Wall clock time and date at job start Tue Mar 31 2020 22:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47508 * 2 1 4 4 C 1.52998 * 109.47302 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46643 * 304.99451 * 4 3 2 6 6 C 1.53002 * 109.47368 * 64.99749 * 4 3 2 7 7 C 1.50697 * 109.47006 * 184.99845 * 4 3 2 8 8 O 1.21280 * 120.00458 * 0.02562 * 7 4 3 9 9 N 1.34776 * 119.99922 * 179.97438 * 7 4 3 10 10 C 1.46504 * 120.00164 * 179.97438 * 9 7 4 11 11 C 1.52996 * 109.47479 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47574 * 174.93555 * 11 10 9 13 13 C 1.52996 * 115.54901 * 65.30435 * 12 11 10 14 14 N 1.46897 * 109.47221 * 64.97819 * 13 12 11 15 15 C 1.46904 * 111.00075 * 175.14300 * 14 13 12 16 16 C 1.50694 * 109.46979 * 180.02562 * 15 14 13 17 17 O 1.21293 * 120.00604 * 0.02562 * 16 15 14 18 18 N 1.34787 * 119.99965 * 180.02562 * 16 15 14 19 19 C 1.37091 * 119.99932 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99955 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99832 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00248 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00015 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46794 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46916 * 119.99779 * 23 21 19 26 26 H 1.48500 * 109.46812 * 239.99458 * 23 21 19 27 27 C 1.52997 * 117.49633 * 279.63911 * 12 11 10 28 28 C 1.52992 * 117.50066 * 210.98028 * 12 11 10 29 29 H 1.08998 * 109.46881 * 300.00063 * 1 2 3 30 30 H 1.09006 * 109.46961 * 59.99986 * 1 2 3 31 31 H 1.09000 * 109.47474 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47141 * 120.00505 * 2 1 3 33 33 H 1.09009 * 109.47168 * 239.99484 * 2 1 3 34 34 H 1.09003 * 109.46597 * 300.00277 * 3 2 1 35 35 H 1.08998 * 109.47101 * 60.00071 * 3 2 1 36 36 H 1.09000 * 109.46922 * 180.02562 * 6 4 3 37 37 H 1.09004 * 109.46962 * 299.99945 * 6 4 3 38 38 H 1.08998 * 109.46983 * 60.00318 * 6 4 3 39 39 H 0.96999 * 119.99970 * 0.02562 * 9 7 4 40 40 H 1.08996 * 109.47072 * 300.00931 * 10 9 7 41 41 H 1.09004 * 109.46578 * 60.00368 * 10 9 7 42 42 H 1.09002 * 109.46697 * 294.93435 * 11 10 9 43 43 H 1.09000 * 109.47274 * 54.93141 * 11 10 9 44 44 H 1.08997 * 109.47149 * 184.98113 * 13 12 11 45 45 H 1.09002 * 109.47365 * 304.97784 * 13 12 11 46 46 H 1.00900 * 110.99700 * 51.19638 * 14 13 12 47 47 H 1.08997 * 109.47122 * 300.00442 * 15 14 13 48 48 H 1.09005 * 109.46860 * 60.00631 * 15 14 13 49 49 H 0.97000 * 119.99705 * 0.02562 * 18 16 15 50 50 H 0.96999 * 120.00509 * 180.02562 * 22 21 19 51 51 H 1.08998 * 117.50176 * 359.97438 * 27 12 11 52 52 H 1.09000 * 117.50017 * 145.01635 * 27 12 11 53 53 H 1.09000 * 117.49838 * 214.97707 * 28 12 11 54 54 H 1.08998 * 117.50035 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9336 0.8529 0.8410 6 6 4.0795 0.8329 -1.3083 7 6 4.0724 2.8578 0.1231 8 8 3.2844 3.7761 0.2044 9 7 5.3975 3.1030 0.1446 10 6 5.8860 4.4790 0.2644 11 6 7.4160 4.4790 0.2639 12 6 7.9261 5.9215 0.2616 13 6 7.6028 6.7376 1.5147 14 7 8.2988 6.1567 2.6705 15 6 8.1046 6.9811 3.8708 16 6 8.8319 6.3554 5.0329 17 8 9.4515 5.3245 4.8766 18 7 8.7939 6.9414 6.2461 19 6 9.4560 6.3725 7.3032 20 1 10.0083 5.4550 7.1637 21 6 9.4164 6.9764 8.5540 22 7 8.7447 8.0931 8.7236 23 14 10.3191 6.2015 9.9942 24 1 10.9945 4.9581 9.5439 25 1 11.3319 7.1550 10.5144 26 1 9.3481 5.8755 11.0694 27 6 7.9469 6.6612 -1.0774 28 6 9.2583 6.1986 -0.4378 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5140 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 5.1695 0.8325 -1.3085 37 1 3.7161 -0.1909 -1.3978 38 1 3.7159 1.4225 -2.1498 39 1 6.0278 2.3685 0.0800 40 1 5.5227 5.0681 -0.5776 41 1 5.5226 4.9137 1.1956 42 1 7.7795 3.9665 1.1545 43 1 7.7790 3.9638 -0.6255 44 1 7.9313 7.7672 1.3725 45 1 6.5274 6.7207 1.6919 46 1 9.2803 6.0288 2.4747 47 1 8.4986 7.9815 3.6921 48 1 7.0407 7.0450 4.0995 49 1 8.2981 7.7657 6.3712 50 1 8.7174 8.5148 9.5966 51 1 7.5976 6.1202 -1.9569 52 1 7.7307 7.7295 -1.0657 53 1 9.9043 6.9626 -0.0054 54 1 9.7716 5.3532 -0.8959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163840973.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:20 Heat of formation + Delta-G solvation = -104.425264 kcal Electronic energy + Delta-G solvation = -29038.123667 eV Core-core repulsion = 25008.351852 eV Total energy + Delta-G solvation = -4029.771816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.02467 -40.26186 -39.51803 -36.98917 -36.28213 -35.91550 -35.40177 -33.26707 -33.05511 -30.94250 -29.35054 -27.50144 -26.87158 -25.55996 -24.74628 -23.88171 -22.99036 -21.98026 -21.17447 -20.90004 -20.00264 -19.66580 -18.03809 -17.68368 -17.26648 -16.98232 -16.75409 -16.50312 -16.25377 -15.99846 -15.87660 -15.43450 -15.20862 -15.05673 -14.88461 -14.69815 -14.47847 -14.14492 -13.93027 -13.51393 -13.45760 -13.28744 -13.14685 -13.13373 -12.98489 -12.81708 -12.73430 -12.49998 -12.41372 -12.31900 -12.13519 -12.11976 -12.00420 -11.84955 -11.72137 -11.52418 -11.40913 -11.07557 -10.78482 -10.58923 -10.34961 -10.06138 -10.02804 -9.30971 -8.47825 -5.96779 1.35870 1.40929 1.55498 1.65994 2.03602 2.21736 2.28002 2.70577 3.09079 3.19333 3.52519 3.68824 3.77192 3.81164 3.88646 3.97007 4.03207 4.07314 4.27008 4.30443 4.35310 4.39077 4.40583 4.42771 4.45947 4.54328 4.60623 4.65885 4.72247 4.80384 4.82062 4.86407 4.91383 4.96263 5.02733 5.06199 5.09906 5.13565 5.24027 5.26276 5.29291 5.30632 5.34415 5.39930 5.43872 5.48065 5.52805 5.87817 6.09365 6.42951 6.57686 6.58571 7.11182 7.27786 7.54715 8.09573 8.69876 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009275 B = 0.002040 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.194300 B =13722.755858 C =15932.457501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.107 4.107 5 H 0.113 0.887 6 C -0.140 4.140 7 C 0.508 3.492 8 O -0.590 6.590 9 N -0.719 5.719 10 C 0.130 3.870 11 C -0.074 4.074 12 C -0.129 4.129 13 C 0.096 3.904 14 N -0.672 5.672 15 C 0.064 3.936 16 C 0.439 3.561 17 O -0.620 6.620 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.995 3.005 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.272 1.272 27 C -0.157 4.157 28 C -0.169 4.169 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.414 0.586 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.345 0.655 47 H 0.064 0.936 48 H 0.097 0.903 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.108 0.892 52 H 0.098 0.902 53 H 0.089 0.911 54 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.696 -10.975 -24.030 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.129 4.129 5 H 0.131 0.869 6 C -0.197 4.197 7 C 0.296 3.704 8 O -0.471 6.471 9 N -0.370 5.370 10 C 0.006 3.994 11 C -0.112 4.112 12 C -0.130 4.130 13 C -0.033 4.033 14 N -0.305 5.305 15 C -0.069 4.069 16 C 0.227 3.773 17 O -0.506 6.506 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.818 3.182 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.194 4.194 28 C -0.206 4.206 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.089 0.911 46 H 0.164 0.836 47 H 0.082 0.918 48 H 0.116 0.884 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.126 0.874 52 H 0.116 0.884 53 H 0.108 0.892 54 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.372 -11.304 -23.749 27.922 hybrid contribution 0.869 1.077 1.059 1.743 sum -8.503 -10.227 -22.690 26.300 Atomic orbital electron populations 1.21786 0.95853 1.02082 1.01536 1.21582 0.95990 0.95142 1.03079 1.21392 0.92784 0.97753 1.01780 1.21396 0.97455 0.91455 1.02545 0.86945 1.21829 1.01973 1.01976 0.93938 1.21356 0.82157 0.92334 0.74596 1.90677 1.56580 1.48252 1.51587 1.45992 1.07087 1.09911 1.74050 1.21177 0.94651 0.82886 1.00721 1.21071 0.92497 0.94439 1.03178 1.21238 1.02841 0.95981 0.92915 1.21521 0.98924 0.94939 0.87879 1.60029 1.18445 1.49752 1.02260 1.21527 1.00962 0.95009 0.89384 1.20822 0.85170 0.86451 0.84865 1.90481 1.48512 1.26855 1.84799 1.41955 1.46619 1.24781 1.07818 1.19716 1.29207 1.08676 0.88625 0.90202 1.26083 0.98076 0.96415 1.00924 1.69684 1.42091 1.18663 1.25817 0.84848 0.77986 0.78149 0.77207 1.19664 1.19521 1.19678 1.23112 1.00533 1.00815 0.94967 1.23086 0.90417 1.03726 1.03358 0.93564 0.92872 0.91625 0.91394 0.90153 0.92572 0.93559 0.90748 0.89361 0.92857 0.74937 0.91997 0.93921 0.91280 0.89475 0.94350 0.91103 0.83626 0.91772 0.88448 0.77068 0.91314 0.87364 0.88376 0.89229 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.12 -1.41 5.69 30.59 0.17 -1.24 16 3 C -0.10 -1.68 4.03 30.59 0.12 -1.56 16 4 C -0.11 -1.61 2.72 -11.54 -0.03 -1.64 16 5 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 6 C -0.14 -1.30 8.84 71.98 0.64 -0.66 16 7 C 0.51 11.53 7.15 87.66 0.63 12.16 16 8 O -0.59 -19.10 15.92 -3.03 -0.05 -19.15 16 9 N -0.72 -13.41 5.45 -463.06 -2.52 -15.93 16 10 C 0.13 2.77 5.41 86.38 0.47 3.24 16 11 C -0.07 -1.37 5.14 30.59 0.16 -1.21 16 12 C -0.13 -2.46 1.62 -52.19 -0.08 -2.55 16 13 C 0.10 2.30 5.38 86.30 0.46 2.76 16 14 N -0.67 -21.20 5.99 -517.94 -3.10 -24.30 16 15 C 0.06 2.25 6.16 85.55 0.53 2.78 16 16 C 0.44 21.25 7.82 87.65 0.69 21.93 16 17 O -0.62 -34.52 15.78 -3.07 -0.05 -34.57 16 18 N -0.57 -30.04 5.29 -306.98 -1.62 -31.67 16 19 C -0.33 -19.15 9.68 84.04 0.81 -18.33 16 20 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 21 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 22 N -0.92 -50.46 13.05 21.66 0.28 -50.18 16 23 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 C -0.16 -2.34 9.94 30.62 0.30 -2.04 16 28 C -0.17 -2.80 9.94 30.61 0.30 -2.50 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.69 6.56 -2.38 -0.02 0.68 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.01 7.95 -2.39 -0.02 0.99 16 36 H 0.07 0.49 7.57 -2.39 -0.02 0.47 16 37 H 0.09 0.54 6.56 -2.39 -0.02 0.52 16 38 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.41 5.19 7.89 -92.71 -0.73 4.45 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.04 1.17 7.24 -2.38 -0.02 1.16 16 42 H 0.07 1.60 8.04 -2.39 -0.02 1.58 16 43 H 0.09 1.19 8.09 -2.39 -0.02 1.18 16 44 H 0.04 0.85 8.08 -2.39 -0.02 0.83 16 45 H 0.07 1.78 7.11 -2.39 -0.02 1.76 16 46 H 0.34 11.34 8.37 -89.69 -0.75 10.59 16 47 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 49 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 50 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 51 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 53 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 54 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -73.84 438.12 0.00 -73.84 By element: Atomic # 1 Polarization: 48.29 SS G_CDS: -1.32 Total: 46.97 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 6.35 Total: 9.60 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -6.96 Total: -122.07 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: -0.10 Total: -53.71 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -73.84 0.00 -73.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163840973.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.585 kcal (2) G-P(sol) polarization free energy of solvation -73.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds