Wall clock time and date at job start Tue Mar 31 2020 22:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47163 * 2 1 4 4 C 1.53001 * 109.46989 * 179.69644 * 3 2 1 5 5 H 1.08999 * 109.47371 * 324.68803 * 4 3 2 6 6 C 1.50706 * 109.46836 * 204.69143 * 4 3 2 7 7 O 1.21284 * 119.99791 * 331.99731 * 6 4 3 8 8 N 1.34774 * 119.99682 * 151.99729 * 6 4 3 9 9 C 1.47022 * 125.65297 * 354.79329 * 8 6 4 10 10 C 1.54319 * 107.27170 * 181.07951 * 9 8 6 11 11 C 1.55447 * 102.97180 * 22.18744 * 10 9 8 12 12 H 1.09002 * 111.00908 * 82.52382 * 11 10 9 13 13 N 1.46900 * 111.11813 * 206.46334 * 11 10 9 14 14 C 1.46897 * 111.00153 * 267.10360 * 13 11 10 15 15 C 1.50702 * 109.47229 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99450 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99800 * 179.97438 * 15 14 13 18 18 C 1.37106 * 119.99576 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00100 * 0.02562 * 18 17 15 20 20 C 1.38945 * 119.99824 * 180.02562 * 18 17 15 21 21 N 1.31418 * 120.00089 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00106 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46988 * 60.00186 * 22 20 18 24 24 H 1.48493 * 109.47407 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47097 * 300.00280 * 22 20 18 26 26 C 1.47433 * 125.64409 * 174.81077 * 8 6 4 27 27 C 1.52997 * 109.46978 * 84.69211 * 4 3 2 28 28 C 1.52995 * 109.47458 * 298.15422 * 27 4 3 29 29 C 1.52995 * 109.47213 * 58.15659 * 27 4 3 30 30 H 1.09000 * 109.47038 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46804 * 299.99860 * 1 2 3 32 32 H 1.08995 * 109.46849 * 60.00368 * 1 2 3 33 33 H 1.08996 * 109.47592 * 239.99660 * 2 1 3 34 34 H 1.09008 * 109.46945 * 119.99927 * 2 1 3 35 35 H 1.09005 * 109.47024 * 59.69678 * 3 2 1 36 36 H 1.08993 * 109.47092 * 299.69709 * 3 2 1 37 37 H 1.09003 * 109.87608 * 300.49772 * 9 8 6 38 38 H 1.09003 * 109.88349 * 61.65806 * 9 8 6 39 39 H 1.08997 * 110.72307 * 140.55708 * 10 9 8 40 40 H 1.09001 * 110.72133 * 263.82519 * 10 9 8 41 41 H 1.00901 * 110.99552 * 143.15115 * 13 11 10 42 42 H 1.08997 * 109.47396 * 300.00535 * 14 13 11 43 43 H 1.09007 * 109.47083 * 59.99788 * 14 13 11 44 44 H 0.96995 * 120.00367 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99645 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.36587 * 274.69349 * 26 8 6 47 47 H 1.08991 * 110.36343 * 36.90610 * 26 8 6 48 48 H 1.09000 * 109.46781 * 178.15565 * 27 4 3 49 49 H 1.09001 * 109.46705 * 71.52348 * 28 27 4 50 50 H 1.08995 * 109.47691 * 191.52886 * 28 27 4 51 51 H 1.09005 * 109.47227 * 311.53081 * 28 27 4 52 52 H 1.09006 * 109.47157 * 61.08955 * 29 27 4 53 53 H 1.09001 * 109.47486 * 181.08162 * 29 27 4 54 54 H 1.08997 * 109.47542 * 301.08396 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0076 5 1 3.9304 0.6049 0.6049 6 6 4.0694 2.7345 0.6014 7 8 3.3975 3.7406 0.5161 8 7 5.2625 2.7718 1.2271 9 6 6.1255 1.6123 1.4965 10 6 7.3665 2.1308 2.2530 11 6 6.8672 3.4688 2.8669 12 1 6.3231 3.2940 3.7951 13 7 7.9817 4.4018 3.0800 14 6 8.5218 4.2748 4.4402 15 6 9.6609 5.2447 4.6210 16 8 9.9901 5.9707 3.7067 17 7 10.3132 5.3061 5.7987 18 6 11.3499 6.1882 5.9630 19 1 11.6436 6.8340 5.1487 20 6 12.0227 6.2512 7.1770 21 7 11.6657 5.4649 8.1677 22 14 13.4348 7.4534 7.4011 23 1 12.9433 8.8389 7.1910 24 1 13.9804 7.3255 8.7762 25 1 14.5028 7.1521 6.4143 26 6 5.9182 3.9820 1.7552 27 6 4.0871 1.3065 -1.4258 28 6 3.6184 -0.0263 -2.0129 29 6 3.5439 2.4571 -2.2753 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 1.6722 1.9579 0.8873 36 1 1.6812 1.9547 -0.8926 37 1 5.5918 0.8881 2.1120 38 1 6.4299 1.1506 0.5572 39 1 7.6598 1.4328 3.0371 40 1 8.1924 2.3075 1.5639 41 1 7.6992 5.3518 2.8903 42 1 7.7378 4.4955 5.1646 43 1 8.8829 3.2579 4.5943 44 1 10.0497 4.7259 6.5299 45 1 12.1357 5.5087 9.0151 46 1 6.4877 4.4784 0.9695 47 1 5.1772 4.6630 2.1736 48 1 5.1766 1.3394 -1.4237 49 1 2.5464 0.0185 -2.2054 50 1 4.1474 -0.2185 -2.9463 51 1 3.8271 -0.8286 -1.3051 52 1 3.8939 3.4059 -1.8684 53 1 3.8967 2.3497 -3.3010 54 1 2.4542 2.4358 -2.2618 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186019548.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:37 Heat of formation + Delta-G solvation = -107.186708 kcal Electronic energy + Delta-G solvation = -29870.496421 eV Core-core repulsion = 25840.604860 eV Total energy + Delta-G solvation = -4029.891561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.55908 -40.22169 -39.23873 -37.82090 -36.21699 -35.56144 -34.30266 -33.27379 -31.84786 -30.59784 -29.79146 -28.18114 -27.82690 -26.25127 -25.33294 -24.19435 -22.13747 -21.67950 -21.38776 -21.00347 -19.91576 -19.58135 -18.15422 -17.87891 -17.44171 -17.31521 -16.84614 -16.37680 -16.10697 -16.01308 -15.64626 -15.26751 -15.08305 -14.71211 -14.53869 -14.40315 -14.27637 -14.00970 -13.94038 -13.90929 -13.54939 -13.47652 -13.21022 -13.10183 -12.91628 -12.84798 -12.76756 -12.63371 -12.44501 -12.40450 -12.22327 -12.12696 -12.09673 -11.77117 -11.75892 -11.67897 -11.50401 -11.31662 -10.91594 -10.71328 -10.35616 -10.01884 -9.70074 -9.43038 -8.46743 -5.95533 1.39931 1.42111 1.52779 1.57442 1.86373 2.05073 2.29567 2.90994 3.20536 3.27520 3.51133 3.64788 3.69461 3.74901 3.81522 4.06739 4.14584 4.24045 4.26075 4.29450 4.30616 4.32581 4.34370 4.48275 4.56187 4.58819 4.60725 4.65506 4.73031 4.75829 4.83013 4.84697 4.89228 4.94192 5.03641 5.06408 5.10970 5.12147 5.17485 5.21684 5.26898 5.28142 5.38526 5.40909 5.41635 5.51139 5.64153 5.86913 6.07629 6.27244 6.49366 6.59838 7.11730 7.12398 7.55924 8.11305 8.70246 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029590 B = 0.001700 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.039852 B =16469.642483 C =16676.527546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C -0.103 4.103 4 C -0.091 4.091 5 H 0.114 0.886 6 C 0.527 3.473 7 O -0.584 6.584 8 N -0.617 5.617 9 C 0.102 3.898 10 C -0.118 4.118 11 C 0.077 3.923 12 H 0.071 0.929 13 N -0.667 5.667 14 C 0.068 3.932 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.106 3.894 27 C -0.079 4.079 28 C -0.147 4.147 29 C -0.152 4.152 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.345 0.655 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.074 0.926 52 H 0.028 0.972 53 H 0.066 0.934 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.281 -18.666 -15.430 30.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.172 4.172 3 C -0.141 4.141 4 C -0.112 4.112 5 H 0.132 0.868 6 C 0.318 3.682 7 O -0.464 6.464 8 N -0.351 5.351 9 C -0.020 4.020 10 C -0.156 4.156 11 C -0.034 4.034 12 H 0.089 0.911 13 N -0.300 5.300 14 C -0.065 4.065 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.209 5.209 18 C -0.465 4.465 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.197 1.197 26 C -0.018 4.018 27 C -0.097 4.097 28 C -0.203 4.203 29 C -0.209 4.209 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.164 0.836 42 H 0.085 0.915 43 H 0.129 0.871 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.093 0.907 52 H 0.047 0.953 53 H 0.085 0.915 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.946 -18.106 -16.187 30.802 hybrid contribution 0.036 1.482 1.346 2.003 sum -18.910 -16.624 -14.840 29.226 Atomic orbital electron populations 1.21779 0.95986 1.02023 1.01408 1.21995 0.95962 0.95201 1.04043 1.21558 0.92106 0.98254 1.02178 1.21499 0.97701 0.93856 0.98138 0.86847 1.21097 0.78877 0.91614 0.76658 1.90677 1.56930 1.38439 1.60367 1.48551 1.19378 1.09812 1.57370 1.22313 0.90475 0.87916 1.01338 1.22762 0.97045 0.95390 1.00414 1.22754 0.89657 0.93976 0.96999 0.91071 1.60108 1.33805 1.10860 1.25221 1.21585 0.94807 0.99562 0.90518 1.20866 0.86795 0.87161 0.82733 1.90501 1.70377 1.47782 1.42412 1.41912 1.30322 1.35952 1.12725 1.19632 1.10459 1.17203 0.99240 0.90360 1.26023 1.01192 0.99517 0.94434 1.69663 1.42801 1.39311 1.04195 0.84997 0.77678 0.78050 0.77664 1.19849 1.19449 1.19699 1.22182 0.94839 0.88503 0.96305 1.20995 1.00308 0.96951 0.91488 1.22082 1.02030 0.94898 1.01314 1.21965 1.01674 0.97303 1.00000 0.91663 0.93800 0.92886 0.88595 0.91495 0.93884 0.91289 0.88920 0.89196 0.88241 0.90339 0.83587 0.91546 0.87138 0.76896 0.91277 0.91548 0.91967 0.90757 0.91117 0.91788 0.90714 0.95312 0.91525 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.87 16 2 C -0.14 -1.31 5.42 30.60 0.17 -1.14 16 3 C -0.10 -1.57 3.99 30.60 0.12 -1.44 16 4 C -0.09 -1.32 1.73 -11.54 -0.02 -1.34 16 5 H 0.11 1.12 6.90 -2.39 -0.02 1.10 16 6 C 0.53 12.09 5.98 87.66 0.52 12.61 16 7 O -0.58 -18.55 15.60 -3.04 -0.05 -18.60 16 8 N -0.62 -12.72 3.33 -811.79 -2.70 -15.42 16 9 C 0.10 1.37 6.09 86.73 0.53 1.90 16 10 C -0.12 -2.01 6.66 31.88 0.21 -1.79 16 11 C 0.08 1.71 3.39 46.41 0.16 1.86 16 12 H 0.07 1.48 7.83 -2.39 -0.02 1.47 16 13 N -0.67 -20.14 6.04 -487.88 -2.95 -23.09 16 14 C 0.07 2.20 6.03 85.56 0.52 2.72 16 15 C 0.44 20.45 7.82 87.66 0.69 21.14 16 16 O -0.62 -34.42 15.78 -3.07 -0.05 -34.47 16 17 N -0.57 -28.99 5.29 -306.99 -1.62 -30.62 16 18 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16 19 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 20 C -0.01 -0.62 5.50 84.92 0.47 -0.16 16 21 N -0.92 -49.14 13.05 21.66 0.28 -48.86 16 22 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 C 0.11 2.55 6.32 86.85 0.55 3.10 16 27 C -0.08 -0.97 2.72 -10.80 -0.03 -1.00 16 28 C -0.15 -1.06 7.52 71.98 0.54 -0.52 16 29 C -0.15 -2.49 8.56 71.98 0.62 -1.87 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.10 0.65 4.15 -2.39 -0.01 0.64 16 34 H 0.07 0.58 8.11 -2.38 -0.02 0.56 16 35 H 0.04 0.86 7.71 -2.38 -0.02 0.84 16 36 H 0.07 1.16 5.46 -2.39 -0.01 1.15 16 37 H 0.09 0.85 7.91 -2.39 -0.02 0.83 16 38 H 0.09 0.91 7.96 -2.39 -0.02 0.89 16 39 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.34 11.36 8.14 -89.69 -0.73 10.63 16 42 H 0.07 1.92 8.09 -2.39 -0.02 1.90 16 43 H 0.11 3.13 8.14 -2.38 -0.02 3.11 16 44 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 45 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 46 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.06 1.67 7.99 -2.39 -0.02 1.65 16 48 H 0.07 0.93 7.96 -2.39 -0.02 0.91 16 49 H 0.07 0.49 5.92 -2.39 -0.01 0.48 16 50 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.07 0.35 7.74 -2.38 -0.02 0.33 16 52 H 0.03 0.64 6.83 -2.38 -0.02 0.63 16 53 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 54 H 0.06 1.02 5.90 -2.39 -0.01 1.00 16 Total: -1.00 -72.60 418.55 0.94 -71.66 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -0.56 Total: 39.60 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 6.56 Total: 15.00 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -6.99 Total: -117.98 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -0.10 Total: -53.07 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -72.60 0.94 -71.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186019548.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.531 kcal (2) G-P(sol) polarization free energy of solvation -72.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds