Wall clock time and date at job start Tue Mar 31 2020 22:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46945 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46973 * 54.99870 * 4 3 2 6 6 C 1.53004 * 109.47289 * 295.00176 * 4 3 2 7 7 C 1.50693 * 109.47317 * 174.99746 * 4 3 2 8 8 O 1.21290 * 119.99804 * 0.02562 * 7 4 3 9 9 N 1.34777 * 120.00556 * 179.97438 * 7 4 3 10 10 C 1.46492 * 120.00340 * 180.02562 * 9 7 4 11 11 C 1.52999 * 109.47101 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47192 * 175.50502 * 11 10 9 13 13 C 1.53004 * 115.54597 * 279.63411 * 12 11 10 14 14 N 1.46899 * 109.47344 * 295.10822 * 13 12 11 15 15 C 1.46900 * 111.00107 * 185.44762 * 14 13 12 16 16 C 1.50693 * 109.47357 * 180.02562 * 15 14 13 17 17 O 1.21289 * 119.99779 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00316 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00264 * 180.02562 * 18 16 15 20 20 H 1.07993 * 119.99663 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99883 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99476 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00118 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.46971 * 90.00210 * 23 21 19 25 25 H 1.48504 * 109.46805 * 209.99927 * 23 21 19 26 26 H 1.48493 * 109.46907 * 329.99870 * 23 21 19 27 27 C 1.52992 * 117.50187 * 133.92932 * 12 11 10 28 28 C 1.52991 * 60.00095 * 252.50872 * 27 12 11 29 29 H 1.08999 * 109.47710 * 299.99952 * 1 2 3 30 30 H 1.08999 * 109.47408 * 60.00351 * 1 2 3 31 31 H 1.09006 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47164 * 120.00131 * 2 1 3 33 33 H 1.09006 * 109.47062 * 240.00021 * 2 1 3 34 34 H 1.09001 * 109.46778 * 299.99484 * 3 2 1 35 35 H 1.08993 * 109.46943 * 60.00249 * 3 2 1 36 36 H 1.08999 * 109.47010 * 59.99445 * 6 4 3 37 37 H 1.08993 * 109.47141 * 180.02562 * 6 4 3 38 38 H 1.09000 * 109.46518 * 300.00344 * 6 4 3 39 39 H 0.97002 * 119.99181 * 0.02562 * 9 7 4 40 40 H 1.09002 * 109.47087 * 299.99836 * 10 9 7 41 41 H 1.08998 * 109.47596 * 60.00453 * 10 9 7 42 42 H 1.09003 * 109.46963 * 295.50156 * 11 10 9 43 43 H 1.09002 * 109.47539 * 55.50222 * 11 10 9 44 44 H 1.09003 * 109.47273 * 55.11347 * 13 12 11 45 45 H 1.09002 * 109.46783 * 175.10934 * 13 12 11 46 46 H 1.00900 * 110.99787 * 61.50117 * 14 13 12 47 47 H 1.09008 * 109.47166 * 300.00624 * 15 14 13 48 48 H 1.09004 * 109.46849 * 60.00043 * 15 14 13 49 49 H 0.97008 * 119.99769 * 359.97438 * 18 16 15 50 50 H 0.97002 * 119.99345 * 179.97438 * 22 21 19 51 51 H 1.09000 * 117.49559 * 359.97438 * 27 12 11 52 52 H 1.08998 * 117.50269 * 145.01941 * 27 12 11 53 53 H 1.09004 * 117.49947 * 252.51218 * 28 27 12 54 54 H 1.09001 * 117.49962 * 107.48526 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0795 0.8331 1.3083 7 6 4.0724 2.8578 -0.1232 8 8 3.2842 3.7763 -0.2036 9 7 5.3974 3.1033 -0.1437 10 6 5.8858 4.4792 -0.2636 11 6 7.4158 4.4792 -0.2630 12 6 7.9259 5.9021 -0.5005 13 6 7.9285 6.3674 -1.9580 14 7 8.8784 5.5550 -2.7298 15 6 9.0040 6.0561 -4.1049 16 6 9.9839 5.1994 -4.8643 17 8 10.5242 4.2631 -4.3142 18 7 10.2600 5.4736 -6.1547 19 6 11.1511 4.6938 -6.8457 20 1 11.6321 3.8602 -6.3559 21 6 11.4353 4.9762 -8.1762 22 7 12.2899 4.2291 -8.8384 23 14 10.6027 6.4178 -9.0236 24 1 11.4277 7.6397 -8.8465 25 1 10.4577 6.1241 -10.4720 26 1 9.2609 6.6355 -8.4258 27 6 9.0487 6.4105 0.4059 28 6 7.6265 6.9485 0.5747 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.6766 1.9563 -0.8901 35 1 1.6767 1.9563 0.8900 36 1 3.7160 -0.1906 1.3979 37 1 5.1694 0.8335 1.3089 38 1 3.7157 1.4226 2.1498 39 1 6.0277 2.3688 -0.0790 40 1 5.5232 4.9136 -1.1952 41 1 5.5219 5.0686 0.5780 42 1 7.7788 4.1190 0.6996 43 1 7.7795 3.8258 -1.0561 44 1 6.9288 6.2540 -2.3775 45 1 8.2253 7.4152 -2.0043 46 1 8.6112 4.5820 -2.7226 47 1 8.0315 6.0177 -4.5959 48 1 9.3605 7.0861 -4.0851 49 1 9.8276 6.2222 -6.5947 50 1 12.4879 4.4260 -9.7673 51 1 9.4238 5.7314 1.1716 52 1 9.7897 7.0766 -0.0361 53 1 7.4318 7.9687 0.2437 54 1 7.0662 6.6234 1.4512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163840974.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:24 Heat of formation + Delta-G solvation = -98.582761 kcal Electronic energy + Delta-G solvation = -29020.446245 eV Core-core repulsion = 24990.927779 eV Total energy + Delta-G solvation = -4029.518466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.05695 -40.37052 -39.53938 -37.00236 -36.31558 -35.93271 -35.46965 -33.74283 -33.06524 -30.93991 -29.50232 -27.51764 -26.83826 -25.57294 -24.61311 -23.95853 -22.92246 -21.98703 -21.32020 -20.94700 -20.36285 -19.62673 -17.98301 -17.73346 -17.24133 -17.19064 -16.76520 -16.64513 -16.29014 -15.99474 -15.80502 -15.32239 -15.22745 -15.02530 -14.90511 -14.73274 -14.45082 -14.39098 -14.02508 -13.90632 -13.46587 -13.33106 -13.22652 -13.15540 -13.05805 -12.81796 -12.74801 -12.54955 -12.41893 -12.25616 -12.14704 -11.99698 -11.91469 -11.86016 -11.73572 -11.52112 -11.42133 -11.09479 -10.80665 -10.59085 -10.42740 -10.25152 -10.10525 -9.28513 -8.41930 -6.02585 1.29629 1.34837 1.43535 1.62691 1.94848 2.18472 2.22148 2.60750 2.98650 3.14407 3.50207 3.65864 3.78029 3.79825 3.83420 3.95529 3.98956 4.11597 4.15702 4.28540 4.31085 4.36942 4.37492 4.40158 4.44208 4.52533 4.57936 4.65254 4.69702 4.76692 4.79745 4.88308 4.89924 4.94545 5.01261 5.07144 5.10994 5.12964 5.17826 5.22563 5.29261 5.31304 5.35893 5.42319 5.45118 5.50946 5.52013 5.90095 6.04551 6.38973 6.53333 6.59201 6.87417 7.23623 7.39172 7.95375 8.75604 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010052 B = 0.002001 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.858835 B =13990.209657 C =15794.305534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.098 4.098 4 C -0.108 4.108 5 H 0.113 0.887 6 C -0.141 4.141 7 C 0.510 3.490 8 O -0.588 6.588 9 N -0.721 5.721 10 C 0.128 3.872 11 C -0.084 4.084 12 C -0.127 4.127 13 C 0.097 3.903 14 N -0.677 5.677 15 C 0.060 3.940 16 C 0.449 3.551 17 O -0.612 6.612 18 N -0.592 5.592 19 C -0.328 4.328 20 H 0.056 0.944 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.964 3.036 24 H -0.257 1.257 25 H -0.275 1.275 26 H -0.233 1.233 27 C -0.160 4.160 28 C -0.158 4.158 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.414 0.586 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.038 0.962 45 H 0.081 0.919 46 H 0.343 0.657 47 H 0.072 0.928 48 H 0.113 0.887 49 H 0.389 0.611 50 H 0.279 0.721 51 H 0.097 0.903 52 H 0.087 0.913 53 H 0.101 0.899 54 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.993 -0.307 21.639 30.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.136 4.136 4 C -0.129 4.129 5 H 0.131 0.869 6 C -0.199 4.199 7 C 0.298 3.702 8 O -0.468 6.468 9 N -0.373 5.373 10 C 0.004 3.996 11 C -0.122 4.122 12 C -0.128 4.128 13 C -0.031 4.031 14 N -0.310 5.310 15 C -0.072 4.072 16 C 0.237 3.763 17 O -0.496 6.496 18 N -0.233 5.233 19 C -0.458 4.458 20 H 0.074 0.926 21 C -0.214 4.214 22 N -0.574 5.574 23 Si 0.784 3.216 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.156 1.156 27 C -0.197 4.197 28 C -0.196 4.196 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.250 0.750 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.056 0.944 45 H 0.099 0.901 46 H 0.162 0.838 47 H 0.090 0.910 48 H 0.131 0.869 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.116 0.884 52 H 0.106 0.894 53 H 0.119 0.881 54 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.511 0.018 21.989 30.070 hybrid contribution -0.379 0.012 -1.465 1.514 sum -20.890 0.029 20.524 29.286 Atomic orbital electron populations 1.21784 0.95810 1.02058 1.01586 1.21587 0.96027 0.95269 1.03017 1.21384 0.92690 0.97657 1.01874 1.21399 0.97514 0.91607 1.02411 0.86908 1.21834 1.01919 1.01994 0.94121 1.21300 0.82124 0.92250 0.74558 1.90679 1.56507 1.48124 1.51513 1.46033 1.07123 1.09962 1.74187 1.21229 0.94143 0.82911 1.01274 1.21199 0.92700 0.95030 1.03250 1.21197 1.05152 0.94839 0.91582 1.21503 0.93126 0.97520 0.90954 1.60030 1.52558 1.07224 1.11202 1.21634 0.97111 0.99109 0.89346 1.20946 0.86095 0.87194 0.82040 1.90536 1.56030 1.33993 1.69042 1.42046 1.40688 1.29649 1.10955 1.19012 1.20340 1.11514 0.94886 0.92550 1.26104 0.97315 1.01508 0.96433 1.69804 1.35169 1.41003 1.11428 0.85373 0.80009 0.77843 0.78357 1.18157 1.20011 1.15628 1.22962 0.91746 1.03477 1.01546 1.23082 0.98632 0.98314 0.99534 0.92878 0.93409 0.91745 0.90351 0.91397 0.93281 0.92584 0.89481 0.90883 0.92855 0.74952 0.93222 0.91763 0.89692 0.91271 0.94411 0.90066 0.83824 0.91047 0.86888 0.77539 0.91150 0.88420 0.89400 0.88094 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.91 71.98 0.71 -0.99 16 2 C -0.12 -1.29 5.69 30.59 0.17 -1.12 16 3 C -0.10 -1.50 4.03 30.59 0.12 -1.37 16 4 C -0.11 -1.44 2.72 -11.54 -0.03 -1.47 16 5 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 6 C -0.14 -1.23 8.85 71.98 0.64 -0.59 16 7 C 0.51 10.26 7.15 87.65 0.63 10.88 16 8 O -0.59 -17.15 15.92 -3.06 -0.05 -17.20 16 9 N -0.72 -11.55 5.45 -463.08 -2.52 -14.07 16 10 C 0.13 2.27 5.51 86.38 0.48 2.75 16 11 C -0.08 -1.37 5.24 30.60 0.16 -1.21 16 12 C -0.13 -2.28 1.72 -52.18 -0.09 -2.37 16 13 C 0.10 2.04 5.55 86.30 0.48 2.52 16 14 N -0.68 -19.41 6.09 -517.92 -3.16 -22.56 16 15 C 0.06 1.84 6.16 85.55 0.53 2.37 16 16 C 0.45 20.23 7.82 87.66 0.69 20.92 16 17 O -0.61 -33.64 15.78 -3.06 -0.05 -33.69 16 18 N -0.59 -27.94 5.09 -307.00 -1.56 -29.51 16 19 C -0.33 -19.26 10.16 84.04 0.85 -18.40 16 20 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 21 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 22 N -0.93 -56.28 13.96 21.66 0.30 -55.98 16 23 Si 0.96 38.91 27.74 68.60 1.90 40.81 16 24 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 25 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.23 -7.94 6.52 99.48 0.65 -7.30 16 27 C -0.16 -2.85 9.90 30.59 0.30 -2.55 16 28 C -0.16 -2.33 9.58 30.59 0.29 -2.04 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 32 H 0.08 0.63 6.56 -2.39 -0.02 0.61 16 33 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.05 0.95 7.96 -2.39 -0.02 0.93 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 0.51 6.56 -2.39 -0.02 0.49 16 37 H 0.07 0.46 7.56 -2.39 -0.02 0.44 16 38 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.41 4.47 7.89 -92.71 -0.73 3.74 16 40 H 0.05 1.07 7.67 -2.39 -0.02 1.05 16 41 H 0.06 1.19 7.83 -2.39 -0.02 1.18 16 42 H 0.08 1.17 7.94 -2.39 -0.02 1.15 16 43 H 0.07 1.29 6.78 -2.39 -0.02 1.27 16 44 H 0.04 0.76 7.67 -2.39 -0.02 0.74 16 45 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 46 H 0.34 10.48 7.11 -89.69 -0.64 9.84 16 47 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 48 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 49 H 0.39 15.25 5.76 -92.70 -0.53 14.72 16 50 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 51 H 0.10 1.61 8.08 -2.39 -0.02 1.59 16 52 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 53 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 54 H 0.10 1.33 8.00 -2.39 -0.02 1.31 16 Total: -1.00 -80.23 432.96 0.20 -80.03 By element: Atomic # 1 Polarization: 46.26 SS G_CDS: -1.06 Total: 45.20 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 6.40 Total: 6.96 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -6.94 Total: -122.12 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.10 Total: -50.89 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 1.90 Total: 40.81 kcal Total: -80.23 0.20 -80.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163840974.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.553 kcal (2) G-P(sol) polarization free energy of solvation -80.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds