Wall clock time and date at job start Tue Mar 31 2020 23:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99764 * 2 1 4 4 C 1.34778 * 119.99979 * 179.97438 * 2 1 3 5 5 O 1.21281 * 120.00302 * 0.02562 * 4 2 1 6 6 C 1.50698 * 119.99650 * 180.02562 * 4 2 1 7 7 C 1.50700 * 109.46912 * 180.02562 * 6 4 2 8 8 O 1.21282 * 120.00058 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99997 * 179.97438 * 7 6 4 10 10 C 1.46925 * 120.62980 * 180.02562 * 9 7 6 11 11 C 1.53187 * 108.77688 * 126.41364 * 10 9 7 12 12 C 1.53046 * 109.31043 * 54.63722 * 11 10 9 13 13 C 1.53001 * 109.46008 * 178.63085 * 12 11 10 14 14 C 1.53000 * 109.46981 * 300.02190 * 13 12 11 15 15 C 1.52997 * 109.47440 * 60.02370 * 13 12 11 16 16 C 1.53000 * 109.47072 * 180.02562 * 13 12 11 17 17 N 1.46499 * 109.47170 * 179.97438 * 16 13 12 18 18 C 1.36932 * 120.00350 * 179.97438 * 17 16 13 19 19 H 1.08005 * 119.99868 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00619 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99828 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00512 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47357 * 89.99384 * 22 20 18 24 24 H 1.48494 * 109.47219 * 209.99807 * 22 20 18 25 25 H 1.48503 * 109.46989 * 329.99705 * 22 20 18 26 26 C 1.53043 * 109.53475 * 298.63386 * 12 11 10 27 27 C 1.46921 * 120.63225 * 0.02846 * 9 7 6 28 28 H 1.09005 * 109.46998 * 240.00399 * 1 2 3 29 29 H 1.08995 * 109.47390 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47237 * 120.00770 * 1 2 3 31 31 H 1.09001 * 109.46729 * 269.99705 * 3 2 1 32 32 H 1.08994 * 109.47808 * 29.99555 * 3 2 1 33 33 H 1.08997 * 109.47195 * 150.00107 * 3 2 1 34 34 H 1.08997 * 109.47254 * 60.00283 * 6 4 2 35 35 H 1.08999 * 109.47436 * 300.00209 * 6 4 2 36 36 H 1.09003 * 109.59222 * 6.62634 * 10 9 7 37 37 H 1.09006 * 109.70276 * 246.27263 * 10 9 7 38 38 H 1.08996 * 109.50293 * 294.68191 * 11 10 9 39 39 H 1.09001 * 109.50064 * 174.58451 * 11 10 9 40 40 H 1.09002 * 109.46068 * 58.65418 * 12 11 10 41 41 H 1.09005 * 109.47243 * 60.00407 * 14 13 12 42 42 H 1.09000 * 109.47231 * 180.02562 * 14 13 12 43 43 H 1.09002 * 109.47199 * 300.00391 * 14 13 12 44 44 H 1.08995 * 109.47302 * 60.00023 * 15 13 12 45 45 H 1.09000 * 109.47089 * 180.02562 * 15 13 12 46 46 H 1.09005 * 109.47083 * 300.00337 * 15 13 12 47 47 H 1.09008 * 109.46946 * 299.99481 * 16 13 12 48 48 H 1.08992 * 109.47337 * 59.99460 * 16 13 12 49 49 H 0.97007 * 120.00299 * 359.97438 * 17 16 13 50 50 H 0.96993 * 120.00331 * 180.02562 * 21 20 18 51 51 H 1.09004 * 109.49679 * 181.31796 * 26 12 11 52 52 H 1.08994 * 109.49744 * 301.41312 * 26 12 11 53 53 H 1.09002 * 109.58756 * 353.36576 * 27 9 7 54 54 H 1.09002 * 109.59282 * 113.79441 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2176 0.0005 6 6 3.6459 -1.1671 0.0011 7 6 4.1482 -2.5879 0.0010 8 8 3.3601 -3.5098 0.0000 9 7 5.4733 -2.8342 0.0009 10 6 5.9783 -4.2139 0.0002 11 6 6.9563 -4.3805 -1.1670 12 6 8.0475 -3.3118 -1.0693 13 6 9.0455 -3.4962 -2.2143 14 6 9.6807 -4.8849 -2.1185 15 6 8.3170 -3.3599 -3.5528 16 6 10.1369 -2.4284 -2.1165 17 7 11.0928 -2.6054 -3.2125 18 6 12.1629 -1.7593 -3.3310 19 1 12.3020 -0.9612 -2.6167 20 6 13.0684 -1.9266 -4.3698 21 7 12.8986 -2.8988 -5.2406 22 14 14.5286 -0.7728 -4.5310 23 1 15.6796 -1.3216 -3.7700 24 1 14.8995 -0.6409 -5.9629 25 1 14.1674 0.5615 -3.9884 26 6 7.4132 -1.9224 -1.1651 27 6 6.4403 -1.7280 0.0016 28 1 -0.3633 -0.5138 0.8901 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3634 -0.5139 -0.8899 31 1 2.3791 1.5833 -1.0277 32 1 1.6084 2.0284 0.5137 33 1 3.1498 1.1384 0.5138 34 1 4.0088 -0.6531 0.8911 35 1 4.0096 -0.6535 -0.8888 36 1 5.1460 -4.9077 -0.1187 37 1 6.4924 -4.4176 0.9396 38 1 6.4205 -4.2683 -2.1095 39 1 7.4112 -5.3700 -1.1222 40 1 8.5667 -3.4090 -0.1158 41 1 8.9032 -5.6457 -2.1882 42 1 10.3920 -5.0161 -2.9339 43 1 10.1997 -4.9820 -1.1649 44 1 7.8645 -2.3706 -3.6211 45 1 9.0279 -3.4917 -4.3684 46 1 7.5394 -4.1206 -3.6224 47 1 9.6844 -1.4391 -2.1848 48 1 10.6558 -2.5255 -1.1630 49 1 10.9677 -3.3219 -3.8543 50 1 13.5315 -3.0160 -5.9662 51 1 8.1932 -1.1623 -1.1190 52 1 6.8730 -1.8333 -2.1076 53 1 5.9128 -0.7815 -0.1165 54 1 6.9927 -1.7261 0.9412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101580408.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:15 Heat of formation + Delta-G solvation = -81.557280 kcal Electronic energy + Delta-G solvation = -30865.785769 eV Core-core repulsion = 26837.005583 eV Total energy + Delta-G solvation = -4028.780186 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.67383 -40.65938 -39.49597 -37.31991 -36.42290 -35.45822 -33.35743 -32.44733 -31.83121 -30.98020 -28.61081 -28.15071 -27.46907 -26.88773 -26.08245 -24.59684 -23.65041 -22.32619 -20.76235 -19.72922 -19.40975 -19.02015 -18.49972 -17.28814 -17.20275 -17.01730 -16.62354 -16.28592 -16.22751 -15.89574 -15.41104 -15.21106 -15.11134 -14.88394 -14.62625 -14.34024 -14.26682 -14.07225 -13.93278 -13.74974 -13.48820 -13.45605 -13.21689 -13.06816 -13.04172 -12.89378 -12.79153 -12.73459 -12.71617 -12.58254 -12.22414 -12.08308 -11.93220 -11.84819 -11.68759 -11.21255 -11.19476 -10.90922 -10.86476 -10.76516 -10.46381 -9.64481 -9.54933 -8.89403 -7.90101 -5.16607 1.48869 1.50411 1.58610 1.59532 1.72187 1.78796 2.33167 2.59698 3.38575 3.43656 3.62465 3.73810 3.82707 3.88763 4.16671 4.20962 4.24196 4.30083 4.33274 4.34274 4.41079 4.43861 4.46344 4.46946 4.51718 4.57111 4.68210 4.82801 4.86536 4.87968 4.91387 4.92022 4.97799 5.00634 5.02516 5.04061 5.07963 5.15950 5.20975 5.27875 5.30343 5.39663 5.46651 5.53398 5.55630 5.61399 5.70599 5.73807 6.32972 6.33334 6.48775 7.16511 7.33725 7.39248 8.20216 8.41277 9.33836 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017909 B = 0.002208 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.127289 B =12678.925030 C =13679.861769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.625 5.625 3 C 0.065 3.935 4 C 0.499 3.501 5 O -0.559 6.559 6 C -0.153 4.153 7 C 0.505 3.495 8 O -0.561 6.561 9 N -0.608 5.608 10 C 0.115 3.885 11 C -0.123 4.123 12 C -0.063 4.063 13 C -0.055 4.055 14 C -0.135 4.135 15 C -0.131 4.131 16 C 0.161 3.839 17 N -0.743 5.743 18 C -0.236 4.236 19 H 0.076 0.924 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.971 3.029 23 H -0.290 1.290 24 H -0.299 1.299 25 H -0.267 1.267 26 C -0.135 4.135 27 C 0.107 3.893 28 H 0.046 0.954 29 H 0.110 0.890 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.029 0.971 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.028 0.972 46 H 0.060 0.940 47 H 0.029 0.971 48 H 0.015 0.985 49 H 0.374 0.626 50 H 0.248 0.752 51 H 0.085 0.915 52 H 0.064 0.936 53 H 0.116 0.884 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.175 10.172 14.942 27.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.360 5.360 3 C -0.076 4.076 4 C 0.287 3.713 5 O -0.436 6.436 6 C -0.195 4.195 7 C 0.293 3.707 8 O -0.439 6.439 9 N -0.342 5.342 10 C -0.008 4.008 11 C -0.161 4.161 12 C -0.082 4.082 13 C -0.055 4.055 14 C -0.192 4.192 15 C -0.188 4.188 16 C 0.035 3.965 17 N -0.386 5.386 18 C -0.368 4.368 19 H 0.094 0.906 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.800 3.200 23 H -0.217 1.217 24 H -0.226 1.226 25 H -0.192 1.192 26 C -0.173 4.173 27 C -0.015 4.015 28 H 0.065 0.935 29 H 0.129 0.871 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.179 0.821 35 H 0.171 0.829 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.047 0.953 46 H 0.079 0.921 47 H 0.047 0.953 48 H 0.033 0.967 49 H 0.208 0.792 50 H 0.057 0.943 51 H 0.104 0.896 52 H 0.083 0.917 53 H 0.134 0.866 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.837 9.303 15.008 28.083 hybrid contribution 1.067 -0.167 -0.938 1.430 sum -20.771 9.136 14.070 26.699 Atomic orbital electron populations 1.21675 0.78916 1.03919 1.01019 1.47962 1.07564 1.06869 1.73558 1.22223 0.98298 0.83556 1.03511 1.20677 0.90602 0.83413 0.76629 1.90841 1.70796 1.32668 1.49324 1.21736 0.92519 0.95676 1.09582 1.20652 0.82056 0.91699 0.76285 1.90827 1.55549 1.47514 1.49978 1.48236 1.05062 1.08084 1.72838 1.21534 0.97157 0.83013 0.99088 1.21991 0.96074 0.99924 0.98091 1.21009 0.94288 0.95265 0.97632 1.20591 0.94414 0.94851 0.95666 1.21815 0.99993 0.96414 1.00993 1.21812 0.99222 1.01522 0.96292 1.20928 0.89390 0.96388 0.89830 1.42684 1.27525 1.36617 1.31761 1.19654 1.01285 1.07888 1.07962 0.90581 1.25537 1.02496 1.00866 0.98380 1.69821 1.39245 1.35269 1.18028 0.85171 0.79661 0.78983 0.76163 1.21742 1.22593 1.19190 1.22096 0.99020 0.97171 0.98994 1.22039 0.90512 0.89547 0.99374 0.93512 0.87118 0.93858 0.91217 0.88935 0.88770 0.82141 0.82924 0.91448 0.90140 0.92366 0.90027 0.90238 0.91335 0.95188 0.92812 0.92380 0.95313 0.92078 0.95272 0.96711 0.79244 0.94276 0.89629 0.91731 0.86624 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 10.16 127.77 1.30 2.39 16 2 N -0.62 -8.23 3.27 -871.91 -2.85 -11.08 16 3 C 0.07 0.18 10.21 127.77 1.30 1.49 16 4 C 0.50 10.53 7.67 87.66 0.67 11.20 16 5 O -0.56 -19.10 14.18 20.41 0.29 -18.81 16 6 C -0.15 -2.00 3.08 29.10 0.09 -1.91 16 7 C 0.51 11.66 7.69 87.66 0.67 12.33 16 8 O -0.56 -19.87 13.59 20.41 0.28 -19.59 16 9 N -0.61 -11.13 2.97 -818.99 -2.43 -13.57 16 10 C 0.11 2.33 6.43 86.36 0.56 2.89 16 11 C -0.12 -2.51 4.65 30.67 0.14 -2.37 16 12 C -0.06 -1.32 1.51 -10.76 -0.02 -1.33 16 13 C -0.05 -1.59 0.33 -52.18 -0.02 -1.60 16 14 C -0.13 -4.12 7.95 71.98 0.57 -3.55 16 15 C -0.13 -4.01 7.60 71.98 0.55 -3.46 16 16 C 0.16 5.91 4.80 86.38 0.41 6.32 16 17 N -0.74 -36.51 5.00 -343.46 -1.72 -38.23 16 18 C -0.24 -12.87 9.99 84.03 0.84 -12.03 16 19 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 20 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 21 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 22 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 C -0.13 -2.29 4.65 30.66 0.14 -2.15 16 27 C 0.11 1.22 6.34 86.35 0.55 1.77 16 28 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.11 0.53 7.79 -2.39 -0.02 0.51 16 30 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.09 -0.04 7.92 -2.39 -0.02 -0.06 16 33 H 0.09 -0.11 6.44 -2.39 -0.02 -0.13 16 34 H 0.16 0.73 7.20 -2.39 -0.02 0.71 16 35 H 0.15 1.02 7.66 -2.39 -0.02 1.00 16 36 H 0.07 1.70 7.01 -2.39 -0.02 1.69 16 37 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.06 1.35 6.51 -2.39 -0.02 1.33 16 39 H 0.08 1.62 6.36 -2.39 -0.02 1.60 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.76 6.40 -2.38 -0.02 1.75 16 42 H 0.03 1.12 6.86 -2.39 -0.02 1.11 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.06 1.67 6.46 -2.39 -0.02 1.65 16 45 H 0.03 1.07 6.86 -2.39 -0.02 1.06 16 46 H 0.06 1.65 6.46 -2.38 -0.02 1.64 16 47 H 0.03 1.04 6.40 -2.38 -0.02 1.02 16 48 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.37 19.88 5.36 -92.70 -0.50 19.38 16 50 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 51 H 0.09 1.49 6.36 -2.39 -0.02 1.48 16 52 H 0.06 1.22 6.51 -2.39 -0.02 1.20 16 53 H 0.12 0.53 5.93 -2.39 -0.01 0.52 16 54 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -86.22 403.28 4.50 -81.72 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.40 Total: 25.26 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 8.23 Total: 5.83 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -6.73 Total: -122.16 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: 0.57 Total: -38.40 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -86.22 4.50 -81.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101580408.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.161 kcal (2) G-P(sol) polarization free energy of solvation -86.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds