Wall clock time and date at job start Tue Mar 31 2020 23:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46901 * 180.02562 * 4 3 2 6 6 C 1.47013 * 111.00262 * 46.36226 * 5 4 3 7 7 C 1.53097 * 109.25489 * 182.39156 * 6 5 4 8 8 O 1.43013 * 109.26296 * 303.14981 * 7 6 5 9 9 C 1.43013 * 113.73687 * 58.66903 * 8 7 6 10 10 C 1.47021 * 110.99944 * 169.99790 * 5 4 3 11 11 H 1.09005 * 109.50080 * 297.58431 * 10 5 4 12 12 C 1.50701 * 109.50744 * 57.66864 * 10 5 4 13 13 O 1.21284 * 119.99877 * 359.97438 * 12 10 5 14 14 N 1.34776 * 120.00071 * 180.02562 * 12 10 5 15 15 C 1.46500 * 119.99949 * 180.02562 * 14 12 10 16 16 H 1.08998 * 110.64153 * 328.14005 * 15 14 12 17 17 C 1.55160 * 110.71822 * 91.47638 * 15 14 12 18 18 C 1.54916 * 101.57851 * 153.86508 * 17 15 14 19 19 N 1.47422 * 104.83261 * 322.98916 * 18 17 15 20 20 C 1.36935 * 125.65167 * 204.16568 * 19 18 17 21 21 H 1.07994 * 120.00587 * 179.97438 * 20 19 18 22 22 C 1.38818 * 119.99637 * 359.95938 * 20 19 18 23 23 N 1.31621 * 120.00216 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99966 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47178 * 60.00160 * 24 22 20 26 26 H 1.48504 * 109.47002 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47121 * 299.99968 * 24 22 20 28 28 C 1.47025 * 108.70370 * 24.13069 * 19 18 17 29 29 H 1.09002 * 109.88413 * 239.52602 * 28 19 18 30 30 C 1.52994 * 109.88271 * 118.35926 * 28 19 18 31 31 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 32 32 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 34 34 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 35 35 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 36 36 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 37 37 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 38 38 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 39 39 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 40 40 H 1.08997 * 109.50492 * 302.32381 * 6 5 4 41 41 H 1.09006 * 109.50649 * 62.45687 * 6 5 4 42 42 H 1.09007 * 109.50196 * 183.21235 * 7 6 5 43 43 H 1.09002 * 109.54530 * 63.10909 * 7 6 5 44 44 H 1.09003 * 109.50668 * 181.39613 * 9 8 7 45 45 H 1.09002 * 109.54229 * 61.28815 * 9 8 7 46 46 H 0.96999 * 120.00013 * 0.02562 * 14 12 10 47 47 H 1.09001 * 111.00370 * 271.93934 * 17 15 14 48 48 H 1.08997 * 111.00443 * 35.79499 * 17 15 14 49 49 H 1.08998 * 110.36222 * 204.15278 * 18 17 15 50 50 H 1.08996 * 110.46124 * 81.88178 * 18 17 15 51 51 H 0.96993 * 120.00276 * 179.97438 * 23 22 20 52 52 H 1.09005 * 109.46968 * 302.19203 * 30 28 19 53 53 H 1.08999 * 109.47567 * 62.19255 * 30 28 19 54 54 H 1.09001 * 109.47330 * 182.18962 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.3427 3.6394 0.9940 7 6 3.8413 5.0850 0.9196 8 8 5.2569 5.1068 1.1220 9 6 5.9865 4.3268 0.1710 10 6 5.5097 2.8735 0.2378 11 1 5.7302 2.4623 1.2229 12 6 6.2185 2.0624 -0.8162 13 8 5.5796 1.5005 -1.6805 14 7 7.5623 1.9606 -0.7977 15 6 8.2514 1.1725 -1.8226 16 1 7.6325 0.3347 -2.1437 17 6 8.6433 2.0649 -3.0298 18 6 9.8635 1.2990 -3.5994 19 7 10.5730 0.7845 -2.4140 20 6 11.9027 0.4623 -2.3571 21 1 12.3297 0.0917 -1.4370 22 6 12.7018 0.6119 -3.4823 23 7 12.1815 1.0637 -4.6037 24 14 14.5159 0.1731 -3.4046 25 1 14.6635 -1.2607 -3.0477 26 1 15.1421 0.4203 -4.7283 27 1 15.1840 1.0105 -2.3762 28 6 9.6166 0.6752 -1.3027 29 1 9.9444 1.2962 -0.4691 30 6 9.5031 -0.7835 -0.8555 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3635 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 3.9337 0.9286 0.8892 39 1 3.9330 0.9287 -0.8908 40 1 2.2736 3.6118 0.7837 41 1 3.5285 3.2411 1.9916 42 1 3.3537 5.6783 1.6932 43 1 3.6073 5.5014 -0.0602 44 1 7.0506 4.3718 0.4031 45 1 5.8156 4.7201 -0.8311 46 1 8.0732 2.4091 -0.1058 47 1 7.8354 2.1112 -3.7601 48 1 8.9282 3.0642 -2.7008 49 1 10.5067 1.9753 -4.1625 50 1 9.5346 0.4748 -4.2322 51 1 12.7399 1.1685 -5.3898 52 1 9.1938 -1.3995 -1.7000 53 1 10.4705 -1.1278 -0.4897 54 1 8.7642 -0.8627 -0.0581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088769133.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:08 Heat of formation + Delta-G solvation = -69.520869 kcal Electronic energy + Delta-G solvation = -31259.671714 eV Core-core repulsion = 27231.413466 eV Total energy + Delta-G solvation = -4028.258248 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.71565 -40.18931 -38.98501 -37.59853 -35.61606 -35.12795 -33.98382 -32.52793 -32.02233 -30.64005 -30.23110 -27.57292 -26.68225 -25.89377 -25.38802 -23.65463 -22.76510 -22.01059 -21.56072 -21.45327 -20.84841 -18.72824 -18.45701 -17.66196 -17.36579 -17.04434 -16.69968 -16.57559 -16.07854 -15.94183 -15.73580 -15.59440 -15.37153 -15.12923 -15.00840 -14.54569 -14.31790 -14.02077 -13.92621 -13.66662 -13.63378 -13.29088 -13.24313 -12.94340 -12.91092 -12.71500 -12.62531 -12.55360 -12.25196 -12.23520 -12.16869 -12.04360 -11.90061 -11.83167 -11.61168 -11.57154 -11.43568 -11.35300 -10.93152 -10.71771 -10.46916 -10.02682 -9.36377 -8.89243 -7.73897 -5.18929 1.48650 1.51284 1.52936 1.57451 1.94109 2.52131 2.64039 2.91423 3.36303 3.53513 3.65481 3.74439 3.85301 3.92127 3.92723 3.98722 3.99185 4.08125 4.19280 4.21746 4.26890 4.33930 4.42838 4.50271 4.56415 4.62174 4.65321 4.67308 4.71368 4.76060 4.80113 4.81976 4.91380 4.93727 4.97327 4.99644 5.04804 5.10214 5.19694 5.23658 5.34932 5.39204 5.44854 5.50756 5.60914 5.63341 5.81180 5.81704 5.98842 6.06128 6.31635 6.54150 7.12044 7.22633 7.79948 8.43319 9.27697 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.002505 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.240352 B =11174.307896 C =12128.460174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.111 4.111 4 C 0.045 3.955 5 N -0.530 5.530 6 C 0.015 3.985 7 C 0.056 3.944 8 O -0.389 6.389 9 C 0.078 3.922 10 C 0.039 3.961 11 H 0.088 0.912 12 C 0.522 3.478 13 O -0.555 6.555 14 N -0.702 5.702 15 C 0.155 3.845 16 H 0.079 0.921 17 C -0.137 4.137 18 C 0.157 3.843 19 N -0.613 5.613 20 C -0.227 4.227 21 H 0.085 0.915 22 C -0.069 4.069 23 N -0.951 5.951 24 Si 0.978 3.022 25 H -0.281 1.281 26 H -0.298 1.298 27 H -0.275 1.275 28 C 0.151 3.849 29 H 0.053 0.947 30 C -0.146 4.146 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.026 0.974 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.047 0.953 42 H 0.125 0.875 43 H 0.059 0.941 44 H 0.121 0.879 45 H 0.057 0.943 46 H 0.413 0.587 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.077 0.923 50 H -0.017 1.017 51 H 0.246 0.754 52 H 0.034 0.966 53 H 0.047 0.953 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.405 5.657 15.393 26.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.148 4.148 4 C -0.082 4.082 5 N -0.256 5.256 6 C -0.112 4.112 7 C -0.021 4.021 8 O -0.307 6.307 9 C 0.000 4.000 10 C -0.073 4.073 11 H 0.105 0.895 12 C 0.308 3.692 13 O -0.433 6.433 14 N -0.355 5.355 15 C 0.049 3.951 16 H 0.097 0.903 17 C -0.176 4.176 18 C 0.032 3.968 19 N -0.338 5.338 20 C -0.356 4.356 21 H 0.103 0.897 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.806 3.194 25 H -0.207 1.207 26 H -0.224 1.224 27 H -0.201 1.201 28 C 0.044 3.956 29 H 0.071 0.929 30 C -0.205 4.205 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.065 0.935 42 H 0.143 0.857 43 H 0.077 0.923 44 H 0.139 0.861 45 H 0.075 0.925 46 H 0.250 0.750 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.001 0.999 51 H 0.055 0.945 52 H 0.053 0.947 53 H 0.066 0.934 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.681 5.562 14.349 26.587 hybrid contribution 1.473 -0.940 0.150 1.754 sum -20.208 4.622 14.499 25.297 Atomic orbital electron populations 1.21731 0.94586 1.02032 1.02155 1.21474 0.96838 0.96228 1.01672 1.21673 0.93114 0.97434 1.02605 1.22456 0.96378 0.88091 1.01266 1.62046 1.01212 1.12717 1.49652 1.23022 1.00616 0.94036 0.93537 1.22943 0.80441 0.95517 1.03176 1.88007 1.19406 1.69550 1.53720 1.22607 0.97328 0.86395 0.93643 1.22269 0.90269 0.97915 0.96842 0.89495 1.20585 0.82064 0.80721 0.85841 1.90627 1.65895 1.47844 1.38898 1.45865 1.06287 1.52104 1.31218 1.21691 0.92073 0.93504 0.87786 0.90250 1.23182 0.97870 0.99054 0.97529 1.21664 0.90918 0.95026 0.89218 1.44709 1.04908 1.76269 1.07952 1.19345 0.83849 1.35495 0.96875 0.89723 1.25608 1.02380 1.02543 0.95604 1.70034 1.35135 1.53232 1.01680 0.85158 0.79901 0.78017 0.76289 1.20687 1.22413 1.20071 1.21205 0.88042 0.95432 0.90950 0.92895 1.22120 1.01071 0.97224 1.00129 0.92733 0.92372 0.91923 0.93091 0.92012 0.91809 0.90458 0.95606 0.90053 0.87189 0.93459 0.85714 0.92313 0.86123 0.92502 0.75031 0.91765 0.90898 0.90484 0.99900 0.94463 0.94699 0.93405 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.12 -1.97 5.93 30.59 0.18 -1.79 16 3 C -0.11 -1.84 4.48 30.59 0.14 -1.70 16 4 C 0.05 0.99 4.62 86.30 0.40 1.38 16 5 N -0.53 -11.16 4.51 -874.36 -3.94 -15.11 16 6 C 0.02 0.22 4.94 86.31 0.43 0.65 16 7 C 0.06 0.79 7.01 72.01 0.50 1.30 16 8 O -0.39 -7.30 10.83 -148.98 -1.61 -8.92 16 9 C 0.08 1.47 6.16 72.01 0.44 1.91 16 10 C 0.04 0.82 2.36 44.18 0.10 0.93 16 11 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 12 C 0.52 14.17 6.88 87.66 0.60 14.77 16 13 O -0.55 -19.41 13.35 -3.04 -0.04 -19.45 16 14 N -0.70 -18.30 5.08 -436.91 -2.22 -20.52 16 15 C 0.16 5.34 2.85 46.18 0.13 5.48 16 16 H 0.08 3.02 7.25 -2.39 -0.02 3.01 16 17 C -0.14 -5.30 6.77 31.99 0.22 -5.09 16 18 C 0.16 7.82 5.89 86.86 0.51 8.33 16 19 N -0.61 -30.26 3.13 -668.27 -2.09 -32.35 16 20 C -0.23 -12.21 9.89 84.04 0.83 -11.38 16 21 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 22 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 23 N -0.95 -56.41 10.09 21.65 0.22 -56.19 16 24 Si 0.98 45.08 29.55 68.60 2.03 47.11 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 C 0.15 5.72 3.48 45.34 0.16 5.88 16 29 H 0.05 1.87 7.72 -2.39 -0.02 1.85 16 30 C -0.15 -5.16 9.13 71.98 0.66 -4.50 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.01 6.27 -2.39 -0.02 0.99 16 38 H 0.03 0.55 8.08 -2.39 -0.02 0.53 16 39 H 0.08 2.36 5.49 -2.39 -0.01 2.35 16 40 H 0.11 1.30 6.05 -2.39 -0.01 1.28 16 41 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.13 1.12 8.14 -2.38 -0.02 1.11 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.12 1.82 7.68 -2.39 -0.02 1.81 16 45 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.41 8.38 7.87 -92.71 -0.73 7.65 16 47 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 49 H 0.08 4.35 5.87 -2.39 -0.01 4.33 16 50 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 51 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 52 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 53 H 0.05 1.74 8.04 -2.39 -0.02 1.72 16 54 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -68.16 410.38 -1.04 -69.20 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.14 Total: 24.60 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 6.48 Total: 11.63 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -8.03 Total: -124.17 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -1.65 Total: -28.37 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -68.16 -1.04 -69.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088769133.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.324 kcal (2) G-P(sol) polarization free energy of solvation -68.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds