Wall clock time and date at job start Tue Mar 31 2020 22:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47353 * 2 1 4 4 C 1.53004 * 109.47143 * 174.49804 * 3 2 1 5 5 H 1.08996 * 109.47257 * 306.05036 * 4 3 2 6 6 C 1.50700 * 109.46943 * 186.05066 * 4 3 2 7 7 O 1.21279 * 119.99801 * 322.41601 * 6 4 3 8 8 N 1.34773 * 120.00065 * 142.42468 * 6 4 3 9 9 C 1.47077 * 120.87926 * 5.49680 * 8 6 4 10 10 C 1.53698 * 108.27570 * 128.76272 * 9 8 6 11 11 N 1.46893 * 109.25933 * 54.07794 * 10 9 8 12 12 C 1.46901 * 111.00081 * 172.61279 * 11 10 9 13 13 C 1.50713 * 109.46833 * 294.30098 * 12 11 10 14 14 O 1.21290 * 119.99828 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99799 * 179.97438 * 13 12 11 16 16 C 1.37093 * 119.99830 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00294 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00162 * 180.02562 * 16 15 13 19 19 N 1.31407 * 119.99693 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00244 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47115 * 59.99286 * 20 18 16 22 22 H 1.48499 * 109.47251 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46986 * 299.99365 * 20 18 16 24 24 C 1.46897 * 111.27079 * 296.75756 * 11 10 9 25 25 C 1.47081 * 120.88030 * 185.77953 * 8 6 4 26 26 C 1.52999 * 109.47087 * 66.04908 * 4 3 2 27 27 C 1.53001 * 109.47221 * 62.48195 * 26 4 3 28 28 C 1.53004 * 109.46881 * 182.48417 * 26 4 3 29 29 H 1.09004 * 109.46921 * 300.00355 * 1 2 3 30 30 H 1.09003 * 109.47006 * 59.99939 * 1 2 3 31 31 H 1.08990 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47354 * 119.99924 * 2 1 3 33 33 H 1.09007 * 109.47073 * 240.00142 * 2 1 3 34 34 H 1.09004 * 109.46791 * 294.49743 * 3 2 1 35 35 H 1.08999 * 109.47457 * 54.49746 * 3 2 1 36 36 H 1.09004 * 109.62989 * 248.52373 * 9 8 6 37 37 H 1.08995 * 109.63092 * 9.10887 * 9 8 6 38 38 H 1.09005 * 109.64198 * 294.07375 * 10 9 8 39 39 H 1.08999 * 109.42454 * 173.95055 * 10 9 8 40 40 H 1.08991 * 109.47603 * 54.29839 * 12 11 10 41 41 H 1.08998 * 109.46932 * 174.30736 * 12 11 10 42 42 H 0.96996 * 119.99789 * 0.02562 * 15 13 12 43 43 H 0.96997 * 120.00040 * 180.02562 * 19 18 16 44 44 H 1.08993 * 109.49750 * 303.14839 * 24 11 10 45 45 H 1.08995 * 109.49444 * 183.06051 * 24 11 10 46 46 H 1.09000 * 109.62753 * 350.89169 * 25 8 6 47 47 H 1.09003 * 109.62548 * 111.47434 * 25 8 6 48 48 H 1.08997 * 109.47176 * 302.48062 * 26 4 3 49 49 H 1.09001 * 109.46896 * 63.84726 * 27 26 4 50 50 H 1.09004 * 109.47123 * 183.84200 * 27 26 4 51 51 H 1.08996 * 109.47445 * 303.84106 * 27 26 4 52 52 H 1.08997 * 109.47397 * 63.26862 * 28 26 4 53 53 H 1.09007 * 109.47008 * 183.27158 * 28 26 4 54 54 H 1.09001 * 109.46866 * 303.26868 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5638 1.4447 0.1383 5 1 3.8497 0.8673 1.0175 6 6 4.0526 2.8624 0.2876 7 8 3.5232 3.7555 -0.3392 8 7 5.0782 3.1377 1.1176 9 6 5.8120 2.0578 1.7948 10 6 7.3143 2.2656 1.5448 11 7 7.6905 3.6246 1.9563 12 6 9.1469 3.8078 1.8988 13 6 9.8057 2.9198 2.9229 14 8 9.1286 2.2044 3.6306 15 7 11.1473 2.9199 3.0516 16 6 11.7466 2.1118 3.9829 17 1 11.1437 1.4754 4.6136 18 6 13.1298 2.1123 4.1160 19 7 13.8634 2.8870 3.3489 20 14 13.9464 1.0106 5.3843 21 1 13.6142 -0.4076 5.0954 22 1 15.4187 1.1955 5.3260 23 1 13.4556 1.3679 6.7396 24 6 7.0003 4.6370 1.1461 25 6 5.4891 4.5263 1.3750 26 6 4.1900 0.8180 -1.1091 27 6 3.8399 1.6635 -2.3352 28 6 5.7102 0.7637 -0.9442 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.7594 1.9271 -0.9352 35 1 1.5986 1.9841 0.8366 36 1 5.6078 2.0914 2.8650 37 1 5.5019 1.0945 1.3900 38 1 7.5311 2.1333 0.4848 39 1 7.8823 1.5392 2.1260 40 1 9.5073 3.5448 0.9044 41 1 9.3907 4.8489 2.1101 42 1 11.6888 3.4918 2.4854 43 1 14.8289 2.8871 3.4415 44 1 7.2214 4.4718 0.0917 45 1 7.3405 5.6305 1.4382 46 1 4.9653 5.1956 0.6925 47 1 5.2544 4.7925 2.4056 48 1 3.8027 -0.1922 -1.2417 49 1 4.2855 2.6530 -2.2334 50 1 4.2280 1.1809 -3.2323 51 1 2.7569 1.7589 -2.4136 52 1 5.9617 0.1143 -0.1056 53 1 6.1608 0.3710 -1.8558 54 1 6.0910 1.7670 -0.7537 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113394968.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:51 Heat of formation + Delta-G solvation = -96.841593 kcal Electronic energy + Delta-G solvation = -31327.342665 eV Core-core repulsion = 27297.899702 eV Total energy + Delta-G solvation = -4029.442963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.81416 -40.38596 -38.87145 -37.62773 -36.05605 -35.43157 -34.65836 -33.24958 -32.23069 -30.73647 -29.85862 -28.14540 -27.41999 -25.92870 -25.13441 -24.49931 -23.07804 -22.31815 -21.08831 -20.75671 -19.86303 -19.27991 -18.31484 -17.78177 -17.06470 -16.83385 -16.56740 -16.35186 -16.28445 -16.06081 -15.62189 -15.44394 -15.27655 -15.09734 -14.82683 -14.67855 -14.49613 -14.13804 -13.88700 -13.72974 -13.50475 -13.22588 -13.12653 -12.98093 -12.88332 -12.79936 -12.78255 -12.44079 -12.41504 -12.38072 -12.27549 -12.15948 -12.10760 -11.97971 -11.84876 -11.66440 -11.46075 -11.41508 -11.16214 -10.52419 -10.32099 -9.98411 -9.72329 -9.20266 -8.44119 -5.92327 1.41186 1.43303 1.53754 1.61155 1.94782 2.07744 2.29676 2.72560 3.22904 3.36884 3.42320 3.67314 3.81811 3.85779 3.96544 4.07890 4.13427 4.17508 4.22919 4.24312 4.31546 4.33058 4.44068 4.46941 4.51566 4.54452 4.59277 4.62226 4.71268 4.72047 4.80372 4.82726 4.88244 4.91810 4.94006 5.00977 5.02283 5.06578 5.09465 5.20564 5.26752 5.36064 5.41626 5.42030 5.43320 5.46552 5.56778 5.82529 6.05253 6.13688 6.42107 6.62768 7.15310 7.16226 7.59229 8.14184 8.72988 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019405 B = 0.002321 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.560028 B =12058.992843 C =12573.177743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.099 4.099 4 C -0.104 4.104 5 H 0.104 0.896 6 C 0.523 3.477 7 O -0.575 6.575 8 N -0.612 5.612 9 C 0.117 3.883 10 C 0.043 3.957 11 N -0.530 5.530 12 C 0.058 3.942 13 C 0.444 3.556 14 O -0.609 6.609 15 N -0.575 5.575 16 C -0.328 4.328 17 H 0.081 0.919 18 C -0.015 4.015 19 N -0.922 5.922 20 Si 0.992 3.008 21 H -0.271 1.271 22 H -0.274 1.274 23 H -0.272 1.272 24 C 0.048 3.952 25 C 0.118 3.882 26 C -0.078 4.078 27 C -0.146 4.146 28 C -0.162 4.162 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.038 0.962 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.395 0.605 43 H 0.276 0.724 44 H 0.035 0.965 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.106 0.894 49 H 0.034 0.966 50 H 0.063 0.937 51 H 0.061 0.939 52 H 0.068 0.932 53 H 0.065 0.935 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.173 -3.250 -10.303 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.126 4.126 5 H 0.122 0.878 6 C 0.313 3.687 7 O -0.455 6.455 8 N -0.345 5.345 9 C -0.005 4.005 10 C -0.086 4.086 11 N -0.255 5.255 12 C -0.073 4.073 13 C 0.231 3.769 14 O -0.495 6.495 15 N -0.212 5.212 16 C -0.458 4.458 17 H 0.099 0.901 18 C -0.215 4.215 19 N -0.563 5.563 20 Si 0.815 3.185 21 H -0.196 1.196 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.081 4.081 25 C -0.005 4.005 26 C -0.096 4.096 27 C -0.203 4.203 28 C -0.219 4.219 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.129 0.871 42 H 0.228 0.772 43 H 0.086 0.914 44 H 0.054 0.946 45 H 0.121 0.879 46 H 0.111 0.889 47 H 0.094 0.906 48 H 0.124 0.876 49 H 0.053 0.947 50 H 0.082 0.918 51 H 0.080 0.920 52 H 0.087 0.913 53 H 0.084 0.916 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.838 -3.149 -9.688 23.195 hybrid contribution 1.452 0.132 -0.320 1.493 sum -19.386 -3.018 -10.008 22.025 Atomic orbital electron populations 1.21768 0.95499 1.02094 1.01669 1.21559 0.96158 0.95084 1.02969 1.21484 0.91617 0.98262 1.02360 1.21589 0.97796 0.91818 1.01352 0.87841 1.21073 0.78445 0.91913 0.77247 1.90632 1.58561 1.49582 1.46707 1.48349 1.32868 1.07836 1.45454 1.22085 0.89685 0.90919 0.97825 1.22654 0.96430 0.91172 0.98307 1.61478 1.05196 1.03766 1.55051 1.21719 0.88222 1.00570 0.96762 1.20653 0.82249 0.86502 0.87494 1.90453 1.63557 1.46207 1.49278 1.41938 1.05602 1.39161 1.34527 1.19611 0.90622 1.20584 1.14987 0.90059 1.26029 0.96414 0.99001 1.00021 1.69668 1.06881 1.39611 1.40135 0.85005 0.77046 0.78319 0.78088 1.19581 1.19819 1.19761 1.22511 0.93829 0.96668 0.95057 1.21670 0.93660 0.83099 1.02067 1.21081 0.95255 1.00518 0.92761 1.21891 1.01859 0.99096 0.97497 1.22199 0.95391 1.01484 1.02818 0.93116 0.92901 0.91783 0.91233 0.90736 0.91496 0.92903 0.91110 0.86884 0.94413 0.89999 0.91876 0.87141 0.77154 0.91425 0.94639 0.87913 0.88937 0.90647 0.87593 0.94694 0.91811 0.92022 0.91269 0.91581 0.94026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.12 -1.45 5.58 30.59 0.17 -1.28 16 3 C -0.10 -1.67 4.13 30.60 0.13 -1.54 16 4 C -0.10 -1.87 1.60 -11.54 -0.02 -1.89 16 5 H 0.10 1.60 6.10 -2.39 -0.01 1.58 16 6 C 0.52 12.79 5.08 87.66 0.45 13.24 16 7 O -0.58 -17.49 14.43 -3.03 -0.04 -17.53 16 8 N -0.61 -14.84 2.68 -817.05 -2.19 -17.03 16 9 C 0.12 2.81 5.25 86.50 0.45 3.27 16 10 C 0.04 1.26 5.09 86.54 0.44 1.70 16 11 N -0.53 -16.26 4.37 -898.89 -3.93 -20.19 16 12 C 0.06 1.94 5.45 85.56 0.47 2.41 16 13 C 0.44 20.16 7.44 87.66 0.65 20.81 16 14 O -0.61 -31.56 13.91 -3.06 -0.04 -31.61 16 15 N -0.57 -28.62 5.29 -306.97 -1.62 -30.25 16 16 C -0.33 -18.13 9.68 84.04 0.81 -17.32 16 17 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 18 C -0.02 -0.79 5.50 84.93 0.47 -0.33 16 19 N -0.92 -49.16 13.05 21.66 0.28 -48.88 16 20 Si 0.99 42.19 29.55 68.60 2.03 44.21 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 C 0.05 1.16 5.62 86.39 0.49 1.64 16 25 C 0.12 2.84 6.61 86.35 0.57 3.41 16 26 C -0.08 -1.23 2.55 -10.79 -0.03 -1.26 16 27 C -0.15 -2.69 8.36 71.98 0.60 -2.09 16 28 C -0.16 -2.83 7.46 71.98 0.54 -2.29 16 29 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.78 6.81 -2.38 -0.02 0.76 16 34 H 0.07 1.28 6.04 -2.39 -0.01 1.26 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.11 2.16 3.47 -2.39 -0.01 2.15 16 38 H 0.04 1.05 6.45 -2.38 -0.02 1.04 16 39 H 0.08 2.99 5.76 -2.39 -0.01 2.98 16 40 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 41 H 0.11 3.24 7.97 -2.39 -0.02 3.22 16 42 H 0.39 18.84 7.90 -92.71 -0.73 18.11 16 43 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.10 2.15 7.99 -2.39 -0.02 2.13 16 46 H 0.09 2.26 7.04 -2.39 -0.02 2.24 16 47 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.11 1.26 6.61 -2.39 -0.02 1.24 16 49 H 0.03 0.83 6.58 -2.39 -0.02 0.82 16 50 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 51 H 0.06 1.11 6.18 -2.39 -0.01 1.10 16 52 H 0.07 1.10 6.84 -2.39 -0.02 1.09 16 53 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 54 H 0.04 0.90 4.73 -2.39 -0.01 0.89 16 Total: -1.00 -66.76 401.39 1.56 -65.21 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: 0.17 Total: 38.64 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 6.90 Total: 17.43 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -7.46 Total: -116.34 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.09 Total: -49.14 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -66.76 1.56 -65.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113394968.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.636 kcal (2) G-P(sol) polarization free energy of solvation -66.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds