Wall clock time and date at job start Tue Mar 31 2020 22:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47338 * 2 1 4 4 C 1.53002 * 109.47363 * 180.02562 * 3 2 1 5 5 H 1.08998 * 115.55725 * 29.30686 * 4 3 2 6 6 C 1.52997 * 117.49755 * 243.62579 * 4 3 2 7 7 C 1.52993 * 117.50087 * 175.00291 * 4 3 2 8 8 H 1.09000 * 117.50092 * 359.97438 * 7 4 3 9 9 C 1.50697 * 117.49716 * 214.97837 * 7 4 3 10 10 O 1.21283 * 120.00264 * 359.97438 * 9 7 4 11 11 N 1.34777 * 120.00301 * 179.97438 * 9 7 4 12 12 C 1.46497 * 120.00603 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47575 * 174.91299 * 12 11 9 14 14 H 1.09000 * 109.46801 * 175.93002 * 13 12 11 15 15 C 1.53004 * 109.46893 * 295.92731 * 13 12 11 16 16 N 1.46895 * 109.46950 * 55.92604 * 13 12 11 17 17 C 1.46904 * 111.00166 * 51.59309 * 16 13 12 18 18 C 1.53001 * 109.46892 * 55.68456 * 17 16 13 19 19 C 1.46897 * 110.99812 * 175.54566 * 16 13 12 20 20 C 1.50705 * 109.47029 * 165.11242 * 19 16 13 21 21 O 1.21292 * 119.99852 * 354.55902 * 20 19 16 22 22 N 1.34777 * 120.00127 * 174.55745 * 20 19 16 23 23 C 1.37091 * 120.00335 * 179.97438 * 22 20 19 24 24 H 1.07996 * 119.99842 * 0.02562 * 23 22 20 25 25 C 1.38947 * 120.00227 * 180.02562 * 23 22 20 26 26 N 1.31417 * 120.00219 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99958 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47145 * 90.00048 * 27 25 23 29 29 H 1.48498 * 109.46765 * 209.99678 * 27 25 23 30 30 H 1.48494 * 109.47385 * 330.00012 * 27 25 23 31 31 H 1.09009 * 109.46816 * 300.00391 * 1 2 3 32 32 H 1.08997 * 109.47267 * 59.99717 * 1 2 3 33 33 H 1.08993 * 109.47492 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46480 * 239.99744 * 2 1 3 35 35 H 1.08998 * 109.46532 * 120.00396 * 2 1 3 36 36 H 1.09009 * 109.47486 * 60.00020 * 3 2 1 37 37 H 1.09000 * 109.47663 * 300.00260 * 3 2 1 38 38 H 1.09010 * 117.50216 * 359.97438 * 6 4 3 39 39 H 1.08997 * 117.50365 * 145.01261 * 6 4 3 40 40 H 0.97003 * 119.99784 * 359.97438 * 11 9 7 41 41 H 1.09007 * 109.46970 * 294.91850 * 12 11 9 42 42 H 1.09007 * 109.46944 * 54.90903 * 12 11 9 43 43 H 1.08996 * 109.46777 * 59.99878 * 15 13 12 44 44 H 1.08997 * 109.46618 * 179.97438 * 15 13 12 45 45 H 1.08995 * 109.46841 * 299.99974 * 15 13 12 46 46 H 1.08996 * 109.47572 * 175.68131 * 17 16 13 47 47 H 1.09003 * 109.47027 * 295.68617 * 17 16 13 48 48 H 1.09009 * 109.47366 * 302.19095 * 18 17 16 49 49 H 1.08996 * 109.47143 * 62.19601 * 18 17 16 50 50 H 1.09000 * 109.47386 * 182.19432 * 18 17 16 51 51 H 1.09005 * 109.47179 * 285.10748 * 19 16 13 52 52 H 1.08997 * 109.47512 * 45.11331 * 19 16 13 53 53 H 0.96999 * 119.99841 * 0.02562 * 22 20 19 54 54 H 0.96997 * 120.00123 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 4.0401 0.5850 -0.4823 6 6 4.2770 2.0451 1.2150 7 6 4.2765 2.7943 -0.1189 8 1 3.6513 3.6838 -0.1968 9 6 5.5690 2.8387 -0.8926 10 8 6.0115 1.8262 -1.3926 11 7 6.2332 4.0034 -1.0289 12 6 7.4900 4.0465 -1.7805 13 6 7.9685 5.4955 -1.8916 14 1 8.9389 5.5206 -2.3874 15 6 6.9581 6.3051 -2.7070 16 7 8.0900 6.0755 -0.5475 17 6 8.8963 5.2134 0.3270 18 6 10.2608 4.9652 -0.3192 19 6 8.6482 7.4329 -0.6084 20 6 8.4234 8.1281 0.7097 21 8 7.7690 7.5879 1.5764 22 7 8.9497 9.3499 0.9256 23 6 8.7448 9.9826 2.1244 24 1 8.1621 9.5017 2.8960 25 6 9.2869 11.2425 2.3467 26 7 9.9964 11.8275 1.4079 27 14 9.0083 12.1042 3.9805 28 1 10.0973 11.7423 4.9231 29 1 9.0037 13.5742 3.7703 30 1 7.7025 11.6810 4.5470 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6768 1.9563 -0.8899 38 1 3.6521 2.4420 2.0152 39 1 5.2121 1.5843 1.5332 40 1 5.8791 4.8133 -0.6293 41 1 8.2437 3.4536 -1.2622 42 1 7.3304 3.6389 -2.7788 43 1 5.9877 6.2798 -2.2113 44 1 7.2988 7.3374 -2.7858 45 1 6.8680 5.8746 -3.7043 46 1 9.0346 5.7019 1.2915 47 1 8.3843 4.2620 0.4716 48 1 10.1210 4.5120 -1.3007 49 1 10.7889 5.9124 -0.4282 50 1 10.8445 4.2941 0.3109 51 1 9.7176 7.3772 -0.8120 52 1 8.1557 7.9931 -1.4031 53 1 9.4728 9.7820 0.2323 54 1 10.3745 12.7072 1.5629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155149245.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:21 Heat of formation + Delta-G solvation = -79.616714 kcal Electronic energy + Delta-G solvation = -30113.143714 eV Core-core repulsion = 26084.447678 eV Total energy + Delta-G solvation = -4028.696036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.26594 -40.50610 -39.11464 -38.02415 -35.95719 -35.37689 -34.71499 -33.23378 -32.78482 -31.15605 -28.57892 -28.12679 -27.51539 -25.97688 -24.71664 -23.67026 -22.78982 -21.52026 -21.27643 -20.91141 -20.24748 -19.63771 -18.32570 -17.88958 -17.35843 -16.95262 -16.52600 -16.46529 -16.14605 -16.02376 -15.65710 -15.41328 -15.27780 -15.05401 -14.85368 -14.45758 -14.16927 -13.97049 -13.70031 -13.65853 -13.55709 -13.43672 -13.11019 -13.09438 -12.99859 -12.90984 -12.72216 -12.55265 -12.39037 -12.35082 -12.18813 -12.11892 -11.93903 -11.71900 -11.66648 -11.61196 -11.38551 -11.17306 -11.00331 -10.74789 -10.24462 -9.99636 -9.95387 -9.15006 -8.43241 -5.90945 1.38811 1.42486 1.52527 1.54657 2.12314 2.20223 2.30379 2.75014 2.89336 3.24062 3.45834 3.64847 3.72814 3.80719 3.89331 3.99563 4.08491 4.19849 4.22912 4.29098 4.29960 4.30621 4.34317 4.39957 4.48770 4.51800 4.59487 4.65180 4.66547 4.75013 4.85282 4.87287 4.88702 4.95384 5.00324 5.01251 5.04720 5.07286 5.08880 5.21573 5.29754 5.37106 5.38040 5.41579 5.44175 5.50141 5.53834 5.91586 6.11333 6.22360 6.61834 6.65510 7.17889 7.27617 7.62814 8.18991 8.74133 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.002216 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.505938 B =12634.050828 C =14003.050233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.113 4.113 5 H 0.098 0.902 6 C -0.143 4.143 7 C -0.197 4.197 8 H 0.139 0.861 9 C 0.537 3.463 10 O -0.590 6.590 11 N -0.703 5.703 12 C 0.129 3.871 13 C 0.069 3.931 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.516 5.516 17 C 0.055 3.945 18 C -0.187 4.187 19 C 0.052 3.948 20 C 0.446 3.554 21 O -0.611 6.611 22 N -0.578 5.578 23 C -0.327 4.327 24 H 0.078 0.922 25 C -0.014 4.014 26 N -0.922 5.922 27 Si 0.989 3.011 28 H -0.273 1.273 29 H -0.272 1.272 30 H -0.273 1.273 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.122 0.878 39 H 0.086 0.914 40 H 0.415 0.585 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.050 0.950 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.051 0.949 50 H 0.065 0.935 51 H 0.067 0.933 52 H 0.113 0.887 53 H 0.394 0.606 54 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.450 -17.096 -8.440 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.123 4.123 4 C -0.132 4.132 5 H 0.116 0.884 6 C -0.181 4.181 7 C -0.218 4.218 8 H 0.157 0.843 9 C 0.325 3.675 10 O -0.471 6.471 11 N -0.354 5.354 12 C 0.005 3.995 13 C -0.039 4.039 14 H 0.092 0.908 15 C -0.202 4.202 16 N -0.241 5.241 17 C -0.073 4.073 18 C -0.245 4.245 19 C -0.079 4.079 20 C 0.233 3.767 21 O -0.497 6.497 22 N -0.216 5.216 23 C -0.457 4.457 24 H 0.096 0.904 25 C -0.214 4.214 26 N -0.563 5.563 27 Si 0.813 3.187 28 H -0.199 1.199 29 H -0.197 1.197 30 H -0.198 1.198 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.140 0.860 39 H 0.105 0.895 40 H 0.252 0.748 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.070 0.930 50 H 0.084 0.916 51 H 0.085 0.915 52 H 0.131 0.869 53 H 0.228 0.772 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.939 -17.921 -8.038 22.482 hybrid contribution 1.275 1.275 0.389 1.845 sum -9.664 -16.646 -7.649 20.712 Atomic orbital electron populations 1.21771 0.95058 1.02019 1.02079 1.21492 0.96327 0.96098 1.02036 1.21239 0.90371 0.97829 1.02830 1.22417 0.95705 0.94221 1.00852 0.88396 1.23148 1.02878 1.01469 0.90581 1.22346 0.97020 0.99904 1.02501 0.84306 1.20071 0.85313 0.82721 0.79368 1.90643 1.70186 1.35320 1.50976 1.45868 1.23940 1.11146 1.54474 1.21432 0.85746 0.95643 0.96667 1.21994 0.99783 0.93094 0.89031 0.90750 1.21893 0.98809 0.99988 0.99527 1.61772 1.51149 1.00564 1.10592 1.22049 0.92032 0.96868 0.96311 1.22413 0.98033 1.01922 1.02170 1.21814 0.99842 0.90939 0.95285 1.20771 0.83027 0.82327 0.90577 1.90486 1.44442 1.66772 1.47970 1.41940 1.47934 1.16018 1.15713 1.19613 1.32234 1.00142 0.93692 0.90375 1.25976 0.96067 0.97014 1.02318 1.69671 1.35061 1.16788 1.34784 0.84979 0.78614 0.77412 0.77654 1.19911 1.19726 1.19765 0.92356 0.92602 0.92324 0.92416 0.91854 0.90566 0.91198 0.85977 0.89533 0.74832 0.92207 0.90351 0.92377 0.91950 0.90231 0.93124 0.90754 0.90763 0.93028 0.91605 0.91488 0.86940 0.77221 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.94 16 2 C -0.12 -1.59 5.89 30.59 0.18 -1.41 16 3 C -0.09 -1.20 5.49 30.59 0.17 -1.03 16 4 C -0.11 -2.11 5.25 -10.80 -0.06 -2.17 16 5 H 0.10 2.21 7.60 -2.39 -0.02 2.19 16 6 C -0.14 -2.67 9.88 30.59 0.30 -2.37 16 7 C -0.20 -4.01 5.91 -11.54 -0.07 -4.08 16 8 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 9 C 0.54 13.93 7.61 87.66 0.67 14.59 16 10 O -0.59 -19.20 16.25 -3.04 -0.05 -19.25 16 11 N -0.70 -16.51 4.89 -463.05 -2.26 -18.77 16 12 C 0.13 2.83 4.41 86.38 0.38 3.22 16 13 C 0.07 1.44 1.68 44.92 0.08 1.52 16 14 H 0.07 1.37 6.69 -2.39 -0.02 1.36 16 15 C -0.14 -2.71 8.99 71.98 0.65 -2.06 16 16 N -0.52 -14.61 3.61 -875.51 -3.16 -17.77 16 17 C 0.06 1.64 5.19 86.30 0.45 2.09 16 18 C -0.19 -4.48 9.00 71.98 0.65 -3.83 16 19 C 0.05 1.66 5.22 85.56 0.45 2.11 16 20 C 0.45 20.21 7.32 87.66 0.64 20.85 16 21 O -0.61 -32.23 14.65 -3.07 -0.04 -32.27 16 22 N -0.58 -28.82 5.29 -306.99 -1.62 -30.44 16 23 C -0.33 -18.22 9.68 84.04 0.81 -17.41 16 24 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 25 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 26 N -0.92 -49.22 13.05 21.66 0.28 -48.93 16 27 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 30 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.94 7.88 -2.38 -0.02 0.92 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.12 1.83 8.03 -2.38 -0.02 1.81 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.41 9.83 7.39 -92.71 -0.68 9.15 16 41 H 0.06 1.42 5.93 -2.38 -0.01 1.41 16 42 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.06 1.18 7.23 -2.39 -0.02 1.16 16 44 H 0.06 1.19 6.24 -2.39 -0.01 1.17 16 45 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.05 1.93 6.44 -2.39 -0.02 1.92 16 47 H 0.07 2.15 6.41 -2.39 -0.02 2.14 16 48 H 0.07 1.48 5.75 -2.38 -0.01 1.47 16 49 H 0.05 1.31 6.52 -2.39 -0.02 1.29 16 50 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.07 1.96 6.21 -2.38 -0.01 1.95 16 52 H 0.11 3.15 5.87 -2.39 -0.01 3.13 16 53 H 0.39 18.78 7.90 -92.71 -0.73 18.05 16 54 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -68.03 422.67 1.14 -66.90 By element: Atomic # 1 Polarization: 47.62 SS G_CDS: -0.51 Total: 47.11 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.48 Total: 8.78 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -6.76 Total: -115.92 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -0.09 Total: -51.53 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -68.03 1.14 -66.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155149245.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.719 kcal (2) G-P(sol) polarization free energy of solvation -68.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds