Wall clock time and date at job start Tue Mar 31 2020 23:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46951 * 2 1 4 4 C 1.52991 * 109.47429 * 239.99956 * 2 1 3 5 5 N 1.46502 * 109.47400 * 60.00025 * 4 2 1 6 6 C 1.36935 * 120.00194 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00042 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00175 * 179.97438 * 6 5 4 9 9 N 1.31623 * 119.99577 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00222 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47308 * 90.00221 * 10 8 6 12 12 H 1.48499 * 109.47446 * 210.00088 * 10 8 6 13 13 H 1.48498 * 109.47395 * 330.00065 * 10 8 6 14 14 C 1.53000 * 109.46745 * 119.99708 * 2 1 3 15 15 C 1.53047 * 109.44896 * 179.97438 * 14 2 1 16 16 C 1.53184 * 109.31513 * 181.38200 * 15 14 2 17 17 N 1.46932 * 108.77291 * 305.36029 * 16 15 14 18 18 C 1.34773 * 120.63124 * 233.58630 * 17 16 15 19 19 O 1.21283 * 119.99958 * 174.59483 * 18 17 16 20 20 C 1.50704 * 119.99916 * 354.59982 * 18 17 16 21 21 C 1.53002 * 109.47094 * 183.60448 * 20 18 17 22 22 C 1.52999 * 109.46958 * 303.60143 * 20 18 17 23 23 C 1.50691 * 109.47122 * 63.60336 * 20 18 17 24 24 N 1.34786 * 119.99843 * 180.02562 * 23 20 18 25 25 O 1.21279 * 120.00451 * 359.97438 * 23 20 18 26 26 C 1.46932 * 118.73713 * 53.61256 * 17 16 15 27 27 C 1.53040 * 109.46099 * 300.02809 * 14 2 1 28 28 H 1.08996 * 109.47376 * 300.00694 * 1 2 3 29 29 H 1.09004 * 109.46987 * 60.00326 * 1 2 3 30 30 H 1.08996 * 109.47494 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47019 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47165 * 299.99390 * 3 2 1 33 33 H 1.09006 * 109.47481 * 60.00020 * 3 2 1 34 34 H 1.08999 * 109.47299 * 179.97438 * 4 2 1 35 35 H 1.09006 * 109.46946 * 299.99985 * 4 2 1 36 36 H 0.96996 * 120.00000 * 359.97438 * 5 4 2 37 37 H 0.97007 * 119.99786 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.46027 * 60.00225 * 14 2 1 39 39 H 1.09007 * 109.49542 * 301.33250 * 15 14 2 40 40 H 1.08997 * 109.49624 * 61.42497 * 15 14 2 41 41 H 1.09002 * 109.58979 * 185.58062 * 16 15 14 42 42 H 1.08996 * 109.58881 * 65.14927 * 16 15 14 43 43 H 1.09004 * 109.47242 * 64.92319 * 21 20 18 44 44 H 1.08993 * 109.47428 * 184.93122 * 21 20 18 45 45 H 1.09001 * 109.46935 * 304.93071 * 21 20 18 46 46 H 1.08998 * 109.47085 * 54.79855 * 22 20 18 47 47 H 1.09002 * 109.47188 * 174.80211 * 22 20 18 48 48 H 1.09003 * 109.47264 * 294.80051 * 22 20 18 49 49 H 0.97001 * 119.99656 * 359.97438 * 24 23 20 50 50 H 0.96999 * 119.99798 * 179.97438 * 24 23 20 51 51 H 1.08996 * 109.58159 * 186.60536 * 26 17 16 52 52 H 1.08992 * 109.70648 * 66.24515 * 26 17 16 53 53 H 1.09002 * 109.49789 * 298.58015 * 27 14 2 54 54 H 1.09000 * 109.49962 * 58.64787 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 1.5518 -0.0306 -2.4454 6 6 1.8822 -0.4988 -3.6891 7 1 2.5032 -1.3769 -3.7881 8 6 1.4191 0.1552 -4.8225 9 7 0.6628 1.2256 -4.7018 10 14 1.8705 -0.4830 -6.5191 11 1 0.8473 -1.4609 -6.9685 12 1 1.9253 0.6511 -7.4762 13 1 3.1977 -1.1466 -6.4614 14 6 2.0399 -0.7212 1.2493 15 6 3.5703 -0.7215 1.2486 16 6 4.0775 -1.4742 2.4826 17 7 3.4748 -0.8763 3.6819 18 6 4.2483 -0.4573 4.7030 19 8 3.7488 0.1228 5.6437 20 6 5.7338 -0.7095 4.6758 21 6 6.3585 -0.2182 5.9832 22 6 5.9937 -2.2090 4.5183 23 6 6.3479 0.0313 3.5161 24 7 7.6747 -0.0479 3.2924 25 8 5.6483 0.6980 2.7834 26 6 2.0129 -0.7444 3.7470 27 6 1.5290 0.0001 2.4986 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7208 -1.2493 35 1 1.6767 -1.7489 -1.2491 36 1 0.9938 0.7578 -2.3565 37 1 0.3389 1.6825 -5.4938 38 1 1.6765 -1.7488 1.2491 39 1 3.9336 -1.2147 0.3469 40 1 3.9343 0.3056 1.2737 41 1 5.1629 -1.3927 2.5399 42 1 3.7908 -2.5235 2.4140 43 1 5.9789 -0.8136 6.8136 44 1 7.4423 -0.3199 5.9287 45 1 6.0992 0.8290 6.1387 46 1 5.4712 -2.5775 3.6355 47 1 7.0639 -2.3825 4.4059 48 1 5.6310 -2.7353 5.4013 49 1 8.2343 -0.5815 3.8782 50 1 8.0700 0.4286 2.5457 51 1 1.7362 -0.1815 4.6384 52 1 1.5559 -1.7333 3.7828 53 1 1.9124 1.0204 2.5120 54 1 0.4393 0.0210 2.4866 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101549044.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:07 Heat of formation + Delta-G solvation = -92.253027 kcal Electronic energy + Delta-G solvation = -32342.192445 eV Core-core repulsion = 28312.948457 eV Total energy + Delta-G solvation = -4029.243988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.35302 -40.50289 -39.57630 -37.44878 -36.00653 -35.51175 -34.18422 -32.96697 -32.10349 -31.41536 -28.37312 -28.14491 -27.48523 -26.78168 -25.38591 -24.46602 -23.72919 -22.87538 -21.28145 -20.06359 -19.59487 -19.20727 -18.59823 -17.78032 -17.41147 -16.69428 -16.60887 -16.26367 -16.20000 -15.85511 -15.46949 -15.34587 -15.25539 -14.99883 -14.94170 -14.59570 -14.23082 -14.09180 -13.74793 -13.63768 -13.44548 -13.24938 -13.14881 -13.11202 -13.06915 -12.90189 -12.79701 -12.73943 -12.60874 -12.25625 -12.16430 -12.10285 -11.93562 -11.85291 -11.69755 -11.24277 -11.16268 -10.94411 -10.92024 -10.83384 -10.68854 -10.62814 -9.59762 -8.92940 -7.92336 -5.19528 1.40906 1.46456 1.48722 1.53214 1.57006 2.00208 2.56678 2.57662 3.23423 3.40894 3.68563 3.73690 3.77374 3.81071 3.83050 3.97855 4.11278 4.20832 4.27243 4.28172 4.38208 4.39993 4.47723 4.59312 4.64174 4.68472 4.75553 4.76050 4.79137 4.83824 4.87144 4.92354 4.96149 4.99581 5.04219 5.09181 5.16615 5.18537 5.22629 5.22740 5.24788 5.38021 5.43093 5.49915 5.56642 5.65212 5.69301 5.89435 6.30414 6.35713 6.41738 7.09101 7.28901 7.36483 8.16000 8.38971 9.31706 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.002822 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.019858 B = 9919.226221 C =10789.708508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 C -0.127 4.127 4 C 0.164 3.836 5 N -0.741 5.741 6 C -0.241 4.241 7 H 0.074 0.926 8 C -0.079 4.079 9 N -0.972 5.972 10 Si 0.973 3.027 11 H -0.287 1.287 12 H -0.297 1.297 13 H -0.269 1.269 14 C -0.061 4.061 15 C -0.129 4.129 16 C 0.113 3.887 17 N -0.593 5.593 18 C 0.530 3.470 19 O -0.582 6.582 20 C -0.102 4.102 21 C -0.124 4.124 22 C -0.154 4.154 23 C 0.523 3.477 24 N -0.827 5.827 25 O -0.567 6.567 26 C 0.112 3.888 27 C -0.123 4.123 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.375 0.625 37 H 0.250 0.750 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.043 0.957 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.084 0.916 49 H 0.419 0.581 50 H 0.411 0.589 51 H 0.076 0.924 52 H 0.091 0.909 53 H 0.049 0.951 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.077 -9.987 24.546 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.055 4.055 3 C -0.184 4.184 4 C 0.037 3.963 5 N -0.384 5.384 6 C -0.373 4.373 7 H 0.092 0.908 8 C -0.271 4.271 9 N -0.623 5.623 10 Si 0.802 3.198 11 H -0.214 1.214 12 H -0.224 1.224 13 H -0.194 1.194 14 C -0.080 4.080 15 C -0.167 4.167 16 C -0.009 4.009 17 N -0.323 5.323 18 C 0.318 3.682 19 O -0.462 6.462 20 C -0.109 4.109 21 C -0.181 4.181 22 C -0.211 4.211 23 C 0.307 3.693 24 N -0.392 5.392 25 O -0.445 6.445 26 C -0.010 4.010 27 C -0.161 4.161 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.208 0.792 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.121 0.879 45 H 0.062 0.938 46 H 0.095 0.905 47 H 0.124 0.876 48 H 0.103 0.897 49 H 0.251 0.749 50 H 0.244 0.756 51 H 0.095 0.905 52 H 0.109 0.891 53 H 0.068 0.932 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.327 -9.448 24.560 29.962 hybrid contribution 0.087 0.648 -1.458 1.599 sum 14.415 -8.800 23.101 28.616 Atomic orbital electron populations 1.21783 0.94420 1.01695 1.00951 1.20588 0.95728 0.95028 0.94203 1.21760 1.00204 0.96210 1.00227 1.20866 0.95698 0.94062 0.85637 1.42652 1.61204 1.33384 1.01200 1.19661 1.24409 1.08158 0.85035 0.90771 1.25557 1.01386 0.98591 1.01551 1.69835 1.41240 1.22441 1.28802 0.85135 0.78090 0.76745 0.79784 1.21388 1.22394 1.19379 1.21004 0.95001 0.99444 0.92530 1.22003 0.95497 1.01699 0.97485 1.22084 0.98781 0.96843 0.83143 1.47994 1.07124 1.60061 1.17146 1.20424 0.89101 0.77057 0.81583 1.90648 1.75790 1.42999 1.36765 1.21143 0.91683 1.00687 0.97375 1.21701 1.01774 1.01398 0.93251 1.22284 1.05540 0.88444 1.04808 1.20245 0.83684 0.80675 0.84745 1.43614 1.07136 1.53476 1.35014 1.90882 1.62070 1.42446 1.49150 1.21671 0.79189 1.01581 0.98593 1.21980 1.01612 0.98971 0.93501 0.91127 0.95033 0.92383 0.93682 0.95064 0.92226 0.96393 0.96395 0.79199 0.94160 0.89850 0.91130 0.92065 0.89028 0.89294 0.90348 0.87918 0.93793 0.90520 0.87590 0.89740 0.74878 0.75646 0.90538 0.89119 0.93242 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 7.95 71.98 0.57 -3.75 16 2 C -0.06 -1.85 0.33 -52.18 -0.02 -1.86 16 3 C -0.13 -4.64 7.60 71.98 0.55 -4.09 16 4 C 0.16 6.75 4.80 86.38 0.41 7.16 16 5 N -0.74 -38.91 5.00 -343.46 -1.72 -40.63 16 6 C -0.24 -13.82 9.99 84.03 0.84 -12.98 16 7 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 8 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 9 N -0.97 -61.28 13.06 21.65 0.28 -61.00 16 10 Si 0.97 47.20 29.55 68.60 2.03 49.23 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 C -0.06 -1.60 1.51 -10.76 -0.02 -1.61 16 15 C -0.13 -3.41 4.45 30.67 0.14 -3.27 16 16 C 0.11 2.29 3.64 86.36 0.31 2.60 16 17 N -0.59 -13.63 2.84 -818.90 -2.33 -15.96 16 18 C 0.53 13.19 5.93 87.66 0.52 13.71 16 19 O -0.58 -18.61 15.31 -3.04 -0.05 -18.66 16 20 C -0.10 -1.60 0.60 -53.67 -0.03 -1.64 16 21 C -0.12 -1.56 7.80 71.98 0.56 -1.00 16 22 C -0.15 -1.22 8.09 71.98 0.58 -0.64 16 23 C 0.52 9.29 5.06 87.65 0.44 9.73 16 24 N -0.83 -6.69 8.60 -173.53 -1.49 -8.18 16 25 O -0.57 -16.01 13.53 -3.03 -0.04 -16.06 16 26 C 0.11 2.51 6.44 86.36 0.56 3.07 16 27 C -0.12 -3.00 4.65 30.67 0.14 -2.86 16 28 H 0.07 1.95 6.40 -2.39 -0.02 1.94 16 29 H 0.03 1.24 6.86 -2.38 -0.02 1.23 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 1.70 6.46 -2.39 -0.02 1.68 16 32 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 33 H 0.06 1.97 6.46 -2.38 -0.02 1.95 16 34 H 0.02 0.76 6.40 -2.39 -0.02 0.75 16 35 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.37 21.03 5.36 -92.71 -0.50 20.53 16 37 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 39 H 0.07 1.94 6.36 -2.38 -0.02 1.92 16 40 H 0.06 1.99 5.11 -2.39 -0.01 1.98 16 41 H 0.09 1.68 3.23 -2.39 -0.01 1.67 16 42 H 0.09 1.37 7.98 -2.39 -0.02 1.35 16 43 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.10 0.47 7.43 -2.39 -0.02 0.45 16 45 H 0.04 0.81 7.90 -2.39 -0.02 0.79 16 46 H 0.08 0.71 4.73 -2.39 -0.01 0.69 16 47 H 0.11 0.13 7.42 -2.39 -0.02 0.12 16 48 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.42 0.19 7.55 -92.71 -0.70 -0.51 16 50 H 0.41 3.18 8.93 -92.71 -0.83 2.35 16 51 H 0.08 1.94 7.00 -2.39 -0.02 1.92 16 52 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 53 H 0.05 1.45 6.51 -2.39 -0.02 1.43 16 54 H 0.09 1.95 6.36 -2.39 -0.02 1.94 16 Total: -1.00 -81.30 389.84 1.64 -79.66 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -1.07 Total: 33.22 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 6.03 Total: -1.62 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -5.26 Total: -125.77 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.09 Total: -34.72 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -81.30 1.64 -79.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101549044.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.591 kcal (2) G-P(sol) polarization free energy of solvation -81.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds