Wall clock time and date at job start Tue Mar 31 2020 23:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47412 * 2 1 4 4 C 1.53000 * 109.46943 * 180.02562 * 3 2 1 5 5 N 1.46908 * 109.46866 * 179.97438 * 4 3 2 6 6 C 1.47003 * 110.99860 * 288.17054 * 5 4 3 7 7 C 1.53103 * 109.25627 * 177.60837 * 6 5 4 8 8 O 1.43010 * 109.25841 * 56.85050 * 7 6 5 9 9 C 1.43022 * 113.77629 * 301.35178 * 8 7 6 10 10 C 1.47014 * 110.99649 * 164.53618 * 5 4 3 11 11 H 1.08996 * 109.51056 * 62.41454 * 10 5 4 12 12 C 1.50704 * 109.50840 * 302.32816 * 10 5 4 13 13 O 1.21273 * 119.99900 * 331.69064 * 12 10 5 14 14 N 1.34772 * 119.99968 * 151.97028 * 12 10 5 15 15 C 1.46496 * 120.00123 * 179.72369 * 14 12 10 16 16 H 1.09008 * 110.63937 * 323.31079 * 15 14 12 17 17 C 1.55153 * 110.72271 * 86.45143 * 15 14 12 18 18 C 1.54908 * 101.58273 * 153.86419 * 17 15 14 19 19 N 1.47418 * 104.83622 * 322.99668 * 18 17 15 20 20 C 1.36943 * 125.65110 * 204.09231 * 19 18 17 21 21 H 1.07997 * 120.00268 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99810 * 0.02562 * 20 19 18 23 23 N 1.31618 * 119.99741 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00147 * 180.02562 * 22 20 19 25 25 H 1.48512 * 109.46905 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47380 * 119.99475 * 24 22 20 27 27 H 1.48502 * 109.47340 * 240.00140 * 24 22 20 28 28 C 1.47027 * 108.70338 * 24.12426 * 19 18 17 29 29 H 1.08998 * 109.88288 * 239.52596 * 28 19 18 30 30 C 1.52995 * 109.88167 * 118.35861 * 28 19 18 31 31 H 1.08994 * 109.47793 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46671 * 300.00000 * 1 2 3 33 33 H 1.09000 * 109.47399 * 59.99786 * 1 2 3 34 34 H 1.09004 * 109.47115 * 239.99379 * 2 1 3 35 35 H 1.09009 * 109.47133 * 120.00114 * 2 1 3 36 36 H 1.08994 * 109.47130 * 59.99980 * 3 2 1 37 37 H 1.08995 * 109.47077 * 299.99984 * 3 2 1 38 38 H 1.08994 * 109.47329 * 59.99974 * 4 3 2 39 39 H 1.09000 * 109.47529 * 300.00006 * 4 3 2 40 40 H 1.08999 * 109.51205 * 297.53980 * 6 5 4 41 41 H 1.09001 * 109.50714 * 57.63072 * 6 5 4 42 42 H 1.08999 * 109.50781 * 176.78314 * 7 6 5 43 43 H 1.08999 * 109.50381 * 296.91574 * 7 6 5 44 44 H 1.08995 * 109.47511 * 298.69429 * 9 8 7 45 45 H 1.08999 * 109.55019 * 178.55530 * 9 8 7 46 46 H 0.97001 * 120.00175 * 359.72570 * 14 12 10 47 47 H 1.08994 * 111.00805 * 271.94435 * 17 15 14 48 48 H 1.09004 * 111.00144 * 35.79661 * 17 15 14 49 49 H 1.08997 * 110.36550 * 81.83552 * 18 17 15 50 50 H 1.09003 * 110.37004 * 204.04407 * 18 17 15 51 51 H 0.97006 * 119.99397 * 179.97438 * 23 22 20 52 52 H 1.08998 * 109.47362 * 302.19513 * 30 28 19 53 53 H 1.09009 * 109.46991 * 62.19506 * 30 28 19 54 54 H 1.09003 * 109.47440 * 182.19218 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0598 2.8274 -0.0013 6 6 3.8313 3.4663 -1.3053 7 6 4.3006 4.9223 -1.2434 8 8 5.6770 4.9582 -0.8566 9 6 5.9364 4.3447 0.4091 10 6 5.4827 2.8831 0.3641 11 1 6.0704 2.3422 -0.3776 12 6 5.6795 2.2532 1.7189 13 8 4.7791 2.2682 2.5312 14 7 6.8580 1.6781 2.0299 15 6 7.0514 1.0711 3.3491 16 1 6.5416 1.6520 4.1178 17 6 6.5572 -0.3997 3.3544 18 6 7.4237 -1.0148 4.4816 19 7 8.7379 -0.3607 4.3471 20 6 9.9320 -0.8720 4.7806 21 1 10.8440 -0.3123 4.6345 22 6 9.9703 -2.1098 5.4077 23 7 8.8587 -2.7917 5.5861 24 14 11.5990 -2.8071 5.9996 25 1 12.6910 -1.8521 5.6816 26 1 11.5410 -3.0224 7.4677 27 1 11.8600 -4.1011 5.3193 28 6 8.5542 0.9320 3.6712 29 1 9.1346 0.9539 2.7489 30 6 8.9959 2.0693 4.5944 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9563 -0.8899 38 1 3.9329 0.9287 -0.8908 39 1 3.9338 0.9284 0.8891 40 1 4.3927 2.9355 -2.0742 41 1 2.7683 3.4358 -1.5444 42 1 4.1861 5.3837 -2.2242 43 1 3.7028 5.4666 -0.5123 44 1 5.3868 4.8726 1.1883 45 1 7.0043 4.3877 0.6232 46 1 7.5782 1.6661 1.3803 47 1 5.4972 -0.4548 3.6021 48 1 6.7592 -0.8831 2.3985 49 1 6.9888 -0.7955 5.4568 50 1 7.5181 -2.0918 4.3427 51 1 8.8856 -3.6569 6.0240 52 1 8.4241 2.0277 5.5215 53 1 10.0577 1.9646 4.8175 54 1 8.8207 3.0259 4.1021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088769132.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:04 Heat of formation + Delta-G solvation = -75.809767 kcal Electronic energy + Delta-G solvation = -31383.722941 eV Core-core repulsion = 27355.191986 eV Total energy + Delta-G solvation = -4028.530955 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.68773 -40.19066 -38.96634 -37.52880 -35.60347 -35.21648 -33.93024 -32.53362 -32.03317 -30.68727 -30.31272 -27.53717 -26.76923 -25.91950 -25.33371 -23.65451 -22.64345 -21.94870 -21.72354 -21.57642 -20.79387 -18.75684 -18.39930 -17.77525 -17.47401 -17.04503 -16.65303 -16.52685 -16.08579 -15.94119 -15.74994 -15.38219 -15.30223 -15.17813 -15.07542 -14.47098 -14.35180 -14.05143 -13.96648 -13.82832 -13.66572 -13.33844 -13.23626 -12.96825 -12.93369 -12.75667 -12.63396 -12.47661 -12.24234 -12.21861 -12.10432 -11.98485 -11.93783 -11.90013 -11.64066 -11.58014 -11.46744 -11.35252 -10.98870 -10.75004 -10.58335 -10.04322 -9.43789 -8.90474 -7.75334 -5.20299 1.48245 1.48804 1.51053 1.58813 1.93385 2.51070 2.61636 2.91511 3.35619 3.51546 3.68590 3.73001 3.83953 3.89016 3.91247 3.95940 3.96838 4.09850 4.19283 4.22680 4.28321 4.30090 4.40003 4.48658 4.54354 4.61424 4.64892 4.66873 4.67143 4.70753 4.80076 4.80744 4.91156 4.93969 4.96050 4.98716 5.03671 5.06250 5.12587 5.24256 5.36123 5.37452 5.43928 5.49742 5.58811 5.60884 5.77904 5.79273 5.93413 6.05237 6.29764 6.54554 7.10826 7.22050 7.78550 8.41942 9.26852 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013539 B = 0.002797 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.589582 B =10006.669022 C =11618.013014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.101 4.101 4 C 0.055 3.945 5 N -0.530 5.530 6 C 0.019 3.981 7 C 0.057 3.943 8 O -0.388 6.388 9 C 0.081 3.919 10 C 0.039 3.961 11 H 0.083 0.917 12 C 0.522 3.478 13 O -0.556 6.556 14 N -0.704 5.704 15 C 0.156 3.844 16 H 0.078 0.922 17 C -0.136 4.136 18 C 0.159 3.841 19 N -0.614 5.614 20 C -0.224 4.224 21 H 0.086 0.914 22 C -0.070 4.070 23 N -0.951 5.951 24 Si 0.978 3.022 25 H -0.264 1.264 26 H -0.297 1.297 27 H -0.293 1.293 28 C 0.152 3.848 29 H 0.054 0.946 30 C -0.147 4.147 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.121 0.879 46 H 0.413 0.587 47 H 0.062 0.938 48 H 0.067 0.933 49 H -0.016 1.016 50 H 0.076 0.924 51 H 0.245 0.755 52 H 0.034 0.966 53 H 0.047 0.953 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 13.858 -18.243 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.139 4.139 4 C -0.072 4.072 5 N -0.256 5.256 6 C -0.108 4.108 7 C -0.019 4.019 8 O -0.306 6.306 9 C 0.004 3.996 10 C -0.073 4.073 11 H 0.100 0.900 12 C 0.307 3.693 13 O -0.432 6.432 14 N -0.357 5.357 15 C 0.050 3.950 16 H 0.097 0.903 17 C -0.176 4.176 18 C 0.033 3.967 19 N -0.339 5.339 20 C -0.353 4.353 21 H 0.104 0.896 22 C -0.262 4.262 23 N -0.601 5.601 24 Si 0.807 3.193 25 H -0.188 1.188 26 H -0.224 1.224 27 H -0.220 1.220 28 C 0.045 3.955 29 H 0.071 0.929 30 C -0.206 4.206 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.139 0.861 46 H 0.250 0.750 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.001 0.999 50 H 0.094 0.906 51 H 0.055 0.945 52 H 0.053 0.947 53 H 0.066 0.934 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.151 14.070 -17.332 25.417 hybrid contribution 1.247 -1.539 0.393 2.019 sum -10.904 12.532 -16.939 23.725 Atomic orbital electron populations 1.21727 0.94715 1.01999 1.02076 1.21487 0.96864 0.96264 1.01652 1.21449 0.93053 0.96970 1.02382 1.22183 0.97113 0.87762 1.00183 1.61978 1.14308 1.18679 1.30613 1.22969 1.03513 0.95789 0.88531 1.22922 0.81621 0.95018 1.02377 1.88005 1.27302 1.78607 1.36679 1.22536 1.02472 0.88218 0.86412 1.22274 0.91775 0.99464 0.93775 0.89953 1.20555 0.81831 0.77652 0.89230 1.90709 1.42350 1.58886 1.51304 1.45931 1.15636 1.57831 1.16261 1.21688 0.95558 0.92949 0.84801 0.90348 1.23161 0.98917 0.95765 0.99772 1.21637 0.83580 0.99101 0.92362 1.44736 1.03533 1.17172 1.68484 1.19432 0.85742 1.00137 1.30005 0.89583 1.25609 1.00330 0.98164 1.02088 1.70056 1.26403 1.14399 1.49291 0.85011 0.79403 0.78010 0.76923 1.18826 1.22447 1.22046 1.21195 0.92656 0.86347 0.95314 0.92863 1.22129 1.00914 0.98138 0.99426 0.92332 0.93177 0.91665 0.91408 0.93575 0.92784 0.90452 0.93909 0.92912 0.93238 0.87495 0.85598 0.92281 0.92593 0.86101 0.75033 0.91973 0.91417 0.99852 0.90570 0.94503 0.94684 0.93354 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.52 16 2 C -0.12 -2.24 5.93 30.59 0.18 -2.06 16 3 C -0.10 -1.90 5.26 30.59 0.16 -1.74 16 4 C 0.06 1.20 4.64 86.30 0.40 1.60 16 5 N -0.53 -11.07 4.23 -874.38 -3.70 -14.77 16 6 C 0.02 0.28 5.46 86.32 0.47 0.75 16 7 C 0.06 0.79 7.01 72.02 0.50 1.29 16 8 O -0.39 -7.11 10.82 -148.98 -1.61 -8.72 16 9 C 0.08 1.52 6.28 72.02 0.45 1.98 16 10 C 0.04 0.82 2.37 44.18 0.10 0.93 16 11 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 12 C 0.52 14.33 5.73 87.66 0.50 14.83 16 13 O -0.56 -20.02 15.33 -3.01 -0.05 -20.06 16 14 N -0.70 -18.58 5.20 -436.93 -2.27 -20.86 16 15 C 0.16 5.41 2.76 46.18 0.13 5.53 16 16 H 0.08 2.99 7.41 -2.38 -0.02 2.98 16 17 C -0.14 -5.40 6.77 31.98 0.22 -5.18 16 18 C 0.16 7.95 5.89 86.86 0.51 8.46 16 19 N -0.61 -30.37 3.13 -668.28 -2.09 -32.46 16 20 C -0.22 -12.07 9.89 84.03 0.83 -11.24 16 21 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 22 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 23 N -0.95 -56.54 10.09 21.65 0.22 -56.32 16 24 Si 0.98 45.11 29.55 68.60 2.03 47.14 16 25 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 26 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 28 C 0.15 5.75 3.48 45.34 0.16 5.90 16 29 H 0.05 1.87 7.69 -2.39 -0.02 1.85 16 30 C -0.15 -5.10 9.14 71.98 0.66 -4.44 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.15 6.72 -2.39 -0.02 1.13 16 38 H 0.04 0.83 8.05 -2.39 -0.02 0.81 16 39 H 0.05 1.49 5.98 -2.39 -0.01 1.48 16 40 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.11 1.23 6.62 -2.39 -0.02 1.21 16 42 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.41 8.52 8.31 -92.71 -0.77 7.74 16 47 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 48 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 49 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 50 H 0.08 4.33 5.88 -2.39 -0.01 4.32 16 51 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 52 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 53 H 0.05 1.73 8.04 -2.38 -0.02 1.71 16 54 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -69.08 414.92 -0.93 -70.01 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.09 Total: 24.38 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 6.46 Total: 11.67 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -7.85 Total: -124.41 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -1.66 Total: -28.79 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -69.08 -0.93 -70.01 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088769132.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.800 kcal (2) G-P(sol) polarization free energy of solvation -69.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds