Wall clock time and date at job start Tue Mar 31 2020 22:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46922 * 2 1 4 4 C 1.53010 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47073 * 54.99868 * 4 3 2 6 6 C 1.53000 * 109.46677 * 294.99758 * 4 3 2 7 7 C 1.50704 * 109.46857 * 174.99741 * 4 3 2 8 8 O 1.21279 * 119.99947 * 0.02562 * 7 4 3 9 9 N 1.34773 * 119.99701 * 179.97438 * 7 4 3 10 10 C 1.46496 * 119.99927 * 180.02562 * 9 7 4 11 11 C 1.53003 * 109.47122 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.64370 * 51.85410 * 11 10 9 13 13 C 1.54930 * 110.88161 * 288.58886 * 11 10 9 14 14 N 1.48528 * 103.23053 * 204.15470 * 13 11 10 15 15 C 1.46904 * 110.99875 * 159.72096 * 14 13 11 16 16 C 1.50692 * 109.47274 * 59.24920 * 15 14 13 17 17 O 1.21296 * 119.99902 * 6.15604 * 16 15 14 18 18 N 1.34780 * 120.00093 * 186.15497 * 16 15 14 19 19 C 1.37102 * 119.99873 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99910 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99846 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00182 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99944 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47303 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47263 * 120.00079 * 23 21 19 26 26 H 1.48497 * 109.46821 * 239.99832 * 23 21 19 27 27 C 1.47904 * 105.82021 * 39.21150 * 14 13 11 28 28 C 1.53995 * 107.05374 * 334.66454 * 27 14 13 29 29 H 1.09001 * 110.30781 * 120.14598 * 28 27 14 30 30 C 1.52995 * 110.31067 * 242.30919 * 28 27 14 31 31 H 1.09001 * 109.47248 * 59.99929 * 1 2 3 32 32 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47463 * 300.00415 * 1 2 3 34 34 H 1.08998 * 109.47491 * 240.00123 * 2 1 3 35 35 H 1.08998 * 109.46938 * 119.99382 * 2 1 3 36 36 H 1.08995 * 109.47768 * 60.00138 * 3 2 1 37 37 H 1.09005 * 109.47185 * 299.99563 * 3 2 1 38 38 H 1.08994 * 109.47345 * 60.00634 * 6 4 3 39 39 H 1.09008 * 109.46716 * 180.02562 * 6 4 3 40 40 H 1.08998 * 109.47053 * 299.99573 * 6 4 3 41 41 H 0.97002 * 120.00118 * 0.02562 * 9 7 4 42 42 H 1.08998 * 109.47598 * 60.00070 * 10 9 7 43 43 H 1.08995 * 109.47241 * 299.99866 * 10 9 7 44 44 H 1.09001 * 110.66420 * 322.59665 * 13 11 10 45 45 H 1.08999 * 110.66516 * 85.55342 * 13 11 10 46 46 H 1.09000 * 109.47283 * 179.25523 * 15 14 13 47 47 H 1.09002 * 109.47238 * 299.25081 * 15 14 13 48 48 H 0.96995 * 120.00110 * 0.02562 * 18 16 15 49 49 H 0.97002 * 120.00179 * 180.02562 * 22 21 19 50 50 H 1.08996 * 109.91656 * 215.31789 * 27 14 13 51 51 H 1.08996 * 109.92298 * 94.01865 * 27 14 13 52 52 H 1.09002 * 109.46987 * 58.55310 * 30 28 27 53 53 H 1.09001 * 109.47559 * 178.54392 * 30 28 27 54 54 H 1.09000 * 109.47511 * 298.55077 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0804 0.8328 1.3065 7 6 4.0722 2.8580 -0.1245 8 8 3.2840 3.7763 -0.2040 9 7 5.3973 3.1034 -0.1460 10 6 5.8855 4.4794 -0.2659 11 6 7.4156 4.4795 -0.2654 12 1 7.8002 3.7821 -1.0097 13 6 7.9673 4.1391 1.1417 14 7 9.3211 4.7501 1.1330 15 6 9.8140 4.9571 2.5013 16 6 9.8692 3.6343 3.2209 17 8 9.6390 2.6065 2.6192 18 7 10.1745 3.5931 4.5330 19 6 10.2252 2.3895 5.1875 20 1 10.0209 1.4743 4.6516 21 6 10.5393 2.3470 6.5403 22 7 10.7884 3.4605 7.1923 23 14 10.6091 0.7071 7.4320 24 1 10.2917 -0.3878 6.4803 25 1 11.9716 0.5025 7.9861 26 1 9.6190 0.7029 8.5387 27 6 9.1773 6.0385 0.4209 28 6 7.9626 5.9036 -0.5160 29 1 7.2073 6.6485 -0.2657 30 6 8.3976 6.0563 -1.9749 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5137 0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6766 1.9564 -0.8901 38 1 3.7172 -0.1910 1.3960 39 1 5.1705 0.8332 1.3062 40 1 3.7175 1.4222 2.1484 41 1 6.0277 2.3689 -0.0821 42 1 5.5223 5.0685 0.5761 43 1 5.5221 4.9140 -1.1970 44 1 7.3472 4.5887 1.9172 45 1 8.0306 3.0597 1.2793 46 1 10.8123 5.3934 2.4657 47 1 9.1416 5.6314 3.0317 48 1 10.3583 4.4149 5.0142 49 1 11.0080 3.4309 8.1367 50 1 10.0752 6.2425 -0.1624 51 1 9.0063 6.8418 1.1374 52 1 9.1431 5.2976 -2.2130 53 1 7.5328 5.9329 -2.6267 54 1 8.8268 7.0470 -2.1243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101829083.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:57 Heat of formation + Delta-G solvation = -121.562902 kcal Electronic energy + Delta-G solvation = -30211.848977 eV Core-core repulsion = 26181.334018 eV Total energy + Delta-G solvation = -4030.514960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.25183 -40.64755 -39.43327 -37.00926 -36.18564 -35.83432 -34.22403 -33.25216 -32.94700 -31.09283 -29.17950 -27.55448 -27.11082 -26.72319 -25.13597 -24.04101 -22.24529 -21.87247 -21.25684 -21.00318 -20.39088 -19.87430 -18.06931 -17.89815 -17.22595 -16.78035 -16.64832 -16.36181 -16.26687 -15.98845 -15.75883 -15.55785 -15.05108 -14.88804 -14.74352 -14.57033 -14.38059 -14.05433 -13.99417 -13.66181 -13.53581 -13.42353 -13.31191 -13.18707 -12.96857 -12.77632 -12.75528 -12.44561 -12.39398 -12.24085 -12.16452 -12.10852 -11.85767 -11.83025 -11.71893 -11.65296 -11.58427 -11.42003 -11.41176 -10.73094 -10.24811 -10.11534 -10.00704 -9.32244 -8.46975 -5.95419 1.36116 1.41530 1.55547 1.60860 2.04046 2.19382 2.28102 2.83421 3.20070 3.28806 3.56435 3.63176 3.74363 3.80140 3.83881 3.94483 4.19816 4.25738 4.29193 4.30085 4.32868 4.36367 4.38521 4.43305 4.53097 4.59158 4.64005 4.65097 4.71177 4.74050 4.78459 4.88142 4.92321 4.96908 5.00706 5.07527 5.10787 5.12372 5.19192 5.21821 5.27618 5.29281 5.40607 5.41661 5.43069 5.48304 5.51124 5.86155 5.97312 6.10893 6.49899 6.59833 7.12516 7.20090 7.55592 8.10536 8.70857 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007469 B = 0.002992 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3748.085425 B = 9356.374893 C =12659.549122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.096 4.096 4 C -0.105 4.105 5 H 0.121 0.879 6 C -0.145 4.145 7 C 0.512 3.488 8 O -0.586 6.586 9 N -0.722 5.722 10 C 0.136 3.864 11 C -0.087 4.087 12 H 0.096 0.904 13 C 0.049 3.951 14 N -0.509 5.509 15 C 0.047 3.953 16 C 0.441 3.559 17 O -0.610 6.610 18 N -0.575 5.575 19 C -0.328 4.328 20 H 0.081 0.919 21 C -0.015 4.015 22 N -0.923 5.923 23 Si 0.992 3.008 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.272 1.272 27 C 0.036 3.964 28 C -0.088 4.088 29 H 0.086 0.914 30 C -0.135 4.135 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.045 0.955 41 H 0.411 0.589 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.024 0.976 45 H 0.073 0.927 46 H 0.109 0.891 47 H 0.062 0.938 48 H 0.394 0.606 49 H 0.277 0.723 50 H 0.092 0.908 51 H 0.052 0.948 52 H 0.055 0.945 53 H 0.063 0.937 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.941 0.911 -16.530 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.134 4.134 4 C -0.126 4.126 5 H 0.139 0.861 6 C -0.203 4.203 7 C 0.300 3.700 8 O -0.466 6.466 9 N -0.373 5.373 10 C 0.012 3.988 11 C -0.106 4.106 12 H 0.114 0.886 13 C -0.079 4.079 14 N -0.234 5.234 15 C -0.084 4.084 16 C 0.229 3.771 17 O -0.496 6.496 18 N -0.213 5.213 19 C -0.457 4.457 20 H 0.099 0.901 21 C -0.215 4.215 22 N -0.564 5.564 23 Si 0.816 3.184 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.198 1.198 27 C -0.092 4.092 28 C -0.108 4.108 29 H 0.105 0.895 30 C -0.192 4.192 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.247 0.753 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.042 0.958 45 H 0.091 0.909 46 H 0.127 0.873 47 H 0.080 0.920 48 H 0.228 0.772 49 H 0.086 0.914 50 H 0.110 0.890 51 H 0.070 0.930 52 H 0.074 0.926 53 H 0.082 0.918 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.187 0.600 -17.038 20.956 hybrid contribution 0.092 0.165 1.737 1.747 sum -12.095 0.765 -15.300 19.518 Atomic orbital electron populations 1.21774 0.95597 1.02091 1.01643 1.21588 0.96180 0.95214 1.02992 1.21381 0.92250 0.97771 1.02009 1.21380 0.97766 0.91675 1.01738 0.86109 1.21843 1.01420 1.02175 0.94841 1.21254 0.81967 0.92290 0.74511 1.90657 1.56321 1.47962 1.51662 1.46081 1.07220 1.09934 1.74058 1.21292 0.92741 0.83140 1.01622 1.22343 0.92864 0.98722 0.96664 0.88622 1.23213 0.88051 1.00764 0.95890 1.64502 1.24081 1.21511 1.13277 1.21974 1.02868 0.93777 0.89829 1.20663 0.82434 0.91678 0.82353 1.90451 1.55257 1.36913 1.66959 1.41962 1.61829 1.09257 1.08237 1.19688 1.46240 0.86996 0.92816 0.90094 1.26051 0.96292 1.02235 0.96888 1.69685 1.47603 1.28206 1.10911 0.84877 0.78248 0.77409 0.77874 1.19491 1.19713 1.19772 1.23142 0.99488 0.89850 0.96693 1.21955 0.96485 0.95396 0.96942 0.89543 1.21784 1.01576 1.02508 0.93352 0.92853 0.91697 0.93272 0.90792 0.91084 0.93146 0.92327 0.89200 0.92038 0.93612 0.75295 0.93099 0.90555 0.95778 0.90869 0.87293 0.92029 0.77198 0.91384 0.88990 0.93002 0.92568 0.91804 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 71.98 0.71 -1.36 16 2 C -0.12 -1.71 5.69 30.59 0.17 -1.53 16 3 C -0.10 -1.81 4.03 30.60 0.12 -1.69 16 4 C -0.10 -1.93 2.73 -11.54 -0.03 -1.96 16 5 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 6 C -0.15 -2.66 8.84 71.98 0.64 -2.02 16 7 C 0.51 12.79 7.15 87.66 0.63 13.42 16 8 O -0.59 -19.09 15.92 -3.03 -0.05 -19.14 16 9 N -0.72 -16.19 5.37 -463.07 -2.49 -18.67 16 10 C 0.14 3.07 5.00 86.38 0.43 3.50 16 11 C -0.09 -1.93 2.61 -9.59 -0.03 -1.96 16 12 H 0.10 2.08 7.86 -2.38 -0.02 2.06 16 13 C 0.05 1.52 4.95 86.65 0.43 1.95 16 14 N -0.51 -16.07 5.11 -887.60 -4.54 -20.61 16 15 C 0.05 1.64 5.30 85.55 0.45 2.10 16 16 C 0.44 20.76 7.41 87.65 0.65 21.41 16 17 O -0.61 -32.47 13.88 -3.08 -0.04 -32.51 16 18 N -0.58 -29.42 5.29 -306.98 -1.62 -31.04 16 19 C -0.33 -18.42 9.68 84.04 0.81 -17.60 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.02 -0.81 5.50 84.92 0.47 -0.35 16 22 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 23 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 C 0.04 0.81 6.36 86.45 0.55 1.36 16 28 C -0.09 -1.67 3.16 -9.91 -0.03 -1.70 16 29 H 0.09 1.50 7.85 -2.39 -0.02 1.48 16 30 C -0.13 -2.01 8.89 71.98 0.64 -1.37 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.93 6.57 -2.39 -0.02 0.91 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.22 7.96 -2.38 -0.02 1.21 16 38 H 0.09 1.29 6.57 -2.39 -0.02 1.28 16 39 H 0.06 1.16 7.56 -2.38 -0.02 1.15 16 40 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.41 8.18 7.89 -92.71 -0.73 7.45 16 42 H 0.05 1.32 8.00 -2.39 -0.02 1.30 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.02 0.80 7.82 -2.39 -0.02 0.78 16 45 H 0.07 2.76 6.44 -2.39 -0.02 2.74 16 46 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 47 H 0.06 1.97 7.98 -2.39 -0.02 1.96 16 48 H 0.39 19.36 7.90 -92.71 -0.73 18.62 16 49 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 50 H 0.09 1.89 7.68 -2.39 -0.02 1.87 16 51 H 0.05 1.10 7.68 -2.39 -0.02 1.08 16 52 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 53 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 54 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -70.19 425.63 -0.38 -70.58 By element: Atomic # 1 Polarization: 44.75 SS G_CDS: -0.58 Total: 44.17 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 6.62 Total: 12.19 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -8.36 Total: -119.93 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -0.09 Total: -51.65 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -70.19 -0.38 -70.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101829083.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.984 kcal (2) G-P(sol) polarization free energy of solvation -70.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds