 16 22 C -0.24 -13.21 9.97 84.03 0.84 -12.37 16 23 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 25 N -0.97 -58.24 13.06 21.65 0.28 -57.96 16 26 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 27 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 29 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 30 C -0.13 -4.01 7.39 31.12 0.23 -3.78 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 0.97 6.72 -2.39 -0.02 0.96 16 38 H 0.04 0.71 8.05 -2.39 -0.02 0.69 16 39 H 0.06 1.38 5.98 -2.39 -0.01 1.36 16 40 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.11 1.15 6.62 -2.39 -0.02 1.13 16 42 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.41 7.76 8.47 -92.71 -0.79 6.97 16 47 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.07 1.69 7.84 -2.39 -0.02 1.67 16 49 H 0.09 2.41 7.89 -2.39 -0.02 2.39 16 50 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.37 19.54 7.90 -92.71 -0.73 18.81 16 52 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 53 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 54 H 0.10 2.57 8.10 -2.39 -0.02 2.55 16 Total: -1.00 -67.86 424.14 -2.06 -69.93 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: -0.64 Total: 38.80 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 5.90 Total: -2.70 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -7.69 Total: -126.97 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -1.66 Total: -26.57 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -67.86 -2.06 -69.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086438293.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.797 kcal (2) G-P(sol) polarization free energy of solvation -67.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds